Non-Coding RNA Search

Ss1.1-Pig4-TMW8051J11.3

Sequence:


               
               GCCAGAGTGTCGGATATCAGCGATATGCTCCCCCAGGGACTCCATGTACCAGTCTGTGTG
TTTGATATCAGAAGAGAGGAATGAATGTGTCATTGCCACAGAGGTATAAGGCAGGATCCT
CCCCAGGACATCCCAGCTTTGGCCCAGCAGCTGGACCTTCCTTCTGCATTGTTTACATTG
CATCCTGGATGGGACATTTTTAATATGCAACGTGCTGCTCTCAGGAGGAAGAGGGAATGG
CATGAACTGGACAGACTGTGAACTTGCCAAGAGATGCAGTACCCTTCCACATCTTTGGGT
GTCTGTCTGGCATCAGATTGGCAGCCGCGCCAGCCAGGGAAACAGAGGAGAGGAGAGGTG
CCGCTTGGACCTGCACTGCCAGCAGTGGCCTTCAGAGGGCTCCTTTGGGGCTCTGGCCTG
TTTTCCAGAGGGAGTGGCAGTGGCCCCGTGGGGCCTGGAGCTGCTGTGGCCTCCACTGGC
ATCTGTGTTTCCAAAAGTGCCTTGGCCCAGGCTCCATGGCAACAGCTGGGTCCAAATCAG
AGAGGAGAGAGGAGGCCAGTAAGGGCAGGGCCGTCTATGGGCCAGGAAACCATCTGGTAC
AGCTCTTGGCAGGAGTGTCCCTGCAGGTGAGGTGAGCGCCCCCCGGCGGGAGAAGCACTT
TCTGCCCTGTGCCTCCAACCACTGCACGTGGGCCTTGCTCTTAACACCACCCTGGCCTCT
CCTTGGCCCAGACCCTCTGGGCAAGGGGACTGGTAAGCCTTACCTGGCTTCCACAGCCAC
TGGCCCTGTGAGCAGACAGGTGGAGGGACTGCCCCTCCTGCCAGCCAGGGGCACCCAGCC
TAACTGGGGAGCTCAGGGCAGTGAGGATGGAAATTCTGGTGAGGGAGAAATTGGGTGCTA
TCGTCACCTAGGCCCTTTCCTCCCTCAAGCCCATTCCTATGGCCTCGAGCCTGGGCTCTG
CCCACACCCACTACTGCCCCCAGACCACTCTTGAAGCTGATCTTCAGAAATCAATAATAT
GAGTTTTTATTTTGTTTGTTTTTTTTGGTAGTTTATTTTGGAGTCTACTATTTCGATAAT
TTAAGAATCAGAAGCACTGACCTTTCTACATTTTATAACATTATTTTGTATATAATGTGT
ATTTATAATATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGAGTGTCGGATATCAGCGATATGCTCCCCCAGGGACTCCATGTACCAGTCTGTGTG
TTTGATATCAGAAGAGAGGAATGAATGTGTCATTGCCACAGAGGTATAAGGCAGGATCCT
CCCCAGGACATCCCAGCTTTGGCCCAGCAGCTGGACCTTCCTTCTGCATTGTTTACATTG
CATCCTGGATGGGACATTTTTAATATGCAACGTGCTGCTCTCAGGAGGAAGAGGGAATGG
CATGAACTGGACAGACTGTGAACTTGCCAAGAGATGCAGTACCCTTCCACATCTTTGGGT
GTCTGTCTGGCATCAGATTGGCAGCCGCGCCAGCCAGGGAAACAGAGGAGAGGAGAGGTG
CCGCTTGGACCTGCACTGCCAGCAGTGGCCTTCAGAGGGCTCCTTTGGGGCTCTGGCCTG
TTTTCCAGAGGGAGTGGCAGTGGCCCCGTGGGGCCTGGAGCTGCTGTGGCCTCCACTGGC
ATCTGTGTTTCCAAAAGTGCCTTGGCCCAGGCTCCATGGCAACAGCTGGGTCCAAATCAG
AGAGGAGAGAGGAGGCCAGTAAGGGCAGGGCCGTCTATGGGCCAGGAAACCATCTGGTAC
AGCTCTTGGCAGGAGTGTCCCTGCAGGTGAGGTGAGCGCCCCCCGGCGGGAGAAGCACTT
TCTGCCCTGTGCCTCCAACCACTGCACGTGGGCCTTGCTCTTAACACCACCCTGGCCTCT
CCTTGGCCCAGACCCTCTGGGCAAGGGGACTGGTAAGCCTTACCTGGCTTCCACAGCCAC
TGGCCCTGTGAGCAGACAGGTGGAGGGACTGCCCCTCCTGCCAGCCAGGGGCACCCAGCC
TAACTGGGGAGCTCAGGGCAGTGAGGATGGAAATTCTGGTGAGGGAGAAATTGGGTGCTA
TCGTCACCTAGGCCCTTTCCTCCCTCAAGCCCATTCCTATGGCCTCGAGCCTGGGCTCTG
CCCACACCCACTACTGCCCCCAGACCACTCTTGAAGCTGATCTTCAGAAATCAATAATAT
GAGTTTTTATTTTGTTTGTTTTTTTTGGTAGTTTATTTTGGAGTCTACTATTTCGATAAT
TTAAGAATCAGAAGCACTGACCTTTCTACATTTTATAACATTATTTTGTATATAATGTGT
ATTTATAATATG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               94-212, - strand, RNAz p=0.879589
               

               
               393-509, - strand, RNAz p=0.753478
               

               
               667-1042, - strand, RNAz p=0.999746

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               94-212, - strand, RNAz p=0.879589
               

               
               393-509, - strand, RNAz p=0.753478
               

               
               667-1042, - strand, RNAz p=0.999746

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               912-1004, - strand, RNAmicro p=0.999597
               

               
               391-492, + strand, RNAmicro p=0.995635
               

               
               892-1005, + strand, RNAmicro p=0.977669

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               912-1004, - strand, RNAmicro p=0.999597
               

               
               391-492, + strand, RNAmicro p=0.995635
               

               
               892-1005, + strand, RNAmicro p=0.977669

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               94-1152, gnl|bosTau2|chr10 (25748863-25749926)
               

               
               94-1152, gnl|Hg17|chr15 (39017510-39018545)
               

               
               94-1152, gnl|Mm7|chr2 (119075467-119076490)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               94-1152, gnl|bosTau2|chr10 (25748863-25749926)
               

               
               94-1152, gnl|Hg17|chr15 (39017510-39018545)
               

               
               94-1152, gnl|Mm7|chr2 (119075467-119076490)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fty (0.17584)
               

               
               eye (0.170503)
               

               
               pla (0.133672)
               

               
               ute (0.132784)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               pla (0.133672)
               

               
               ute (0.132784)

	94-212, - strand, RNAz p=0.879589
	393-509, - strand, RNAz p=0.753478
	667-1042, - strand, RNAz p=0.999746

	912-1004, - strand, RNAmicro p=0.999597
	391-492, + strand, RNAmicro p=0.995635
	892-1005, + strand, RNAmicro p=0.977669

	94-1152, gnl\|bosTau2\|chr10 (25748863-25749926)
	94-1152, gnl\|Hg17\|chr15 (39017510-39018545)
	94-1152, gnl\|Mm7\|chr2 (119075467-119076490)