Non-Coding RNA Search

Ss1.1-Pig4-TMW8051H17.3

Sequence:


               
               CATTGATCCTCTTCAGTTGCAGCCTCCCACATTTAATCTGGAAGACAAAGTGTTTGGAAA
CCAAAAGAGGCTCACCCCAAATAGCACAGAAAGTCCTCAGAGTTGCAGTTCAATTATTTT
TCATTGGAAAGCTGTGAAAAGGGGGCTAACACTATCTAACACAGTGCCTTGCCTAGAGTA
AGTACGAAGGAAATTATCTATTGAAACAATAAATGAATGAATACATGACAAGACATAGGG
AAGAATGAGCTTATAAATCCTAATTAAAAACAGAATTGGACATGAGATGCCTGGAATTTT
GAAAGTGATCAGAGATGGCCAGTTCTAGATGCAGCATCTCTAGGGTCCTCAGGTGCCTCT
CCTCAGAGCTCCCTCCCACCTGTAGGAGATTAGTGAGGCAAAGTACTGCTCAGAGGTGAA
CTCATTGTTTTTGGGATCTAGCTCCATGGTTCTCAAAGTGTGGTACCCAGACCAGCGGAA
TTAGCATCACTTCGGAGCCTGCAAATGGGAGGGACCCAAGTGCCTACCTACTCGCTAACA
GCAGGTGCAAACACAATGAGGAGTTTGGTGGGCTTGGGGCCAGAGGAGTGGATGGGAAGG
GATGGATGCAGAAGGTCAGATTCAGGGCAAGCTACAAATCTGATATTGCAACATTTTCCA
AAAGCCCAGAAGGCAAACCATGCATGCTCTACCCTGAACTCCCCAACCAAGGTTTTCTCC
TTTGCCTTGTTTTTAACTGGGTTCATTGTCCAAAATGCAGAGGTTTGCTTTGCTTTTTTT
TCAGAAGTTCCAAACAGCAACTTTGAGAGCAGTGGGGTGCTTGGCAGCTGTTCTGTGTTT
TCCAGGATTCCAACTGAGCATTGATATTCCCTCATTTGCCAACTTATTTTTATAGGAAGC
CAATTAAAAAAAAAGTTTTCTTATAGTATTGGAACTACTTCTAATTTTAAAATGACTTTT
TTGATGTATTTTTTGTTAAATACTATGTAGTGTAATGTATAATTGCTCTTGTTTATTGCT
TTTACAATCATATTTATTAAACAGATAATGCCCGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTGATCCTCTTCAGTTGCAGCCTCCCACATTTAATCTGGAAGACAAAGTGTTTGGAAA
CCAAAAGAGGCTCACCCCAAATAGCACAGAAAGTCCTCAGAGTTGCAGTTCAATTATTTT
TCATTGGAAAGCTGTGAAAAGGGGGCTAACACTATCTAACACAGTGCCTTGCCTAGAGTA
AGTACGAAGGAAATTATCTATTGAAACAATAAATGAATGAATACATGACAAGACATAGGG
AAGAATGAGCTTATAAATCCTAATTAAAAACAGAATTGGACATGAGATGCCTGGAATTTT
GAAAGTGATCAGAGATGGCCAGTTCTAGATGCAGCATCTCTAGGGTCCTCAGGTGCCTCT
CCTCAGAGCTCCCTCCCACCTGTAGGAGATTAGTGAGGCAAAGTACTGCTCAGAGGTGAA
CTCATTGTTTTTGGGATCTAGCTCCATGGTTCTCAAAGTGTGGTACCCAGACCAGCGGAA
TTAGCATCACTTCGGAGCCTGCAAATGGGAGGGACCCAAGTGCCTACCTACTCGCTAACA
GCAGGTGCAAACACAATGAGGAGTTTGGTGGGCTTGGGGCCAGAGGAGTGGATGGGAAGG
GATGGATGCAGAAGGTCAGATTCAGGGCAAGCTACAAATCTGATATTGCAACATTTTCCA
AAAGCCCAGAAGGCAAACCATGCATGCTCTACCCTGAACTCCCCAACCAAGGTTTTCTCC
TTTGCCTTGTTTTTAACTGGGTTCATTGTCCAAAATGCAGAGGTTTGCTTTGCTTTTTTT
TCAGAAGTTCCAAACAGCAACTTTGAGAGCAGTGGGGTGCTTGGCAGCTGTTCTGTGTTT
TCCAGGATTCCAACTGAGCATTGATATTCCCTCATTTGCCAACTTATTTTTATAGGAAGC
CAATTAAAAAAAAAGTTTTCTTATAGTATTGGAACTACTTCTAATTTTAAAATGACTTTT
TTGATGTATTTTTTGTTAAATACTATGTAGTGTAATGTATAATTGCTCTTGTTTATTGCT
TTTACAATCATATTTATTAAACAGATAATGCCCGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26343943|dbj|BAC35628.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26343943|dbj|BAC35628.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               495-613, - strand, RNAz p=0.883247
               

               
               654-890, - strand, RNAz p=0.892894

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               495-613, - strand, RNAz p=0.883247
               

               
               654-890, - strand, RNAz p=0.892894

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               495-1050, gnl|bosTau2|chr26 (19992936-19993505)
               

               
               495-1050, gnl|Hg17|chr10 (108324218-108323661)
               

               
               495-1050, gnl|Mm7|chr19 (50048229-50047658)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               495-1050, gnl|bosTau2|chr26 (19992936-19993505)
               

               
               495-1050, gnl|Hg17|chr10 (108324218-108323661)
               

               
               495-1050, gnl|Mm7|chr19 (50048229-50047658)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fcc (0.197785)
               

               
               cut (0.169924)
               

               
               bla (0.124347)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               cut (0.169924)
               

               
               bla (0.124347)

	495-613, - strand, RNAz p=0.883247
	654-890, - strand, RNAz p=0.892894

	495-1050, gnl\|bosTau2\|chr26 (19992936-19993505)
	495-1050, gnl\|Hg17\|chr10 (108324218-108323661)
	495-1050, gnl\|Mm7\|chr19 (50048229-50047658)