Ss1.1-Pig4-TMW8051I08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCACACTGCTTCTCTGGATCACAAAGGCCCTACTGCTCAGATACCATCCTCTCAGCTC CTGCCTTACAGATCAGCTCATGGGCCTCCTGAGTGATCCAGAACTAGGCCCAGCAGCAGC TGATGGCTTCTCTCTGCTCATGTCTGACTGCACTGACGTGCTGACTCGTGCTGGCCACGC CGAGGTGCGGCTCATGTTCCGCCAGCGGTTCTTCACAGATAACGTGCCTGCTTTGGTCCG GGGCTTCCATGCTGCTCCCCAAGATGTGAAGCCAAATTACCTGAAAGGTCTGTCTCATGT ACTTAACAGGCTACCAAAGCCTGTGCTCTTGCCGGAGCTGCCCACGCTGCTTTCCTTGCT GCTGGAGGCCCTGTCCTGCCCCGACTCCGTGGTACAGCTCTCCACCCTCAGCTGCCTTCA GCCTCTTCTACTGGAAGCACCCCAGATCATGAGTCTTCATGTTGACACCCTTGTCACAAA GTTTCTGAACCTCAGCTCCAGTCCTTCCATGGCTGTCCGGATTGCCGCACTGCAGTGTAT GCACGCTCTTACTCGCCTGCCCACCCCCGTGCTGCTGCCGTACAAACCACAGGTGATCCG GGCCTTAGCCACACCCCTGGATGACAAGAAGAGACTGGTGCGTAAGGAGGCAGTGTTAGC CAGGGGAGAATGGTTTCTGCTGGGGAGTCCTGGCAGCTGAGTTCTCCATTCTGGTCTAGA CTGTTCTGACAATCTAACCTGAAACTACTAACATCAGCGAGCCATCTTGCCCAAGGCAGG GAGACCACTGGCCTCTGACTGCCCTTCCCAGATACAGCACAAATGCTGGGCCTCTGTCAC ATGACTGTACAAGAAACATAGGATTCCTGATTTCTAATGGATTTGGATTTGTGAAGTAAC CGAGTGTGAGACTACTTGTGTTTGAAGAATGATCTTGCTCTTGGGGCCCTTCCATTTATA AGTCAGGAAAGAGGAGACGTGCTGCTGAGGGTGAATGCGGATGAGTGTGGCCCTGCAGAC CAGGGATGGGGCGGGGGCGGGGGGGGGTGTTCCTGCTGGAGAATAAAGATTTCTTTTGGT AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCACACTGCTTCTCTGGATCACAAAGGCCCTACTGCTCAGATACCATCCTCTCAGCTC CTGCCTTACAGATCAGCTCATGGGCCTCCTGAGTGATCCAGAACTAGGCCCAGCAGCAGC TGATGGCTTCTCTCTGCTCATGTCTGACTGCACTGACGTGCTGACTCGTGCTGGCCACGC CGAGGTGCGGCTCATGTTCCGCCAGCGGTTCTTCACAGATAACGTGCCTGCTTTGGTCCG GGGCTTCCATGCTGCTCCCCAAGATGTGAAGCCAAATTACCTGAAAGGTCTGTCTCATGT ACTTAACAGGCTACCAAAGCCTGTGCTCTTGCCGGAGCTGCCCACGCTGCTTTCCTTGCT GCTGGAGGCCCTGTCCTGCCCCGACTCCGTGGTACAGCTCTCCACCCTCAGCTGCCTTCA GCCTCTTCTACTGGAAGCACCCCAGATCATGAGTCTTCATGTTGACACCCTTGTCACAAA GTTTCTGAACCTCAGCTCCAGTCCTTCCATGGCTGTCCGGATTGCCGCACTGCAGTGTAT GCACGCTCTTACTCGCCTGCCCACCCCCGTGCTGCTGCCGTACAAACCACAGGTGATCCG GGCCTTAGCCACACCCCTGGATGACAAGAAGAGACTGGTGCGTAAGGAGGCAGTGTTAGC CAGGGGAGAATGGTTTCTGCTGGGGAGTCCTGGCAGCTGAGTTCTCCATTCTGGTCTAGA CTGTTCTGACAATCTAACCTGAAACTACTAACATCAGCGAGCCATCTTGCCCAAGGCAGG GAGACCACTGGCCTCTGACTGCCCTTCCCAGATACAGCACAAATGCTGGGCCTCTGTCAC ATGACTGTACAAGAAACATAGGATTCCTGATTTCTAATGGATTTGGATTTGTGAAGTAAC CGAGTGTGAGACTACTTGTGTTTGAAGAATGATCTTGCTCTTGGGGCCCTTCCATTTATA AGTCAGGAAAGAGGAGACGTGCTGCTGAGGGTGAATGCGGATGAGTGTGGCCCTGCAGAC CAGGGATGGGGCGGGGGCGGGGGGGGGTGTTCCTGCTGGAGAATAAAGATTTCTTTTGGT AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 385-512, - strand, RNAz p=0.703487 | |
| 672-788, - strand, RNAz p=0.689227 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 385-512, - strand, RNAz p=0.703487 | |
| 672-788, - strand, RNAz p=0.689227 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 74-271, gnl|bosTau2|chr26 (10618158-10618355) | |
| 74-271, gnl|canFam2|chr28 (13748726-13748930) | |
| 74-271, gnl|danRer3|chr17 (33275652-33275459) | |
| 74-271, gnl|dasNov1|scaffold_11390 (36175-36377) | |
| 74-271, gnl|echTel1|scaffold_319824 (52739-52943) | |
| 74-271, gnl|fr1|chrUn (30152898-30152707) | |
| 74-271, gnl|galGal2|chr6 (21465741-21465539) | |
| 74-271, gnl|hg17|chr10 (99209786-99209988) | |
| 74-271, gnl|Hg17|chr10 (99209982-99209785) | |
| 74-271, gnl|loxAfr1|scaffold_4202 (90540-90336) | |
| 74-271, gnl|mm7|chr19 (41840752-41840951) | |
| 74-271, gnl|Mm7|chr19 (41840945-41840752) | |
| 74-271, gnl|monDom2|scaffold_14 (24980574-24980373) | |
| 74-271, gnl|oryCun1|scaffold_192560 (1711-1910) | |
| 74-271, gnl|panTro1|chr8 (100946703-100946905) | |
| 74-271, gnl|rheMac2|chr9 (97050457-97050659) | |
| 74-271, gnl|tetNig1|chr2 (3044962-3044758) | |
| 74-271, gnl|xenTro1|scaffold_51 (592803-593001) | |
| 346-512, gnl|bosTau2|chr26 (10618887-10619053) | |
| 346-512, gnl|Hg17|chr10 (99209274-99209108) | |
| 346-512, gnl|Mm7|chr19 (41839463-41839297) | |
| 672-1082, gnl|bosTau2|chr26 (10619664-10620053) | |
| 672-1082, gnl|canFam2|chr28 (13746838-13747128) | |
| 672-1082, gnl|dasNov1|scaffold_11390 (34439-34740) | |
| 672-1082, gnl|echTel1|scaffold_319824 (50956-51236) | |
| 672-1082, gnl|hg17|chr10 (99208032-99208350) | |
| 672-1082, gnl|Hg17|chr10 (99208467-99208071) | |
| 672-1082, gnl|mm7|chr19 (41838009-41838308) | |
| 672-1082, gnl|Mm7|chr19 (41838420-41838046) | |
| 672-1082, gnl|monDom2|scaffold_14 (24982172-24981833) | |
| 672-1082, gnl|oryCun1|scaffold_192560 (15-304) | |
| 672-1082, gnl|panTro1|chr8 (100944949-100945267) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 74-271, gnl|bosTau2|chr26 (10618158-10618355) | |
| 74-271, gnl|canFam2|chr28 (13748726-13748930) | |
| 74-271, gnl|danRer3|chr17 (33275652-33275459) | |
| 74-271, gnl|dasNov1|scaffold_11390 (36175-36377) | |
| 74-271, gnl|echTel1|scaffold_319824 (52739-52943) | |
| 74-271, gnl|fr1|chrUn (30152898-30152707) | |
| 74-271, gnl|galGal2|chr6 (21465741-21465539) | |
| 74-271, gnl|hg17|chr10 (99209786-99209988) | |
| 74-271, gnl|Hg17|chr10 (99209982-99209785) | |
| 74-271, gnl|loxAfr1|scaffold_4202 (90540-90336) | |
| 74-271, gnl|mm7|chr19 (41840752-41840951) | |
| 74-271, gnl|Mm7|chr19 (41840945-41840752) | |
| 74-271, gnl|monDom2|scaffold_14 (24980574-24980373) | |
| 74-271, gnl|oryCun1|scaffold_192560 (1711-1910) | |
| 74-271, gnl|panTro1|chr8 (100946703-100946905) | |
| 74-271, gnl|rheMac2|chr9 (97050457-97050659) | |
| 74-271, gnl|tetNig1|chr2 (3044962-3044758) | |
| 74-271, gnl|xenTro1|scaffold_51 (592803-593001) | |
| 346-512, gnl|bosTau2|chr26 (10618887-10619053) | |
| 346-512, gnl|Hg17|chr10 (99209274-99209108) | |
| 346-512, gnl|Mm7|chr19 (41839463-41839297) | |
| 672-1082, gnl|bosTau2|chr26 (10619664-10620053) | |
| 672-1082, gnl|canFam2|chr28 (13746838-13747128) | |
| 672-1082, gnl|dasNov1|scaffold_11390 (34439-34740) | |
| 672-1082, gnl|echTel1|scaffold_319824 (50956-51236) | |
| 672-1082, gnl|hg17|chr10 (99208032-99208350) | |
| 672-1082, gnl|Hg17|chr10 (99208467-99208071) | |
| 672-1082, gnl|mm7|chr19 (41838009-41838308) | |
| 672-1082, gnl|Mm7|chr19 (41838420-41838046) | |
| 672-1082, gnl|monDom2|scaffold_14 (24982172-24981833) | |
| 672-1082, gnl|oryCun1|scaffold_192560 (15-304) | |
| 672-1082, gnl|panTro1|chr8 (100944949-100945267) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| elu (0.385356) | |
| vin (0.332557) | |
| sto (0.179824) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| cki (0.165235) | |
| cst (0.140036) | |
| che (0.136314) | |
| med (0.116252) | |
| ecc (0.115035) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| vin (0.332557) | |
| sto (0.179824) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| cki (0.165235) | |
| cst (0.140036) | |
| che (0.136314) | |
| med (0.116252) | |
| ecc (0.115035) |