Ss1.1-Pig4-TMW8051J02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGAACCTTCGTGGTGGAACAAATATCATTAAGCTGATTGACACTGTGAAGGACCCTGT GTCAAAGACACCAGCTTTGGTATTTGAATATATCAATAATACAGATTTTAAGCAACTGTA CCAGATCCTGACCGACTTTGATATCCGGTTTTATATGTATGAACTACTTAAAGCTCTGGA TTACTGCCACAGCAAGGGAATCATGCACAGGGATGTGAAACCTCACAATGTCATGATAGA TCACCAACAGAAAAAGCTGCGACTGATAGACTGGGGTTTGGCAGAATTCTATCATCCAGC TCAGGAGTACAATGTCCGAGTAGCCTCGCGGTACTTCAAGGGACCAGAGCTCCTTGTGGA CTATCAGATGTATGATTATAGCTTGGATATGTGGAGTTTGGGCTGTATGTTAGCAAGCAT GATCTTTCGAAAGGAGCCCTTCTTTCATGGACAGGATAACTATGACCAGCTTGTTCGCAT TGCCAAGGTTCTGGGTACAGATGAGCTGTATGGGTATCTGAAGAAGTATCACATAGACCT AGATCCACACTTCAACGATATCCTGGGACAACATTCACGGAAACGCTGGGAAAACTTTAT CCATAGTGAGAACAGACACCTCGTCAGCCCTGAGGCCCTAGATCTTCTGGACAAACTTCT GCGATATGACCATCAACAGAGACTGACCGCCAAAGAGGCCATGGAGCACCCGTACTTCTA CCCCGTGGTGAAGGAGCAGTCCCAGCCTTGTGCAGATAATGCTGTACTTTCCAGTGGTCT CACGGCGGCCCGATGAAGACTGGAAAGCGACGGGTCTGTTGCGGTTCCTCCCACTTTTCC ATAAGCAGAACGAGAACCAAATCAAACGTCTTAACGTGTGTAGAGCGATCACGTTCCGTG AGCAGACACAAAACGGTGGCAGGTTTGGCGAGCGCGAACTAGACCCACCGAAGGGCAGCC CACCACCGTATATCAAACCTCACTTCCGAATGTAAAAGGTTCACACGCCTTTGGCTTCCT GTTGACTTCCTCCTGACCCAGAAAGCATGGGAAATGTGAAGGGTATGCAAAAATGGTTGT TGGTTACTGTTGCTCCCCGGTGGCCCGGCTCGTCCGTGGCGGCCTGTTTCTCCAACAGAT CACGTTAACTTGCCGACCACAGACTCCGCAGTGGGGCTCGGGGCGAATACGGCATGAGGG GCGGTTACATATTATAATTTTCAAAGTATATATTATTGAATAAAAAGTTTTAAAAGAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGAACCTTCGTGGTGGAACAAATATCATTAAGCTGATTGACACTGTGAAGGACCCTGT GTCAAAGACACCAGCTTTGGTATTTGAATATATCAATAATACAGATTTTAAGCAACTGTA CCAGATCCTGACCGACTTTGATATCCGGTTTTATATGTATGAACTACTTAAAGCTCTGGA TTACTGCCACAGCAAGGGAATCATGCACAGGGATGTGAAACCTCACAATGTCATGATAGA TCACCAACAGAAAAAGCTGCGACTGATAGACTGGGGTTTGGCAGAATTCTATCATCCAGC TCAGGAGTACAATGTCCGAGTAGCCTCGCGGTACTTCAAGGGACCAGAGCTCCTTGTGGA CTATCAGATGTATGATTATAGCTTGGATATGTGGAGTTTGGGCTGTATGTTAGCAAGCAT GATCTTTCGAAAGGAGCCCTTCTTTCATGGACAGGATAACTATGACCAGCTTGTTCGCAT TGCCAAGGTTCTGGGTACAGATGAGCTGTATGGGTATCTGAAGAAGTATCACATAGACCT AGATCCACACTTCAACGATATCCTGGGACAACATTCACGGAAACGCTGGGAAAACTTTAT CCATAGTGAGAACAGACACCTCGTCAGCCCTGAGGCCCTAGATCTTCTGGACAAACTTCT GCGATATGACCATCAACAGAGACTGACCGCCAAAGAGGCCATGGAGCACCCGTACTTCTA CCCCGTGGTGAAGGAGCAGTCCCAGCCTTGTGCAGATAATGCTGTACTTTCCAGTGGTCT CACGGCGGCCCGATGAAGACTGGAAAGCGACGGGTCTGTTGCGGTTCCTCCCACTTTTCC ATAAGCAGAACGAGAACCAAATCAAACGTCTTAACGTGTGTAGAGCGATCACGTTCCGTG AGCAGACACAAAACGGTGGCAGGTTTGGCGAGCGCGAACTAGACCCACCGAAGGGCAGCC CACCACCGTATATCAAACCTCACTTCCGAATGTAAAAGGTTCACACGCCTTTGGCTTCCT GTTGACTTCCTCCTGACCCAGAAAGCATGGGAAATGTGAAGGGTATGCAAAAATGGTTGT TGGTTACTGTTGCTCCCCGGTGGCCCGGCTCGTCCGTGGCGGCCTGTTTCTCCAACAGAT CACGTTAACTTGCCGACCACAGACTCCGCAGTGGGGCTCGGGGCGAATACGGCATGAGGG GCGGTTACATATTATAATTTTCAAAGTATATATTATTGAATAAAAAGTTTTAAAAGAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 366-469, + strand, RNAz p=0.612466 | |
| 366-466, + strand, RNAz p=0.593785 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 366-469, + strand, RNAz p=0.612466 | |
| 366-466, + strand, RNAz p=0.593785 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 1-158, gnl|bosTau2|chr5 (59091125-59090969) | |
| 1-158, gnl|Hg17|chr11 (11330988-11330831) | |
| 1-158, gnl|Mm7|chr1 (156487085-156487242) | |
| 366-469, gnl|bosTau2|chr18 (22964169-22964066) | |
| 366-469, gnl|canFam2|chr2 (61308096-61307971) | |
| 366-469, gnl|danRer3|chr7 (46106847-46106952) | |
| 366-469, gnl|dasNov1|scaffold_141576 (655-779) | |
| 366-469, gnl|echTel1|scaffold_184872 (1294-1395) | |
| 366-469, gnl|fr1|chrUn (174843456-174843579) | |
| 366-469, gnl|galGal2|chr11 (402364-402239) | |
| 366-469, gnl|hg17|chr16 (56758591-56758716) | |
| 366-469, gnl|Hg17|chr16 (56758715-56758612) | |
| 366-469, gnl|loxAfr1|scaffold_39663 (14652-14777) | |
| 366-469, gnl|mm7|chr8 (94049132-94049246) | |
| 366-469, gnl|Mm7|chr8 (94049245-94049142) | |
| 366-469, gnl|monDom2|scaffold_63 (7806930-7807009) | |
| 366-469, gnl|oryCun1|scaffold_159690 (3512-3388) | |
| 366-469, gnl|panTro1|chr18 (50869435-50869560) | |
| 366-469, gnl|rheMac2|chr20 (56516409-56516534) | |
| 366-469, gnl|rn3|chr19 (10048312-10048189) | |
| 366-469, gnl|tetNig1|chrUn_random (95051740-95051634) | |
| 366-469, gnl|xenTro1|scaffold_264 (51391-51498) | |
| 571-719, gnl|bosTau2|chr13 (41860471-41860323) | |
| 571-719, gnl|canFam2|chr24 (23354147-23353982) | |
| 571-719, gnl|canFam2|chr24 (23354125-23353982) | |
| 571-719, gnl|danRer3|chr19 (251342-251182) | |
| 571-719, gnl|danRer3|chrNA (59572480-59572627) | |
| 571-719, gnl|dasNov1|scaffold_25044 (9636-9801) | |
| 571-719, gnl|dasNov1|scaffold_9465 (48089-47943) | |
| 571-719, gnl|echTel1|scaffold_184872 (1049-1192) | |
| 571-719, gnl|echTel1|scaffold_317620 (78834-78990) | |
| 571-719, gnl|fr1|chrUn (174842955-174843108) | |
| 571-719, gnl|fr1|chrUn (174842960-174843107) | |
| 571-719, gnl|galGal2|chr20 (9540546-9540381) | |
| 571-719, gnl|galGal2|chr20 (9540524-9540381) | |
| 571-719, gnl|hg17|chr11 (11330271-11330419) | |
| 571-719, gnl|hg17|chr20 (416055-416220) | |
| 571-719, gnl|Hg17|chr20 (416219-416071) | |
| 571-719, gnl|loxAfr1|scaffold_39663 (13065-13208) | |
| 571-719, gnl|loxAfr1|scaffold_7163 (71-236) | |
| 571-719, gnl|mm7|chr1 (156487804-156487656) | |
| 571-719, gnl|mm7|chr2 (152016421-152016256) | |
| 571-719, gnl|Mm7|chr2 (152016255-152016403) | |
| 571-719, gnl|monDom2|scaffold_38 (2569599-2569764) | |
| 571-719, gnl|monDom2|scaffold_38 (2569621-2569764) | |
| 571-719, gnl|oryCun1|scaffold_197859 (14177-14342) | |
| 571-719, gnl|oryCun1|scaffold_201384 (52300-52157) | |
| 571-719, gnl|panTro1|chr21 (493055-493203) | |
| 571-719, gnl|panTro1|chr21 (493055-493203) | |
| 571-719, gnl|rheMac2|chr10 (33740666-33740831) | |
| 571-719, gnl|rheMac2|chr10 (33740688-33740831) | |
| 571-719, gnl|rn3|chr3 (142512159-142511994) | |
| 571-719, gnl|rn3|chr3 (142512137-142511994) | |
| 571-719, gnl|tetNig1|chr8 (6228053-6227900) | |
| 571-719, gnl|tetNig1|chr8 (6228048-6227901) | |
| 571-719, gnl|xenTro1|scaffold_1206 (127542-127701) | |
| 571-719, gnl|xenTro1|scaffold_1206 (127558-127701) | |
| 813-1259, gnl|bosTau2|chr18 (22955119-22954675) | |
| 813-1259, gnl|Hg17|chr16 (56749759-56749312) | |
| 813-1259, gnl|Mm7|chr8 (94037489-94037041) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-158, gnl|bosTau2|chr5 (59091125-59090969) | |
| 1-158, gnl|Hg17|chr11 (11330988-11330831) | |
| 1-158, gnl|Mm7|chr1 (156487085-156487242) | |
| 366-469, gnl|bosTau2|chr18 (22964169-22964066) | |
| 366-469, gnl|canFam2|chr2 (61308096-61307971) | |
| 366-469, gnl|danRer3|chr7 (46106847-46106952) | |
| 366-469, gnl|dasNov1|scaffold_141576 (655-779) | |
| 366-469, gnl|echTel1|scaffold_184872 (1294-1395) | |
| 366-469, gnl|fr1|chrUn (174843456-174843579) | |
| 366-469, gnl|galGal2|chr11 (402364-402239) | |
| 366-469, gnl|hg17|chr16 (56758591-56758716) | |
| 366-469, gnl|Hg17|chr16 (56758715-56758612) | |
| 366-469, gnl|loxAfr1|scaffold_39663 (14652-14777) | |
| 366-469, gnl|mm7|chr8 (94049132-94049246) | |
| 366-469, gnl|Mm7|chr8 (94049245-94049142) | |
| 366-469, gnl|monDom2|scaffold_63 (7806930-7807009) | |
| 366-469, gnl|oryCun1|scaffold_159690 (3512-3388) | |
| 366-469, gnl|panTro1|chr18 (50869435-50869560) | |
| 366-469, gnl|rheMac2|chr20 (56516409-56516534) | |
| 366-469, gnl|rn3|chr19 (10048312-10048189) | |
| 366-469, gnl|tetNig1|chrUn_random (95051740-95051634) | |
| 366-469, gnl|xenTro1|scaffold_264 (51391-51498) | |
| 571-719, gnl|bosTau2|chr13 (41860471-41860323) | |
| 571-719, gnl|canFam2|chr24 (23354147-23353982) | |
| 571-719, gnl|canFam2|chr24 (23354125-23353982) | |
| 571-719, gnl|danRer3|chr19 (251342-251182) | |
| 571-719, gnl|danRer3|chrNA (59572480-59572627) | |
| 571-719, gnl|dasNov1|scaffold_25044 (9636-9801) | |
| 571-719, gnl|dasNov1|scaffold_9465 (48089-47943) | |
| 571-719, gnl|echTel1|scaffold_184872 (1049-1192) | |
| 571-719, gnl|echTel1|scaffold_317620 (78834-78990) | |
| 571-719, gnl|fr1|chrUn (174842955-174843108) | |
| 571-719, gnl|fr1|chrUn (174842960-174843107) | |
| 571-719, gnl|galGal2|chr20 (9540546-9540381) | |
| 571-719, gnl|galGal2|chr20 (9540524-9540381) | |
| 571-719, gnl|hg17|chr11 (11330271-11330419) | |
| 571-719, gnl|hg17|chr20 (416055-416220) | |
| 571-719, gnl|Hg17|chr20 (416219-416071) | |
| 571-719, gnl|loxAfr1|scaffold_39663 (13065-13208) | |
| 571-719, gnl|loxAfr1|scaffold_7163 (71-236) | |
| 571-719, gnl|mm7|chr1 (156487804-156487656) | |
| 571-719, gnl|mm7|chr2 (152016421-152016256) | |
| 571-719, gnl|Mm7|chr2 (152016255-152016403) | |
| 571-719, gnl|monDom2|scaffold_38 (2569599-2569764) | |
| 571-719, gnl|monDom2|scaffold_38 (2569621-2569764) | |
| 571-719, gnl|oryCun1|scaffold_197859 (14177-14342) | |
| 571-719, gnl|oryCun1|scaffold_201384 (52300-52157) | |
| 571-719, gnl|panTro1|chr21 (493055-493203) | |
| 571-719, gnl|panTro1|chr21 (493055-493203) | |
| 571-719, gnl|rheMac2|chr10 (33740666-33740831) | |
| 571-719, gnl|rheMac2|chr10 (33740688-33740831) | |
| 571-719, gnl|rn3|chr3 (142512159-142511994) | |
| 571-719, gnl|rn3|chr3 (142512137-142511994) | |
| 571-719, gnl|tetNig1|chr8 (6228053-6227900) | |
| 571-719, gnl|tetNig1|chr8 (6228048-6227901) | |
| 571-719, gnl|xenTro1|scaffold_1206 (127542-127701) | |
| 571-719, gnl|xenTro1|scaffold_1206 (127558-127701) | |
| 813-1259, gnl|bosTau2|chr18 (22955119-22954675) | |
| 813-1259, gnl|Hg17|chr16 (56749759-56749312) | |
| 813-1259, gnl|Mm7|chr8 (94037489-94037041) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| pla (0.267344) | |
| nmm (0.132802) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| nmm (0.132802) | |
| ebs (0.118301) | |
| med (0.116252) |