Non-Coding RNA Search

Ss1.1-Pig4-TMW8051H22.5

Sequence:


               
               TGGGCTGCCTCTGTGTGTGCTGGGAGGCTGGCCTGGCATCCCCCAGCCTCCCCTGTCAGA
CAACACTCCCTCCCTCCTCGCTCTGGCTCCTACACCCTCCTGAAGCCTTGACCTTGGCCA
GCCTGGACGATGCCTCCCAACCTCACCGGCTACTACCGCTTTGTCTCGCAAAAGAACCTG
GAGGACTACCTACAAGCCCTGAACATCAACTTGGCTCTGCGCAAGATCGCGCTGCTGCTC
AAGCCGGACAAGGAGATCGACCATCGGGGCAACCACATGACCGTGAAGACCCTGAGCACC
TTCCGAAACTACGTGCTGGAATTCGAGGTGGGGGTGGAGTTTGAGGAGGACCTAGGCATC
GTGGATGGACGAAAGTGCCAGACCATAGTCACCTGGGAAGAGGAGCAGCTGGTGTGTGTG
CAGAAAGGGGAGGTCCCCAACCGGGGCTGGAGACACTGGCTGGAGGGAGAGACGTTGTAT
CTGGAAATGACTGCAAGGGATGCCGTGTGCGAGCAGGTCTTCAGGAAGGTCAAATAGCCG
GGGCAGAGCTGAGGGCCCTCCCAGCCACGCCAGTCCCCAGACTCCTCCTGCTCGTGTCCC
CTTCAAACCCAGATGGTCCCAGGTCAGCAGTCCCCTTCCCAAGCCACTTACCCTCCCTCT
GCATCCCCCACCCATGTTAATCTATAACTTGCAGCCCCCAAGCCAAAGTCCTTTCTCACA
CTCCACTGCCCAACAGTGACCTCATACCCAGTTCAAAGTCTGGTCTCCTGGATGAGAGCA
TTGGGCAAAGGGGAAAAGGCCTTTGAGAATTATGGATTCCACCTCTTTTAATTCATTTGG
CCTCTTATTTTCCATCTAAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGCTGCCTCTGTGTGTGCTGGGAGGCTGGCCTGGCATCCCCCAGCCTCCCCTGTCAGA
CAACACTCCCTCCCTCCTCGCTCTGGCTCCTACACCCTCCTGAAGCCTTGACCTTGGCCA
GCCTGGACGATGCCTCCCAACCTCACCGGCTACTACCGCTTTGTCTCGCAAAAGAACCTG
GAGGACTACCTACAAGCCCTGAACATCAACTTGGCTCTGCGCAAGATCGCGCTGCTGCTC
AAGCCGGACAAGGAGATCGACCATCGGGGCAACCACATGACCGTGAAGACCCTGAGCACC
TTCCGAAACTACGTGCTGGAATTCGAGGTGGGGGTGGAGTTTGAGGAGGACCTAGGCATC
GTGGATGGACGAAAGTGCCAGACCATAGTCACCTGGGAAGAGGAGCAGCTGGTGTGTGTG
CAGAAAGGGGAGGTCCCCAACCGGGGCTGGAGACACTGGCTGGAGGGAGAGACGTTGTAT
CTGGAAATGACTGCAAGGGATGCCGTGTGCGAGCAGGTCTTCAGGAAGGTCAAATAGCCG
GGGCAGAGCTGAGGGCCCTCCCAGCCACGCCAGTCCCCAGACTCCTCCTGCTCGTGTCCC
CTTCAAACCCAGATGGTCCCAGGTCAGCAGTCCCCTTCCCAAGCCACTTACCCTCCCTCT
GCATCCCCCACCCATGTTAATCTATAACTTGCAGCCCCCAAGCCAAAGTCCTTTCTCACA
CTCCACTGCCCAACAGTGACCTCATACCCAGTTCAAAGTCTGGTCTCCTGGATGAGAGCA
TTGGGCAAAGGGGAAAAGGCCTTTGAGAATTATGGATTCCACCTCTTTTAATTCATTTGG
CCTCTTATTTTCCATCTAAGAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q53FB1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53FB1_HUMAN

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               3-202, gnl|bosTau2|chr5 (60036315-60036518)
               

               
               3-202, gnl|Hg17|chr12 (7172749-7172566)
               


               
               206-381, gnl|bosTau2|chr5 (60036826-60037001)
               

               
               206-381, gnl|Hg17|chr12 (7172278-7172103)
               

               
               206-381, gnl|Mm7|chr6 (124449048-124449223)
               


               
               483-863, gnl|bosTau2|chr5 (60040683-60041082)
               

               
               483-863, gnl|Hg17|chr12 (7168045-7167658)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-202, gnl|bosTau2|chr5 (60036315-60036518)
               

               
               3-202, gnl|Hg17|chr12 (7172749-7172566)
               


               
               206-381, gnl|bosTau2|chr5 (60036826-60037001)
               

               
               206-381, gnl|Hg17|chr12 (7172278-7172103)
               

               
               206-381, gnl|Mm7|chr6 (124449048-124449223)
               


               
               483-863, gnl|bosTau2|chr5 (60040683-60041082)
               

               
               483-863, gnl|Hg17|chr12 (7168045-7167658)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nje (0.66368)
               

               
               cli (0.611247)
               

               
               fli (0.405762)
               

               
               eje (0.395335)
               

               
               elu (0.385356)
               

               
               cag (0.151194)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.66368)
               

               
               cli (0.611247)
               

               
               fli (0.405762)
               

               
               eje (0.395335)
               

               
               elu (0.385356)
               

               
               cag (0.151194)

	3-202, gnl\|bosTau2\|chr5 (60036315-60036518)
	3-202, gnl\|Hg17\|chr12 (7172749-7172566)

	206-381, gnl\|bosTau2\|chr5 (60036826-60037001)
	206-381, gnl\|Hg17\|chr12 (7172278-7172103)
	206-381, gnl\|Mm7\|chr6 (124449048-124449223)

	483-863, gnl\|bosTau2\|chr5 (60040683-60041082)
	483-863, gnl\|Hg17\|chr12 (7168045-7167658)

	nje (0.66368)
	cli (0.611247)
	fli (0.405762)
	eje (0.395335)
	elu (0.385356)
	cag (0.151194)