Ss1.1-Pig4-TMW8051H16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAAGGATAGTCAAGGAGAAAATATGTTTCTGCGCTGTGTGAGCGAGCTGGTGGTAGAA AGTCGAGAGTTTGATATGATTCTTGGGAAACTAGAGAATGATGGAAGTAGAAAGCCTGGA GTCATAGATAAGTTTACTAGTGACACAAAGCCTATTATCAACAAAGTTGCTTCTGTGGCA GAAAACAAAGGACTGTTTGAAGAAGCAGCAAAGCTTTATGACCTTGCCAAGAATGCTGAC AAGGTGCTGGAGCTGATGAACAAACTGCTCAGCCCTGTCGTCCCCCAGATCAGTGCGCCA CAGTCCAACAAGGAGAGGCTGAAGAACATGGCGCTCTCCATCGCAGAACGGTATAGGGCT CAGGGAATCAGTGCAAATAAATTTGTGGACTCCACGTTCTATCTTCTGTTGGACTTGATC ACCTTTTTTGACGAGTATCACAGTGGGCATATTGACAGAGCCTTTGATATAATTGATCGC TTGAAGCTAGTGCCTCTGAATCAGGAAAGTGTGGAAGAAAGAGTGGCTGCCTTCAGAAAT TTCAGTGATGAGATCAGGCACAACCTCTCAGAGGTGCTTCTCGCCACCATGAACATCTTG TTCACACAGTTTAAGAGGCTCAAGGGGACGAGTCCATCCTCGGCATCCAGGCCCCAGCGA GTCATCGAGGACCGTGATTCTCAACTCCGCAGTCAAGCCCGGGCCCTGATTACCTTTGCT GGGATGATACCCTACCGGACGTCTGGGGACACCAATGCGAGGCTGGTGCAGATGGAGGTC CTCATGAATTAAGTGCGATGCTCTGAGGGTTCCTGGGGCTGCTGGCTGTCAGTACCTCGG GCGCGGGGCCCCGCCGCAGGGGGAGTCTCTGGTTTTGTTTCTGTTGTGTTTGTTTTGTTT TTTGTATTATGTATTTTTGTCAACACCAATAAATTTCTTTGATTTGTAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAAGGATAGTCAAGGAGAAAATATGTTTCTGCGCTGTGTGAGCGAGCTGGTGGTAGAA AGTCGAGAGTTTGATATGATTCTTGGGAAACTAGAGAATGATGGAAGTAGAAAGCCTGGA GTCATAGATAAGTTTACTAGTGACACAAAGCCTATTATCAACAAAGTTGCTTCTGTGGCA GAAAACAAAGGACTGTTTGAAGAAGCAGCAAAGCTTTATGACCTTGCCAAGAATGCTGAC AAGGTGCTGGAGCTGATGAACAAACTGCTCAGCCCTGTCGTCCCCCAGATCAGTGCGCCA CAGTCCAACAAGGAGAGGCTGAAGAACATGGCGCTCTCCATCGCAGAACGGTATAGGGCT CAGGGAATCAGTGCAAATAAATTTGTGGACTCCACGTTCTATCTTCTGTTGGACTTGATC ACCTTTTTTGACGAGTATCACAGTGGGCATATTGACAGAGCCTTTGATATAATTGATCGC TTGAAGCTAGTGCCTCTGAATCAGGAAAGTGTGGAAGAAAGAGTGGCTGCCTTCAGAAAT TTCAGTGATGAGATCAGGCACAACCTCTCAGAGGTGCTTCTCGCCACCATGAACATCTTG TTCACACAGTTTAAGAGGCTCAAGGGGACGAGTCCATCCTCGGCATCCAGGCCCCAGCGA GTCATCGAGGACCGTGATTCTCAACTCCGCAGTCAAGCCCGGGCCCTGATTACCTTTGCT GGGATGATACCCTACCGGACGTCTGGGGACACCAATGCGAGGCTGGTGCAGATGGAGGTC CTCATGAATTAAGTGCGATGCTCTGAGGGTTCCTGGGGCTGCTGGCTGTCAGTACCTCGG GCGCGGGGCCCCGCCGCAGGGGGAGTCTCTGGTTTTGTTTCTGTTGTGTTTGTTTTGTTT TTTGTATTATGTATTTTTGTCAACACCAATAAATTTCTTTGATTTGTAAAAAAAAAAAAA |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 113-231, gnl|bosTau2|chr29 (9436629-9436511) | |
| 113-231, gnl|canFam2|chr2 (62352817-62352676) | |
| 113-231, gnl|danRer3|chr18 (18746882-18747019) | |
| 113-231, gnl|dasNov1|scaffold_445 (137417-137281) | |
| 113-231, gnl|echTel1|scaffold_286601 (45363-45223) | |
| 113-231, gnl|fr1|chrUn (139220410-139220538) | |
| 113-231, gnl|galGal2|chr11 (1955345-1955200) | |
| 113-231, gnl|hg17|chr16 (55428009-55428150) | |
| 113-231, gnl|Hg17|chr16 (55428012-55428130) | |
| 113-231, gnl|loxAfr1|scaffold_1582 (97576-97716) | |
| 113-231, gnl|mm7|chr8 (92896880-92897019) | |
| 113-231, gnl|Mm7|chr8 (92896883-92897001) | |
| 113-231, gnl|monDom2|scaffold_35 (23531922-23532063) | |
| 113-231, gnl|oryCun1|scaffold_205132 (109502-109643) | |
| 113-231, gnl|panTro1|chr18 (49520514-49520655) | |
| 113-231, gnl|rheMac2|chr20 (55193949-55194090) | |
| 113-231, gnl|rn3|chr19 (11136862-11136724) | |
| 113-231, gnl|tetNig1|chr13 (975578-975706) | |
| 113-231, gnl|xenTro1|scaffold_984 (99172-99041) | |
| 350-472, gnl|bosTau2|chr29 (9434711-9434589) | |
| 350-472, gnl|Hg17|chr16 (55430364-55430486) | |
| 350-472, gnl|Mm7|chr8 (92898631-92898753) | |
| 551-681, gnl|bosTau2|chr29 (9432635-9432505) | |
| 551-681, gnl|canFam2|chr2 (62348940-62348752) | |
| 551-681, gnl|danRer3|chr18 (18750497-18750650) | |
| 551-681, gnl|dasNov1|scaffold_445 (132639-132446) | |
| 551-681, gnl|echTel1|scaffold_185442 (6959-6770) | |
| 551-681, gnl|fr1|chrUn (139221176-139221345) | |
| 551-681, gnl|galGal2|chr11 (1951137-1950931) | |
| 551-681, gnl|hg17|chr16 (55433079-55433269) | |
| 551-681, gnl|Hg17|chr16 (55433116-55433246) | |
| 551-681, gnl|loxAfr1|scaffold_1582 (102445-102637) | |
| 551-681, gnl|mm7|chr8 (92900538-92900728) | |
| 551-681, gnl|Mm7|chr8 (92900575-92900705) | |
| 551-681, gnl|monDom2|scaffold_35 (23540059-23540255) | |
| 551-681, gnl|oryCun1|scaffold_205132 (117630-117819) | |
| 551-681, gnl|panTro1|chr18 (49525709-49525899) | |
| 551-681, gnl|rheMac2|chr20 (55199243-55199433) | |
| 551-681, gnl|rn3|chr19 (11132900-11132711) | |
| 551-681, gnl|tetNig1|chr13 (976482-976633) | |
| 551-681, gnl|xenTro1|scaffold_984 (94650-94465) | |
| 682-948, gnl|bosTau2|chr29 (9430915-9430645) | |
| 682-948, gnl|Hg17|chr16 (55435912-55436178) | |
| 682-948, gnl|Mm7|chr8 (92903629-92903893) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 113-231, gnl|bosTau2|chr29 (9436629-9436511) | |
| 113-231, gnl|canFam2|chr2 (62352817-62352676) | |
| 113-231, gnl|danRer3|chr18 (18746882-18747019) | |
| 113-231, gnl|dasNov1|scaffold_445 (137417-137281) | |
| 113-231, gnl|echTel1|scaffold_286601 (45363-45223) | |
| 113-231, gnl|fr1|chrUn (139220410-139220538) | |
| 113-231, gnl|galGal2|chr11 (1955345-1955200) | |
| 113-231, gnl|hg17|chr16 (55428009-55428150) | |
| 113-231, gnl|Hg17|chr16 (55428012-55428130) | |
| 113-231, gnl|loxAfr1|scaffold_1582 (97576-97716) | |
| 113-231, gnl|mm7|chr8 (92896880-92897019) | |
| 113-231, gnl|Mm7|chr8 (92896883-92897001) | |
| 113-231, gnl|monDom2|scaffold_35 (23531922-23532063) | |
| 113-231, gnl|oryCun1|scaffold_205132 (109502-109643) | |
| 113-231, gnl|panTro1|chr18 (49520514-49520655) | |
| 113-231, gnl|rheMac2|chr20 (55193949-55194090) | |
| 113-231, gnl|rn3|chr19 (11136862-11136724) | |
| 113-231, gnl|tetNig1|chr13 (975578-975706) | |
| 113-231, gnl|xenTro1|scaffold_984 (99172-99041) | |
| 350-472, gnl|bosTau2|chr29 (9434711-9434589) | |
| 350-472, gnl|Hg17|chr16 (55430364-55430486) | |
| 350-472, gnl|Mm7|chr8 (92898631-92898753) | |
| 551-681, gnl|bosTau2|chr29 (9432635-9432505) | |
| 551-681, gnl|canFam2|chr2 (62348940-62348752) | |
| 551-681, gnl|danRer3|chr18 (18750497-18750650) | |
| 551-681, gnl|dasNov1|scaffold_445 (132639-132446) | |
| 551-681, gnl|echTel1|scaffold_185442 (6959-6770) | |
| 551-681, gnl|fr1|chrUn (139221176-139221345) | |
| 551-681, gnl|galGal2|chr11 (1951137-1950931) | |
| 551-681, gnl|hg17|chr16 (55433079-55433269) | |
| 551-681, gnl|Hg17|chr16 (55433116-55433246) | |
| 551-681, gnl|loxAfr1|scaffold_1582 (102445-102637) | |
| 551-681, gnl|mm7|chr8 (92900538-92900728) | |
| 551-681, gnl|Mm7|chr8 (92900575-92900705) | |
| 551-681, gnl|monDom2|scaffold_35 (23540059-23540255) | |
| 551-681, gnl|oryCun1|scaffold_205132 (117630-117819) | |
| 551-681, gnl|panTro1|chr18 (49525709-49525899) | |
| 551-681, gnl|rheMac2|chr20 (55199243-55199433) | |
| 551-681, gnl|rn3|chr19 (11132900-11132711) | |
| 551-681, gnl|tetNig1|chr13 (976482-976633) | |
| 551-681, gnl|xenTro1|scaffold_984 (94650-94465) | |
| 682-948, gnl|bosTau2|chr29 (9430915-9430645) | |
| 682-948, gnl|Hg17|chr16 (55435912-55436178) | |
| 682-948, gnl|Mm7|chr8 (92903629-92903893) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| ece (0.45861) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| eye (0.341006) | |
| spl (0.286369) | |
| med (0.232504) | |
| nms (0.213858) | |
| mcp (0.170648) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| cov (0.132153) | |
| ecc (0.115035) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.45861) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| eye (0.341006) | |
| spl (0.286369) | |
| med (0.232504) | |
| nms (0.213858) | |
| mcp (0.170648) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| cov (0.132153) | |
| ecc (0.115035) |