Ss1.1-Pig4-TMW8051I12.5.5
|
CCTCCGTCGTAGGCCCCACGGTGGCCCGCAGCCTGCGGGCGGCGCTGTGGCCCGGCGAGG
GGCCCCAGGGAGCCGCCATAGTCGCCCGCCTTCCGCAACCTAACGTCTCCGCCGCCGGCT
TCGCGCCGCCGCCATGGCAGACGTGGAAGACGGCGAGGAGCCCTGCGCCCTGTCCTCTCA
CTCCGGTAGCTCAGGAACCAAGTCGGGAGGCGACAAGATGTTCTCTCTGAAGAAGTGGAA
CGCGGTGGCCATGTGGAGCTGGGACGTGGAGTGCGATACGTGCGCCATCTGCAGGGTCCA
GGTGATGGATGCCTGTCTTAGATGTCAAGCTGAAAACAAACAGGAGGATTGTGTTGTGGT
CTGGGGAGAATGTAATCATTCCTTCCACAACTGCTGCATGTCCCTGTGGGTGAAACAGAA
CAATCGCTGCCCTCTCTGCCAGCAGGACTGGGTGGTCCAAAGAATCGGCAAATGAGAGCG
GTGGAAGGTATTCTTCATGCAGTTGTGTGGAGCCCTGGGGATTCTTGTTATCAAGTGCTC
TACCAAGGCTAGAACTCTCCAAGGGGACTAATTCTTCTAATAGGAGGCAATGGATCTGTG
GTCCCTGGGACTCATCAAAGGCATGGTTTAGTCTTTTTCAGTTTTTTTTCGGAGAGGAGG
TGTTGTTTTCAGAAATGCTCTACAATTAAGAAGATAATTTATTAAAAATGGTCTTTCCTA
CCTCTATGGTATGTGTCTCACACACTGCTTAGAAGTACTATAAAAGAGAGAGCTACAAAT
TGAACAGCCTTTATAGTTTACTTACTTATATCCAAGGGGCTATGGAAGCAGTTCCATTGA
GAAGTGGACTTTTTGCATGCTTATGGTTGATCAGTTTTTTAAGAAAGATAATGTTATAGT
AACAAATAAAGTGCAGTTTAAAACCCGACTCTTACCCTTAATCTGTTCCTAATATTTATT
TTTGGCAGGAAGGAAATGATTCATGAAATCTTTATTTGATATAATGAGAATTTTTAAGTT
TGGACCAGTGAATAGGGTAAATAAAATTTAACCTTTAGTGTGTAGGATTTCAATTGTCTT
TGAGTTTATCATCCTTTATCTTTGACTCATCAAGAAAACCATAGATCGGAGTTCCTGTCA
TGGCTCAGTGGAAAGAAATCCGACTAGGAACCACAAGGTCGTGGGTTCAATCCCTGGCCA
TGCTCAGTGGGTTAAGGATCTGGCATTGCTGTGAGCTGTGGTGTAGGTCACAGACGCAGC
TCGGATCTGGTGTGGCTGTGGCTATGGCATAGGCCGGCAGCTGTAGCTCTGATTAGACCC
CTAGCCTGGGAACCTCCATATGGTGTGAATGAAGCCCTAAAAAGCAGAAAAGAAAAAGAA
AAAAAAGAAAACCTAGATCATTGTTCAGTCATTGAGTGGTAAAGGACAGAAGTATTTTCA
ATTCTGGTCATGTTGTTTTGTGATTTACCTGTTTTAAGTGGAATGTTAATGAGGGGAAAT
GTTTACCATTATAGCATTGGGTCAGAAAGTTTGTTATCACAGTGTTTTAATAAATGATTT
ATTCTGTTTGCCTTATTTGAATTGTTTTATTACAAGTTTATGCACAACCTTCAGCTTAAT
ATTTATAAACTAATTTGTTTATTGAGTGAATGATTTTGCTTAATTTGAAGAAATATTCAT
TTACTCTTTCGTTGATAATAAAATTTTAACTTTAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCTCCGTCGTAGGCCCCACGGTGGCCCGCAGCCTGCGGGCGGCGCTGTGGCCCGGCGAGG
GGCCCCAGGGAGCCGCCATAGTCGCCCGCCTTCCGCAACCTAACGTCTCCGCCGCCGGCT
TCGCGCCGCCGCCATGGCAGACGTGGAAGACGGCGAGGAGCCCTGCGCCCTGTCCTCTCA
CTCCGGTAGCTCAGGAACCAAGTCGGGAGGCGACAAGATGTTCTCTCTGAAGAAGTGGAA
CGCGGTGGCCATGTGGAGCTGGGACGTGGAGTGCGATACGTGCGCCATCTGCAGGGTCCA
GGTGATGGATGCCTGTCTTAGATGTCAAGCTGAAAACAAACAGGAGGATTGTGTTGTGGT
CTGGGGAGAATGTAATCATTCCTTCCACAACTGCTGCATGTCCCTGTGGGTGAAACAGAA
CAATCGCTGCCCTCTCTGCCAGCAGGACTGGGTGGTCCAAAGAATCGGCAAATGAGAGCG
GTGGAAGGTATTCTTCATGCAGTTGTGTGGAGCCCTGGGGATTCTTGTTATCAAGTGCTC
TACCAAGGCTAGAACTCTCCAAGGGGACTAATTCTTCTAATAGGAGGCAATGGATCTGTG
GTCCCTGGGACTCATCAAAGGCATGGTTTAGTCTTTTTCAGTTTTTTTTCGGAGAGGAGG
TGTTGTTTTCAGAAATGCTCTACAATTAAGAAGATAATTTATTAAAAATGGTCTTTCCTA
CCTCTATGGTATGTGTCTCACACACTGCTTAGAAGTACTATAAAAGAGAGAGCTACAAAT
TGAACAGCCTTTATAGTTTACTTACTTATATCCAAGGGGCTATGGAAGCAGTTCCATTGA
GAAGTGGACTTTTTGCATGCTTATGGTTGATCAGTTTTTTAAGAAAGATAATGTTATAGT
AACAAATAAAGTGCAGTTTAAAACCCGACTCTTACCCTTAATCTGTTCCTAATATTTATT
TTTGGCAGGAAGGAAATGATTCATGAAATCTTTATTTGATATAATGAGAATTTTTAAGTT
TGGACCAGTGAATAGGGTAAATAAAATTTAACCTTTAGTGTGTAGGATTTCAATTGTCTT
TGAGTTTATCATCCTTTATCTTTGACTCATCAAGAAAACCATAGATCGGAGTTCCTGTCA
TGGCTCAGTGGAAAGAAATCCGACTAGGAACCACAAGGTCGTGGGTTCAATCCCTGGCCA
TGCTCAGTGGGTTAAGGATCTGGCATTGCTGTGAGCTGTGGTGTAGGTCACAGACGCAGC
TCGGATCTGGTGTGGCTGTGGCTATGGCATAGGCCGGCAGCTGTAGCTCTGATTAGACCC
CTAGCCTGGGAACCTCCATATGGTGTGAATGAAGCCCTAAAAAGCAGAAAAGAAAAAGAA
AAAAAAGAAAACCTAGATCATTGTTCAGTCATTGAGTGGTAAAGGACAGAAGTATTTTCA
ATTCTGGTCATGTTGTTTTGTGATTTACCTGTTTTAAGTGGAATGTTAATGAGGGGAAAT
GTTTACCATTATAGCATTGGGTCAGAAAGTTTGTTATCACAGTGTTTTAATAAATGATTT
ATTCTGTTTGCCTTATTTGAATTGTTTTATTACAAGTTTATGCACAACCTTCAGCTTAAT
ATTTATAAACTAATTTGTTTATTGAGTGAATGATTTTGCTTAATTTGAAGAAATATTCAT
TTACTCTTTCGTTGATAATAAAATTTTAACTTTAAAAAAAAAAAAAAA
|
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1-308, gnl|bosTau2|chr1 (80915939-80915631) |
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1-308, gnl|Hg17|chr3 (142939750-142940056) |
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1-308, gnl|Mm7|chr9 (96119977-96119682) |
| |
|
356-653, gnl|bosTau2|chr1 (80909439-80909140) |
|
356-653, gnl|Hg17|chr3 (142946698-142946997) |
|
356-653, gnl|Mm7|chr9 (96113127-96112859) |
| |
|
660-1127, gnl|bosTau2|chr1 (80909153-80908701) |
|
660-1127, gnl|Hg17|chr3 (142946984-142947439) |
|
660-1127, gnl|Mm7|chr9 (96112872-96112428) |
| |
|
1385-1701, gnl|bosTau2|chr1 (80908715-80908419) |
|
1385-1701, gnl|Hg17|chr3 (142947425-142948046) |
|
1385-1701, gnl|Mm7|chr9 (96112442-96112190) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-308, gnl|bosTau2|chr1 (80915939-80915631) |
|
1-308, gnl|Hg17|chr3 (142939750-142940056) |
|
1-308, gnl|Mm7|chr9 (96119977-96119682) |
| |
|
356-653, gnl|bosTau2|chr1 (80909439-80909140) |
|
356-653, gnl|Hg17|chr3 (142946698-142946997) |
|
356-653, gnl|Mm7|chr9 (96113127-96112859) |
| |
|
660-1127, gnl|bosTau2|chr1 (80909153-80908701) |
|
660-1127, gnl|Hg17|chr3 (142946984-142947439) |
|
660-1127, gnl|Mm7|chr9 (96112872-96112428) |
| |
|
1385-1701, gnl|bosTau2|chr1 (80908715-80908419) |
|
1385-1701, gnl|Hg17|chr3 (142947425-142948046) |
|
1385-1701, gnl|Mm7|chr9 (96112442-96112190) |
|
fco (0.628832) |
|
bfe (0.599431) |
|
fcc (0.593354) |
|
che (0.545256) |
|
ste (0.540833) |
|
hea (0.408998) |
|
ssp (0.406559) |
|
fli (0.405762) |
|
elu (0.385356) |
|
bla (0.373042) |
|
tra (0.369276) |
|
tbr (0.308356) |
|
lun (0.300978) |
|
hlv (0.278513) |
|
fce (0.271592) |
|
cty (0.20816) |
|
ldo (0.194005) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
fty (0.17584) |
|
ill (0.175593) |
|
rec (0.17307) |
|
duo (0.172801) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
cje (0.165235) |
|
mga (0.160205) |
|
fat (0.147427) |
|
lin (0.145603) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
cst (0.140036) |
|
ret (0.128733) |
|
sug (0.127291) |
|
ebs (0.118301) |
|
med (0.116252) |
|
ecc (0.115035) |
|
spc (0.113366) |
|
fco (0.628832) |
|
bfe (0.599431) |
|
fcc (0.593354) |
|
che (0.545256) |
|
ste (0.540833) |
|
hea (0.408998) |
|
ssp (0.406559) |
|
fli (0.405762) |
|
elu (0.385356) |
|
bla (0.373042) |
|
tra (0.369276) |
|
tbr (0.308356) |
|
lun (0.300978) |
|
hlv (0.278513) |
|
fce (0.271592) |
|
cty (0.20816) |
|
ldo (0.194005) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
fty (0.17584) |
|
ill (0.175593) |
|
rec (0.17307) |
|
duo (0.172801) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
cje (0.165235) |
|
mga (0.160205) |
|
fat (0.147427) |
|
lin (0.145603) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
cst (0.140036) |
|
ret (0.128733) |
|
sug (0.127291) |
|
ebs (0.118301) |
|
med (0.116252) |
|
ecc (0.115035) |
|
spc (0.113366) |
