Ss1.1-Pig4-TMW8051I09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTATGGCACAAACGAAAAAGAGCCGCAGACAGAAGCAGTGGCACAACTCGCTCAAGAA CTGTATAATAGTGGGCTCCTTAGCACCCTGGTAGCTGATCTACAGCTCATTGACTTTGAG GGCAAAAAAGATGTGGCTCAAATTTTCAACAACATTCTCAGAAGACAAATTGGTACAAGA ACTCCTACTGTTGAATACATCTGCACCCAACAGAATATTTTGTTCATGTTATTGAAAGGG TATGAATCTCCAGAAATAGCTCTAAATTGTGGGATAATGTTAAGAGAGTGCATCAGACAT GAACCACTTGCAAAAATCATTTTGTGGTCAGAACAGTTTTATGATTTCTTCAGATATGTT GAAATGTCAACATTTGACATAGCTTCAGATGCATTTGCCACATTCAAGGATTTACTTACA AGACATAAATTGCTCAGTGCAGAATTTTTGGAACAACATTATGATAGATTCTTCAGTGAG TATGAGAAGTTACTTCATTCAGAAAATTATGTGACAAAAAGGCAGTCACTCAAGCTTCTC GGTGAACTACTATTAGACAGACACAACTTCACAATTATGACAAAATACATCAGTAAACCT GAGAACCTCAAATTAATGATGAACCTTCTACGAGACAAAAGCCGTAACATCCAGTTTGAG GCCTTTCACGTTTTTAAGGTGTTTGTAGCCAATCCTAACAAGACGCAGCCCATCCTAGAC ATCCTCCTCAAGAACCAGACCAAACTTATAGAGTTCCTCAGCAAGTTCCAGAATGACAGG ACCGAGGACGAACAGTTTAATGATGAGAAGACCTATTTAGTCAAACAGATCAGGGATTTG AAGAGACCAGCGCAGCAAGAAGCCTAATTTCCAATAAACATCTAAAATATTAAACCCAAA TTCAGCATTCGCTGTTAGCTATTCAGCATCAGGCACTGTTATCGATTCATGAGGAACATT ACTGCTAATCTGCTGTTAAGTGAACGGTTTTCATTTTCCCTTTTTTTGTTTTTTTTTTTC AGTCCAAGTTGGAGAACGTAGCTGCTGCTTTCTTGCACACTAGAGCACACGTGGACTTTT TCTTGATCTTTGTGTCATTTCAGATTTCAAAGACTCCGTTTGCTGTAGAAGTTCTGAACA TGGCTAGGTTCGTGAAGGCAAATGCATGGATGATAGTGTGTTTTAGGGAAGGAAGGCATT GATATTATCAGAGTAAACCTGCCCGTTTGCATTTATCTTTGTTAAAGGTCTGAGCATGGA TTCTTGATAAGATTGTATGCCTTCACTAATGGAAGACCGTGCAGAGCTTTATTTGAAATC ATAGGGGAACTGTATCCAAGATGTGAGCCTCTTGGGCGGATAAAGTTGACACATGAATAA ATTGATACTGAAACTTAGCAACTTCTTAAAAGTGTGAAGCTTCACAAGGTCATAAGGAAA ATGTATATATGCTTTTCACAGCTTTCTAGAATTTTTTGACATTTGATTTTTCTTGAGACT CGTAAACCTGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTATGGCACAAACGAAAAAGAGCCGCAGACAGAAGCAGTGGCACAACTCGCTCAAGAA CTGTATAATAGTGGGCTCCTTAGCACCCTGGTAGCTGATCTACAGCTCATTGACTTTGAG GGCAAAAAAGATGTGGCTCAAATTTTCAACAACATTCTCAGAAGACAAATTGGTACAAGA ACTCCTACTGTTGAATACATCTGCACCCAACAGAATATTTTGTTCATGTTATTGAAAGGG TATGAATCTCCAGAAATAGCTCTAAATTGTGGGATAATGTTAAGAGAGTGCATCAGACAT GAACCACTTGCAAAAATCATTTTGTGGTCAGAACAGTTTTATGATTTCTTCAGATATGTT GAAATGTCAACATTTGACATAGCTTCAGATGCATTTGCCACATTCAAGGATTTACTTACA AGACATAAATTGCTCAGTGCAGAATTTTTGGAACAACATTATGATAGATTCTTCAGTGAG TATGAGAAGTTACTTCATTCAGAAAATTATGTGACAAAAAGGCAGTCACTCAAGCTTCTC GGTGAACTACTATTAGACAGACACAACTTCACAATTATGACAAAATACATCAGTAAACCT GAGAACCTCAAATTAATGATGAACCTTCTACGAGACAAAAGCCGTAACATCCAGTTTGAG GCCTTTCACGTTTTTAAGGTGTTTGTAGCCAATCCTAACAAGACGCAGCCCATCCTAGAC ATCCTCCTCAAGAACCAGACCAAACTTATAGAGTTCCTCAGCAAGTTCCAGAATGACAGG ACCGAGGACGAACAGTTTAATGATGAGAAGACCTATTTAGTCAAACAGATCAGGGATTTG AAGAGACCAGCGCAGCAAGAAGCCTAATTTCCAATAAACATCTAAAATATTAAACCCAAA TTCAGCATTCGCTGTTAGCTATTCAGCATCAGGCACTGTTATCGATTCATGAGGAACATT ACTGCTAATCTGCTGTTAAGTGAACGGTTTTCATTTTCCCTTTTTTTGTTTTTTTTTTTC AGTCCAAGTTGGAGAACGTAGCTGCTGCTTTCTTGCACACTAGAGCACACGTGGACTTTT TCTTGATCTTTGTGTCATTTCAGATTTCAAAGACTCCGTTTGCTGTAGAAGTTCTGAACA TGGCTAGGTTCGTGAAGGCAAATGCATGGATGATAGTGTGTTTTAGGGAAGGAAGGCATT GATATTATCAGAGTAAACCTGCCCGTTTGCATTTATCTTTGTTAAAGGTCTGAGCATGGA TTCTTGATAAGATTGTATGCCTTCACTAATGGAAGACCGTGCAGAGCTTTATTTGAAATC ATAGGGGAACTGTATCCAAGATGTGAGCCTCTTGGGCGGATAAAGTTGACACATGAATAA ATTGATACTGAAACTTAGCAACTTCTTAAAAGTGTGAAGCTTCACAAGGTCATAAGGAAA ATGTATATATGCTTTTCACAGCTTTCTAGAATTTTTTGACATTTGATTTTTCTTGAGACT CGTAAACCTGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 33-143, + strand, RNAz p=0.567218 | |
| 280-399, + strand, RNAz p=0.949448 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 33-143, + strand, RNAz p=0.567218 | |
| 280-399, + strand, RNAz p=0.949448 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-154, gnl|bosTau2|chr2 (73342077-73341926) | |
| 1-154, gnl|canFam2|chr25 (45774721-45774929) | |
| 1-154, gnl|danRer3|chr20 (17480539-17480736) | |
| 1-154, gnl|dasNov1|scaffold_1403 (54578-54380) | |
| 1-154, gnl|echTel1|scaffold_277991 (39466-39666) | |
| 1-154, gnl|fr1|chrUn (219703229-219703408) | |
| 1-154, gnl|galGal2|chr9 (8219998-8220172) | |
| 1-154, gnl|hg17|chr2 (231481091-231481290) | |
| 1-154, gnl|Hg17|chr2 (231481137-231481288) | |
| 1-154, gnl|loxAfr1|scaffold_12976 (17395-17198) | |
| 1-154, gnl|mm7|chr1 (85736043-85736238) | |
| 1-154, gnl|Mm7|chr1 (85736089-85736240) | |
| 1-154, gnl|monDom2|scaffold_174 (899562-899389) | |
| 1-154, gnl|oryCun1|scaffold_173918 (6477-6676) | |
| 1-154, gnl|panTro1|chr13 (122110002-122110201) | |
| 1-154, gnl|rheMac2|chr12 (94648780-94648979) | |
| 1-154, gnl|rn3|chr9 (84755956-84756152) | |
| 1-154, gnl|tetNig1|chr16 (7673035-7673207) | |
| 1-154, gnl|xenTro1|scaffold_108 (1499162-1499345) | |
| 215-409, gnl|bosTau2|chr2 (73331933-73331741) | |
| 215-409, gnl|Hg17|chr2 (231488912-231489118) | |
| 215-409, gnl|Mm7|chr1 (85742889-85743088) | |
| 677-1512, gnl|bosTau2|chr2 (73313802-73312958) | |
| 677-1512, gnl|Hg17|chr2 (231508734-231509586) | |
| 677-1512, gnl|Mm7|chr1 (85749752-85750558) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-154, gnl|bosTau2|chr2 (73342077-73341926) | |
| 1-154, gnl|canFam2|chr25 (45774721-45774929) | |
| 1-154, gnl|danRer3|chr20 (17480539-17480736) | |
| 1-154, gnl|dasNov1|scaffold_1403 (54578-54380) | |
| 1-154, gnl|echTel1|scaffold_277991 (39466-39666) | |
| 1-154, gnl|fr1|chrUn (219703229-219703408) | |
| 1-154, gnl|galGal2|chr9 (8219998-8220172) | |
| 1-154, gnl|hg17|chr2 (231481091-231481290) | |
| 1-154, gnl|Hg17|chr2 (231481137-231481288) | |
| 1-154, gnl|loxAfr1|scaffold_12976 (17395-17198) | |
| 1-154, gnl|mm7|chr1 (85736043-85736238) | |
| 1-154, gnl|Mm7|chr1 (85736089-85736240) | |
| 1-154, gnl|monDom2|scaffold_174 (899562-899389) | |
| 1-154, gnl|oryCun1|scaffold_173918 (6477-6676) | |
| 1-154, gnl|panTro1|chr13 (122110002-122110201) | |
| 1-154, gnl|rheMac2|chr12 (94648780-94648979) | |
| 1-154, gnl|rn3|chr9 (84755956-84756152) | |
| 1-154, gnl|tetNig1|chr16 (7673035-7673207) | |
| 1-154, gnl|xenTro1|scaffold_108 (1499162-1499345) | |
| 215-409, gnl|bosTau2|chr2 (73331933-73331741) | |
| 215-409, gnl|Hg17|chr2 (231488912-231489118) | |
| 215-409, gnl|Mm7|chr1 (85742889-85743088) | |
| 677-1512, gnl|bosTau2|chr2 (73313802-73312958) | |
| 677-1512, gnl|Hg17|chr2 (231508734-231509586) | |
| 677-1512, gnl|Mm7|chr1 (85749752-85750558) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| tbr (0.308356) | |
| spl (0.286369) | |
| tes (0.207814) | |
| isp (0.150376) | |
| liv (0.146284) | |
| eep (0.122564) | |
| ldo (0.0970026) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.308356) | |
| spl (0.286369) | |
| tes (0.207814) | |
| isp (0.150376) | |
| liv (0.146284) | |
| eep (0.122564) | |
| ldo (0.0970026) |