Non-Coding RNA Search

Ss1.1-Pig4-TMW8051I06.3

Sequence:


               
               GACTTTTCCAGCGTGTCCCGAGTCACACAACCCAAGTGTCCAACCTCTCTGTGGTGCCTT
GTTTTCTGCATTAACTCCTCAGCTAGCGCCCTAGGGTGCGCATCCTCTCGGCGGCAGGAG
AACCCACCATGTCTGCAGACTCTGCTTGGGATTCGCAGGGCGGCGTGACCTGGCCGGAAC
TGGGACTGCAGCGCGCTCTCAGCCGCTGGCTCTTGGTGACAGATTTGCCAGGGTGTCCTT
CTGCCAAGTGGGCACCCGGGGGCAGAGTCGCTGGCTCCGCTTCAGGTGCCAGCACGCATG
CGCAGAGCCCAAGCAGTCCAGAGACAGGAGTGGGTCGCGCCGGCGGGAGCCTCCGCGCAG
AGCTGCGGGCGAGAGCATCCTTCCCGAAGGGACTGGGTCCGTCCGGGTCTGAGGGAGAAA
CACCAGCTTGTCAGATTCGGGCAGGGGGCCTCCACATCTCAAAGGAAGCTTGTGTTCTTT
TCTGGTGAGAAAAAGGGTAGCCACAGTGGTGATTCACGTGGCGATTGCTTACTTTGATGG
AGCGCCTCCCACGTGCTAAGAAAGAGCCGCTGGTTTTTCCTTCTAGCTCTTTCTTCCTTG
ATCTTGACCTTCTCCCAGCTTCTGCCTTCTCAGATGAACAGTCCCTACTCGTGGAATTCT
GTTGAGTTCCCAAGATGCTGTGGCTCTTTGTGCCCAGAGGAGGACCTCTCAGCAGCGCTG
ACCTGACTCGCCGGCTCTGGGCCTGGGGCTTCAGGAGCTCTGCTGAGGCCCATGTGGCCA
CCCTTGGCTACCCCCGCATTCCCTTTTCTTAAAGCAGAACTAAAAAGAGACAAATTCCCA
GAAGCCTAGCTTTTTCCTAAGAACTTGCAGAAAGAGCTGTGCCCTAAGTGGGAGTGCCGG
CCGAGCACAGGTCAGACGAAAGCGGGCCCTGGGTCCACTCTGCGAGGCCCAGCTCCGCGC
CTTGTTCGGGCTGAACTGGTCACCAAAAAAGAAGGTAACAGCTGTGCTCTTAGGATTTGG
GATGGAGGCTTCACCTAGAGAGTCACAGGGTTTCAGCCCATCTCAACCAGGTGTCAGGGT
CTTTAAAATAATCTCAGGCCTCACCCTTGGCTCCACTCACAGCCAACCAAGACCATTTAT
TTGGAAAAGCCAGCTCCCCCCTCCCCCAATTAGCTGTTGACACCGTTGCTCCCTGCTGAG
TTGGATTGTTGATTTGTAGTTCAGAGGTACAGTTAGTTGGTAATGAGACTGTTACTTGAT
GCCACCAGCCTGAAATGCAACCACTTAGAAATAAAACAGGCATCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTTTTCCAGCGTGTCCCGAGTCACACAACCCAAGTGTCCAACCTCTCTGTGGTGCCTT
GTTTTCTGCATTAACTCCTCAGCTAGCGCCCTAGGGTGCGCATCCTCTCGGCGGCAGGAG
AACCCACCATGTCTGCAGACTCTGCTTGGGATTCGCAGGGCGGCGTGACCTGGCCGGAAC
TGGGACTGCAGCGCGCTCTCAGCCGCTGGCTCTTGGTGACAGATTTGCCAGGGTGTCCTT
CTGCCAAGTGGGCACCCGGGGGCAGAGTCGCTGGCTCCGCTTCAGGTGCCAGCACGCATG
CGCAGAGCCCAAGCAGTCCAGAGACAGGAGTGGGTCGCGCCGGCGGGAGCCTCCGCGCAG
AGCTGCGGGCGAGAGCATCCTTCCCGAAGGGACTGGGTCCGTCCGGGTCTGAGGGAGAAA
CACCAGCTTGTCAGATTCGGGCAGGGGGCCTCCACATCTCAAAGGAAGCTTGTGTTCTTT
TCTGGTGAGAAAAAGGGTAGCCACAGTGGTGATTCACGTGGCGATTGCTTACTTTGATGG
AGCGCCTCCCACGTGCTAAGAAAGAGCCGCTGGTTTTTCCTTCTAGCTCTTTCTTCCTTG
ATCTTGACCTTCTCCCAGCTTCTGCCTTCTCAGATGAACAGTCCCTACTCGTGGAATTCT
GTTGAGTTCCCAAGATGCTGTGGCTCTTTGTGCCCAGAGGAGGACCTCTCAGCAGCGCTG
ACCTGACTCGCCGGCTCTGGGCCTGGGGCTTCAGGAGCTCTGCTGAGGCCCATGTGGCCA
CCCTTGGCTACCCCCGCATTCCCTTTTCTTAAAGCAGAACTAAAAAGAGACAAATTCCCA
GAAGCCTAGCTTTTTCCTAAGAACTTGCAGAAAGAGCTGTGCCCTAAGTGGGAGTGCCGG
CCGAGCACAGGTCAGACGAAAGCGGGCCCTGGGTCCACTCTGCGAGGCCCAGCTCCGCGC
CTTGTTCGGGCTGAACTGGTCACCAAAAAAGAAGGTAACAGCTGTGCTCTTAGGATTTGG
GATGGAGGCTTCACCTAGAGAGTCACAGGGTTTCAGCCCATCTCAACCAGGTGTCAGGGT
CTTTAAAATAATCTCAGGCCTCACCCTTGGCTCCACTCACAGCCAACCAAGACCATTTAT
TTGGAAAAGCCAGCTCCCCCCTCCCCCAATTAGCTGTTGACACCGTTGCTCCCTGCTGAG
TTGGATTGTTGATTTGTAGTTCAGAGGTACAGTTAGTTGGTAATGAGACTGTTACTTGAT
GCCACCAGCCTGAAATGCAACCACTTAGAAATAAAACAGGCATCTCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1017-1130, - strand, RNAz p=0.589434

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1017-1130, - strand, RNAz p=0.589434

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1308, gnl|bosTau2|chr19 (16506223-16507569)
               

               
               1-1308, gnl|Hg17|chr17 (650865-649342)
               

               
               1-1308, gnl|Mm7|chr11 (76340072-76338806)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1308, gnl|bosTau2|chr19 (16506223-16507569)
               

               
               1-1308, gnl|Hg17|chr17 (650865-649342)
               

               
               1-1308, gnl|Mm7|chr11 (76340072-76338806)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               eru (0.240096)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               clu (0.119646)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               clu (0.119646)

	1-1308, gnl\|bosTau2\|chr19 (16506223-16507569)
	1-1308, gnl\|Hg17\|chr17 (650865-649342)
	1-1308, gnl\|Mm7\|chr11 (76340072-76338806)

	eru (0.240096)
	nep (0.183925)
	fty (0.17584)
	ton (0.1755)
	mcp (0.170648)
	eye (0.170503)
	pla (0.133672)
	cly (0.120642)
	clu (0.119646)