Non-Coding RNA Search

Ss1.1-Pig4-TMW8051I21.3

Sequence:


               
               GTAATTTACAGAGTCACACAAAATACAAAGAAGAGTAAGCCTGAAGGTTTTTGGCAAAGG
AAGGTAACTCAAATGTAATAACTTTCATTTATCTGAGTGTAAATGAAAAATGTGTGTATT
CGTGAACTGGGGCCCATGTAATTATTTTCTGTGTTCCGTTTTAAGCAGGAATGGTGTAAG
CTTATTGGGAACGTGTGGAAAGGGAGATTGGAAGTGATTTTTACGCTTTTGAAATTAACC
AAAAATCCTCCACATGCGCCCTAGTCAGCTATTTCGAAGTACCATTTTTACTTGGTTAAC
AATGTACATTTTGATAACCTGTCAGGAATGAATAAAATATTTTTATTTAAAGGTGAAATT
GTTTTATGCTTCCATGAATATTTTGCTTTTCTTAGAACATATTCGTAGATGCAATACTAG
GATTTATTCCAAGATCCTTGGGAACACTTTTCTCAAAATTGATTTTGGTTAATATCAAGC
AAATCATTACCTAGGAATGAGAGGGAAACTGTTCTCAAGAACTTAGTCTCTGACTTTCTT
TAGCAGAAAGAAAATTTAGGACTTTGTATTCATGCACTGTTTAAAGGTTCATGAAGTGAT
TTCTCATTTTCTAAAGCGAGGGGAATGTCGCCGAGATGAATGAATTTGCATTTCAGAACT
GCATTTCAGTTTGGGGTTGGAAGATGCCATTGAACCAGTTTCATTCTCTAAACTTTCTAA
ACAAGAAAACAATGTAACCCAAAAGTCTGAACATTTAAAATTTATAAAATTATGTTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAATTTACAGAGTCACACAAAATACAAAGAAGAGTAAGCCTGAAGGTTTTTGGCAAAGG
AAGGTAACTCAAATGTAATAACTTTCATTTATCTGAGTGTAAATGAAAAATGTGTGTATT
CGTGAACTGGGGCCCATGTAATTATTTTCTGTGTTCCGTTTTAAGCAGGAATGGTGTAAG
CTTATTGGGAACGTGTGGAAAGGGAGATTGGAAGTGATTTTTACGCTTTTGAAATTAACC
AAAAATCCTCCACATGCGCCCTAGTCAGCTATTTCGAAGTACCATTTTTACTTGGTTAAC
AATGTACATTTTGATAACCTGTCAGGAATGAATAAAATATTTTTATTTAAAGGTGAAATT
GTTTTATGCTTCCATGAATATTTTGCTTTTCTTAGAACATATTCGTAGATGCAATACTAG
GATTTATTCCAAGATCCTTGGGAACACTTTTCTCAAAATTGATTTTGGTTAATATCAAGC
AAATCATTACCTAGGAATGAGAGGGAAACTGTTCTCAAGAACTTAGTCTCTGACTTTCTT
TAGCAGAAAGAAAATTTAGGACTTTGTATTCATGCACTGTTTAAAGGTTCATGAAGTGAT
TTCTCATTTTCTAAAGCGAGGGGAATGTCGCCGAGATGAATGAATTTGCATTTCAGAACT
GCATTTCAGTTTGGGGTTGGAAGATGCCATTGAACCAGTTTCATTCTCTAAACTTTCTAA
ACAAGAAAACAATGTAACCCAAAAGTCTGAACATTTAAAATTTATAAAATTATGTTAAAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-778, gnl|bosTau2|chr21 (42603226-42602463)
               

               
               1-778, gnl|Hg17|chr14 (95821187-95820424)
               

               
               1-778, gnl|Mm7|chr12 (103114139-103113480)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-778, gnl|bosTau2|chr21 (42603226-42602463)
               

               
               1-778, gnl|Hg17|chr14 (95821187-95820424)
               

               
               1-778, gnl|Mm7|chr12 (103114139-103113480)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mcp (0.170648)
               

               
               fat (0.147427)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               fat (0.147427)
               

               
               ebs (0.118301)

	1-778, gnl\|bosTau2\|chr21 (42603226-42602463)
	1-778, gnl\|Hg17\|chr14 (95821187-95820424)
	1-778, gnl\|Mm7\|chr12 (103114139-103113480)