Non-Coding RNA Search

Ss1.1-Pig4-TMW8051I04.5

Sequence:


               
               CACCTTGAGCTGCCACCTGGAACCTGAAAAATTGCTTTAGCAGCTGGTCCACTGCTGACC
TGAGCCCAGCAGGGTATGTGCATGCACTATAAGATGCTGGCTATGAGTCTGACATCTGCT
TTACCTCAGTGCAAAAGAGAACAGTTTGGACTCTCTAGACAATGCTGGATGCTGTTGATT
AAATGTGGCTGCCAATGGTAAGAATTTAGCTCCTCAGAGTGGCACTGTGGGGGTCTGACT
TGCCTCAATAAAGCAGAAACACTGCTGCCAAGCATAGTGAGGCCCAGGTAAAGATCTGTA
GGTTGGCAATCCTTTGAAGTCCTGCTACCTCCAATGGAGCCCAGTCATCCCTTCCACAGC
AACATCAGTGAGGATTGAAGGTATGCAGACCTCACTGAAGGTCAGCTACCCTCCTGTGAG
AGTCTGAAAAATACTGTTGTCAGAGCTCTGCCCTTTTGGAAAGAAGAACTAGTTCCCCAG
ATTAAGGAGGGGAAATGGGTACTGATTGTAGCCCATGGCAACAGCCTTCTGGGGCATTGT
AAAGCATCTGCTCACTGGCATGCTCGTTGTCTGTGAGTTGGACAAGAACTTGAAGCCCGT
CAAGCCCATGCAGTTCCTAGAGATGAGGAGACCGTGCGTAAAGCCATGGAAGTTGTGGCT
CCACAGGGCAAGGCCAAGAAGTGAGGGCGAGCAGCAGACTACTCCCAAGGATAGCCTCCA
TGCCCATCCCTTCTTCTGCCCTTTTCCCCTTCATGTTACACTGACCACATCTGTAAGTTG
TAGGTGCAAACAGGGACTGTTGGCTCCCAGTTTTGTACTGACCCATTTTGTCTCTTGCAC
CTATTTCTTCATACAGTCTAGTCAGAATGGCACCTCTGATACATGGTCCTTATTCCAGGC
TGTTGCAAAGCTTGTCCAAAAGGGTGAAGAGGCAGTAATTTGAAGAGTTTTGCTAATGCT
TTATTACTAAGGACCTGCTTGAGTAAGGGATAGGGAGGAACCATGCTAGGGTGTGACCAG
TGAGGAGAAGTAGGAGAGCCTATTTGTGTTCCTAGGAGTCAGTCCTGTACTTTTCTGTAG
TCAGGTGACTGCGGGGCTCTTATCATTACAAGGAAAGATGAATATAACCTGTGTGGTGAT
TCAAACAAATATTTCCTCCCTGTCTCCTTAATATTGCAGTCAATCCTGAATGTTTATATG
TTGCATTTACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCTTGAGCTGCCACCTGGAACCTGAAAAATTGCTTTAGCAGCTGGTCCACTGCTGACC
TGAGCCCAGCAGGGTATGTGCATGCACTATAAGATGCTGGCTATGAGTCTGACATCTGCT
TTACCTCAGTGCAAAAGAGAACAGTTTGGACTCTCTAGACAATGCTGGATGCTGTTGATT
AAATGTGGCTGCCAATGGTAAGAATTTAGCTCCTCAGAGTGGCACTGTGGGGGTCTGACT
TGCCTCAATAAAGCAGAAACACTGCTGCCAAGCATAGTGAGGCCCAGGTAAAGATCTGTA
GGTTGGCAATCCTTTGAAGTCCTGCTACCTCCAATGGAGCCCAGTCATCCCTTCCACAGC
AACATCAGTGAGGATTGAAGGTATGCAGACCTCACTGAAGGTCAGCTACCCTCCTGTGAG
AGTCTGAAAAATACTGTTGTCAGAGCTCTGCCCTTTTGGAAAGAAGAACTAGTTCCCCAG
ATTAAGGAGGGGAAATGGGTACTGATTGTAGCCCATGGCAACAGCCTTCTGGGGCATTGT
AAAGCATCTGCTCACTGGCATGCTCGTTGTCTGTGAGTTGGACAAGAACTTGAAGCCCGT
CAAGCCCATGCAGTTCCTAGAGATGAGGAGACCGTGCGTAAAGCCATGGAAGTTGTGGCT
CCACAGGGCAAGGCCAAGAAGTGAGGGCGAGCAGCAGACTACTCCCAAGGATAGCCTCCA
TGCCCATCCCTTCTTCTGCCCTTTTCCCCTTCATGTTACACTGACCACATCTGTAAGTTG
TAGGTGCAAACAGGGACTGTTGGCTCCCAGTTTTGTACTGACCCATTTTGTCTCTTGCAC
CTATTTCTTCATACAGTCTAGTCAGAATGGCACCTCTGATACATGGTCCTTATTCCAGGC
TGTTGCAAAGCTTGTCCAAAAGGGTGAAGAGGCAGTAATTTGAAGAGTTTTGCTAATGCT
TTATTACTAAGGACCTGCTTGAGTAAGGGATAGGGAGGAACCATGCTAGGGTGTGACCAG
TGAGGAGAAGTAGGAGAGCCTATTTGTGTTCCTAGGAGTCAGTCCTGTACTTTTCTGTAG
TCAGGTGACTGCGGGGCTCTTATCATTACAAGGAAAGATGAATATAACCTGTGTGGTGAT
TCAAACAAATATTTCCTCCCTGTCTCCTTAATATTGCAGTCAATCCTGAATGTTTATATG
TTGCATTTACTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               199-550, - strand, RNAz p=0.866954

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-550, - strand, RNAz p=0.866954

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               80-550, gnl|bosTau2|chr12 (31708399-31707934)
               

               
               80-550, gnl|Hg17|chr12 (102927149-102927614)
               

               
               80-550, gnl|Mm7|chr3 (11022224-11021759)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-550, gnl|bosTau2|chr12 (31708399-31707934)
               

               
               80-550, gnl|Hg17|chr12 (102927149-102927614)
               

               
               80-550, gnl|Mm7|chr3 (11022224-11021759)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cmu (0.186393)
               

               
               cki (0.165235)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               cki (0.165235)

	80-550, gnl\|bosTau2\|chr12 (31708399-31707934)
	80-550, gnl\|Hg17\|chr12 (102927149-102927614)
	80-550, gnl\|Mm7\|chr3 (11022224-11021759)