Non-Coding RNA Search

Ss1.1-Pig4-TMW8051I07.3

Sequence:


               
               CATCTGCCTATGCACTCATTCATTCATTCATTCAGTTTCAACAAGATATTAAGTGCTTAC
TGCATTCCAAGAACTACGCAGGGCTCTGAAAACACAGGGACAAGCAAATCCAAACATACT
TCTGAGACAGAACCCACTCCCCACAGAGGGGCCACCAGCACAGTACAGGGGGACAAGGGG
CCAGAGGCTGGACAAATGGTCACCTCCTGCCTCAACGGAAAACTGTCTTTAGGCAGGTTC
TGGGTCACACCTCTGGGGCTGGCAGGATGCTATGCAAGCCTCATGGAGGAAAGTGGGTCT
GGGTTCCCCAAGCTTTCAACTCAGGTGGCTTTCCTATAGTTCCCTTGTAGCCACAATGGA
AACAAACAAAACCCCTTAGAACCGGAAATCTGGAAAGTCTTATTCCCAAGCCATGCATGA
ATTTCCTTCCCCCAAAAGCTTCAGAATGGGTATCTGAAATGACCTGGCTGGTCTCCACTG
GTGTATAGCACTCAGTGCCCACATGTATCTGCGATGCCAAGGTTTTGTGAAACAGGAGAG
CTGCCTTTTCCCCCATGTCATGACGTGCCCCAGAGAAGTGGGAAAGAGGCGACGGCATGA
GTGAGAAAATACCCAGTCTTCTAAACCCCGTCTGTAGATTCAGCCCTCGCTTGGTGCTTT
TGACTGGTGATTCAAGAACAACAACAAAGAAGATTAGCTGAGACATCCTAGAAGCAGCTA
TTAGGACCAAATATATTACTGGTAACAACTGCCTTTGAGGGAACTGTAGTTTGCATATTT
TAGGACATTTTTATAAAGTACTGTAATTCTTTCATGGAGGGGCTATGGATGGAGACAGAC
TAACTCATTTTGTTACTTGCATTAAAATTACTTTGGGACTCTGTTCAAAAGTGAGTTTGG
AGAAGGCTTGATTTGTTGCTTGGCATGGATGTAAATACTCATACCTGAATATGGGAGACT
TGGAGACGCCCCCCCGGCCCCACACTGTCTGCTATGGGTTGTGCACCTGTGCGTATCCCT
AATCACAGGATGAAGTCCTAGGATGCTCTGTATTTGCTGATGGTGAAGAAACCTAGACCC
CCAAGCCCACACATAAGCACACTAAGCATGGTAGCTTGAATAGAAGCTGTAGCATCATTT
AAAATCTGCCTGGGTGGGAATTACTAAACTCGCTAATAGTTGAAAGGTGACTTACAATAC
AGGAGGTTGGCTAGTTTCATATATTAGGGGGCGGTGGTGGTGCGAGGAAGGGCCTAGAGG
CAAAGTTTGAATCTTGTTTTGGGGACAAATGTGATCTTAGAGTAGTTAGAGACTTTCTAC
TTAATGTGCCTTTAAAGTAGTCCATTTTCTATGTTTTGTATAATCTGAAACTGTACATTG
AAAAATAAAGTTTAAAACCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCTGCCTATGCACTCATTCATTCATTCATTCAGTTTCAACAAGATATTAAGTGCTTAC
TGCATTCCAAGAACTACGCAGGGCTCTGAAAACACAGGGACAAGCAAATCCAAACATACT
TCTGAGACAGAACCCACTCCCCACAGAGGGGCCACCAGCACAGTACAGGGGGACAAGGGG
CCAGAGGCTGGACAAATGGTCACCTCCTGCCTCAACGGAAAACTGTCTTTAGGCAGGTTC
TGGGTCACACCTCTGGGGCTGGCAGGATGCTATGCAAGCCTCATGGAGGAAAGTGGGTCT
GGGTTCCCCAAGCTTTCAACTCAGGTGGCTTTCCTATAGTTCCCTTGTAGCCACAATGGA
AACAAACAAAACCCCTTAGAACCGGAAATCTGGAAAGTCTTATTCCCAAGCCATGCATGA
ATTTCCTTCCCCCAAAAGCTTCAGAATGGGTATCTGAAATGACCTGGCTGGTCTCCACTG
GTGTATAGCACTCAGTGCCCACATGTATCTGCGATGCCAAGGTTTTGTGAAACAGGAGAG
CTGCCTTTTCCCCCATGTCATGACGTGCCCCAGAGAAGTGGGAAAGAGGCGACGGCATGA
GTGAGAAAATACCCAGTCTTCTAAACCCCGTCTGTAGATTCAGCCCTCGCTTGGTGCTTT
TGACTGGTGATTCAAGAACAACAACAAAGAAGATTAGCTGAGACATCCTAGAAGCAGCTA
TTAGGACCAAATATATTACTGGTAACAACTGCCTTTGAGGGAACTGTAGTTTGCATATTT
TAGGACATTTTTATAAAGTACTGTAATTCTTTCATGGAGGGGCTATGGATGGAGACAGAC
TAACTCATTTTGTTACTTGCATTAAAATTACTTTGGGACTCTGTTCAAAAGTGAGTTTGG
AGAAGGCTTGATTTGTTGCTTGGCATGGATGTAAATACTCATACCTGAATATGGGAGACT
TGGAGACGCCCCCCCGGCCCCACACTGTCTGCTATGGGTTGTGCACCTGTGCGTATCCCT
AATCACAGGATGAAGTCCTAGGATGCTCTGTATTTGCTGATGGTGAAGAAACCTAGACCC
CCAAGCCCACACATAAGCACACTAAGCATGGTAGCTTGAATAGAAGCTGTAGCATCATTT
AAAATCTGCCTGGGTGGGAATTACTAAACTCGCTAATAGTTGAAAGGTGACTTACAATAC
AGGAGGTTGGCTAGTTTCATATATTAGGGGGCGGTGGTGGTGCGAGGAAGGGCCTAGAGG
CAAAGTTTGAATCTTGTTTTGGGGACAAATGTGATCTTAGAGTAGTTAGAGACTTTCTAC
TTAATGTGCCTTTAAAGTAGTCCATTTTCTATGTTTTGTATAATCTGAAACTGTACATTG
AAAAATAAAGTTTAAAACCAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               8-1402, gnl|bosTau2|chr25 (9121512-9122941)
               

               
               8-1402, gnl|Hg17|chr16 (10531697-10529935)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-1402, gnl|bosTau2|chr25 (9121512-9122941)
               

               
               8-1402, gnl|Hg17|chr16 (10531697-10529935)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

Help | Less info


               
               cmu (0.931966)
               

               
               bla (0.746083)
               

               
               clu (0.598229)
               

               
               csk (0.562984)
               

               
               cut (0.509771)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               cje (0.330469)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               hlv (0.278513)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               ski (0.146735)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.931966)
               

               
               bla (0.746083)
               

               
               clu (0.598229)
               

               
               csk (0.562984)
               

               
               cut (0.509771)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               cje (0.330469)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               hlv (0.278513)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               ski (0.146735)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	8-1402, gnl\|bosTau2\|chr25 (9121512-9122941)
	8-1402, gnl\|Hg17\|chr16 (10531697-10529935)

	cmu (0.931966)
	bla (0.746083)
	clu (0.598229)
	csk (0.562984)
	cut (0.509771)
	nms (0.427716)
	amn (0.417711)
	cje (0.330469)
	liv (0.292569)
	lin (0.291206)
	hlv (0.278513)
	cbe (0.239234)
	ece (0.229305)
	sag (0.182715)
	sto (0.179824)
	ton (0.1755)
	rec (0.17307)
	nje (0.16592)
	ski (0.146735)
	che (0.136314)
	nmm (0.132802)
	cov (0.132153)
	ova (0.129132)
	ebs (0.118301)
	jca (0.11396)
	cty (0.10408)