Ss1.1-Pig4-TMW8051J12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAGGTGAACACGATCCGGGCCCACGACAACCCGGTGTGCACGCTGGTCTCCTCGCACA ACCTGCTCTTCAGCGGCTCCCTGAAAGCCATCAAGGTCTGGGACATCGTGGGCACCGAGC TGAAGCTGAAGAAGGAGCTCACCGGCCTCAACCACTGGGTGCGGGCCCTGGTGGCCGCCC AGAGCTACCTGTACAGCGGCTCGTACCAGACAATCAAGATCTGGGACATCCGGACCCTCG ACTGCATCCACGTCCTGCAGACGTCTGGTGGCAGTGTCTACTCGATCGCCGTGACGAACC ACCACATCGTCTGTGGCACCTACGAGAACCTCATCCACGTATGGGACATCGAGTCCAAGG AGCAAGTGCGAACCCTGACGGGCCACGTGGGCACCGTGTACGCCCTGGCGGTCATCTCCA CGCCAGACCAGACCAAAGTCTTCAGTGCGTCCTACGACCGCTCTCTCAGGGTGTGGAGCA TGGATAACATGATCTGCACGCAGACCCTGCTGCGCCACCAGGGCAGCGTGACAGCCCTGG CTGTGTCCCGGGGCCGGCTCTTCTCGGGAGCCGTGGACAGCACTGTGAAGGTTTGGACTT GCTAACAGAACCTGGGCCAGGTCTTGGCTTGCTCTGGGCCCAACCCAGACCAGTCCCAGT CCGGCTGGCCCCATGGTTGGTCTGGGGGTCTCTGCCCACCCTGTGGGGACAGGCAGGCAG ACTCAGCCAGGCAGGCAGTGAGTGCCCTCCCTGCCCGGCACCCAGCGAGTCCCCCTCTGC TTGGCCCTGTCATCGTCACTGCCAGGACAGTGCCCAGCCCCTCTCTGGGTGCCAGGTACG ACGCTCAGCAGCCCCCCACTCTGTCCTGACTCCAGGTGGACTGTGGGCCTTTTTACTCAC CTTTTCTACTGTTTTTAGACTGTATATAGATTTGATTACTTCCTGATTGAAATAAAAGCT GCACAGACTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAGGTGAACACGATCCGGGCCCACGACAACCCGGTGTGCACGCTGGTCTCCTCGCACA ACCTGCTCTTCAGCGGCTCCCTGAAAGCCATCAAGGTCTGGGACATCGTGGGCACCGAGC TGAAGCTGAAGAAGGAGCTCACCGGCCTCAACCACTGGGTGCGGGCCCTGGTGGCCGCCC AGAGCTACCTGTACAGCGGCTCGTACCAGACAATCAAGATCTGGGACATCCGGACCCTCG ACTGCATCCACGTCCTGCAGACGTCTGGTGGCAGTGTCTACTCGATCGCCGTGACGAACC ACCACATCGTCTGTGGCACCTACGAGAACCTCATCCACGTATGGGACATCGAGTCCAAGG AGCAAGTGCGAACCCTGACGGGCCACGTGGGCACCGTGTACGCCCTGGCGGTCATCTCCA CGCCAGACCAGACCAAAGTCTTCAGTGCGTCCTACGACCGCTCTCTCAGGGTGTGGAGCA TGGATAACATGATCTGCACGCAGACCCTGCTGCGCCACCAGGGCAGCGTGACAGCCCTGG CTGTGTCCCGGGGCCGGCTCTTCTCGGGAGCCGTGGACAGCACTGTGAAGGTTTGGACTT GCTAACAGAACCTGGGCCAGGTCTTGGCTTGCTCTGGGCCCAACCCAGACCAGTCCCAGT CCGGCTGGCCCCATGGTTGGTCTGGGGGTCTCTGCCCACCCTGTGGGGACAGGCAGGCAG ACTCAGCCAGGCAGGCAGTGAGTGCCCTCCCTGCCCGGCACCCAGCGAGTCCCCCTCTGC TTGGCCCTGTCATCGTCACTGCCAGGACAGTGCCCAGCCCCTCTCTGGGTGCCAGGTACG ACGCTCAGCAGCCCCCCACTCTGTCCTGACTCCAGGTGGACTGTGGGCCTTTTTACTCAC CTTTTCTACTGTTTTTAGACTGTATATAGATTTGATTACTTCCTGATTGAAATAAAAGCT GCACAGACTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 94-943, - strand, RNAz p=0.999902 | |
| 624-902, - strand, RNAz p=0.978517 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 94-943, - strand, RNAz p=0.999902 | |
| 624-902, - strand, RNAz p=0.978517 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 94-237, gnl|bosTau2|chr25 (5081185-5081044) | |
| 94-237, gnl|canFam2|chr6 (41831258-41831113) | |
| 94-237, gnl|danRer3|chr3 (29614479-29614346) | |
| 94-237, gnl|fr1|chrUn (236620848-236620988) | |
| 94-237, gnl|galGal2|chr14 (8483684-8483825) | |
| 94-237, gnl|hg17|chr16 (2165494-2165638) | |
| 94-237, gnl|Hg17|chr16 (2165500-2165678) | |
| 94-237, gnl|loxAfr1|scaffold_5317 (85670-85806) | |
| 94-237, gnl|mm7|chr17 (22691206-22691062) | |
| 94-237, gnl|Mm7|chr17 (22691198-22691051) | |
| 94-237, gnl|monDom2|scaffold_5 (120918498-120918359) | |
| 94-237, gnl|oryCun1|scaffold_79849 (841-984) | |
| 94-237, gnl|panTro1|chr18 (1976658-1976802) | |
| 94-237, gnl|rheMac2|chr20 (2169441-2169585) | |
| 94-237, gnl|rn3|chr10 (13762223-13762079) | |
| 94-237, gnl|tetNig1|chrUn_random (37454629-37454762) | |
| 94-237, gnl|xenTro1|scaffold_12 (1327194-1327324) | |
| 335-472, gnl|bosTau2|chr25 (5080721-5080584) | |
| 335-472, gnl|canFam2|chr6 (41830732-41830588) | |
| 335-472, gnl|danRer3|chr3 (29611422-29611270) | |
| 335-472, gnl|echTel1|scaffold_324111 (2575-2720) | |
| 335-472, gnl|fr1|chrUn (236623223-236623368) | |
| 335-472, gnl|galGal2|chr14 (8484847-8484999) | |
| 335-472, gnl|hg17|chr16 (2166043-2166188) | |
| 335-472, gnl|Hg17|chr16 (2166047-2166184) | |
| 335-472, gnl|loxAfr1|scaffold_5317 (86258-86403) | |
| 335-472, gnl|mm7|chr17 (22690702-22690557) | |
| 335-472, gnl|Mm7|chr17 (22690696-22690559) | |
| 335-472, gnl|monDom2|scaffold_5 (120917221-120917076) | |
| 335-472, gnl|oryCun1|scaffold_177155 (34867-34726) | |
| 335-472, gnl|panTro1|chr18 (1977207-1977352) | |
| 335-472, gnl|rheMac2|chr20 (2169973-2170118) | |
| 335-472, gnl|rn3|chr10 (13761720-13761575) | |
| 335-472, gnl|tetNig1|chrUn_random (37456217-37456362) | |
| 335-472, gnl|xenTro1|scaffold_12 (1328058-1328202) | |
| 578-990, gnl|bosTau2|chr9 (6290791-6290367) | |
| 578-990, gnl|Hg17|chr16 (2166560-2166940) | |
| 586-972, gnl|bosTau2|chr25 (5080221-5079856) | |
| 586-972, gnl|canFam2|chr6 (41830256-41829959) | |
| 586-972, gnl|echTel1|scaffold_324111 (2979-3228) | |
| 586-972, gnl|galGal2|chr14 (8485397-8485734) | |
| 586-972, gnl|hg17|chr16 (2166518-2166819) | |
| 586-972, gnl|Hg17|chr16 (2166557-2166940) | |
| 586-972, gnl|loxAfr1|scaffold_5317 (86653-86910) | |
| 586-972, gnl|mm7|chr17 (22690231-22689952) | |
| 586-972, gnl|Mm7|chr17 (22690188-22689675) | |
| 586-972, gnl|monDom2|scaffold_5 (120916112-120915838) | |
| 586-972, gnl|panTro1|chr18 (1977682-1977972) | |
| 586-972, gnl|rheMac2|chr20 (2170448-2170740) | |
| 586-972, gnl|rn3|chr10 (13761253-13760962) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 94-237, gnl|bosTau2|chr25 (5081185-5081044) | |
| 94-237, gnl|canFam2|chr6 (41831258-41831113) | |
| 94-237, gnl|danRer3|chr3 (29614479-29614346) | |
| 94-237, gnl|fr1|chrUn (236620848-236620988) | |
| 94-237, gnl|galGal2|chr14 (8483684-8483825) | |
| 94-237, gnl|hg17|chr16 (2165494-2165638) | |
| 94-237, gnl|Hg17|chr16 (2165500-2165678) | |
| 94-237, gnl|loxAfr1|scaffold_5317 (85670-85806) | |
| 94-237, gnl|mm7|chr17 (22691206-22691062) | |
| 94-237, gnl|Mm7|chr17 (22691198-22691051) | |
| 94-237, gnl|monDom2|scaffold_5 (120918498-120918359) | |
| 94-237, gnl|oryCun1|scaffold_79849 (841-984) | |
| 94-237, gnl|panTro1|chr18 (1976658-1976802) | |
| 94-237, gnl|rheMac2|chr20 (2169441-2169585) | |
| 94-237, gnl|rn3|chr10 (13762223-13762079) | |
| 94-237, gnl|tetNig1|chrUn_random (37454629-37454762) | |
| 94-237, gnl|xenTro1|scaffold_12 (1327194-1327324) | |
| 335-472, gnl|bosTau2|chr25 (5080721-5080584) | |
| 335-472, gnl|canFam2|chr6 (41830732-41830588) | |
| 335-472, gnl|danRer3|chr3 (29611422-29611270) | |
| 335-472, gnl|echTel1|scaffold_324111 (2575-2720) | |
| 335-472, gnl|fr1|chrUn (236623223-236623368) | |
| 335-472, gnl|galGal2|chr14 (8484847-8484999) | |
| 335-472, gnl|hg17|chr16 (2166043-2166188) | |
| 335-472, gnl|Hg17|chr16 (2166047-2166184) | |
| 335-472, gnl|loxAfr1|scaffold_5317 (86258-86403) | |
| 335-472, gnl|mm7|chr17 (22690702-22690557) | |
| 335-472, gnl|Mm7|chr17 (22690696-22690559) | |
| 335-472, gnl|monDom2|scaffold_5 (120917221-120917076) | |
| 335-472, gnl|oryCun1|scaffold_177155 (34867-34726) | |
| 335-472, gnl|panTro1|chr18 (1977207-1977352) | |
| 335-472, gnl|rheMac2|chr20 (2169973-2170118) | |
| 335-472, gnl|rn3|chr10 (13761720-13761575) | |
| 335-472, gnl|tetNig1|chrUn_random (37456217-37456362) | |
| 335-472, gnl|xenTro1|scaffold_12 (1328058-1328202) | |
| 578-990, gnl|bosTau2|chr9 (6290791-6290367) | |
| 578-990, gnl|Hg17|chr16 (2166560-2166940) | |
| 586-972, gnl|bosTau2|chr25 (5080221-5079856) | |
| 586-972, gnl|canFam2|chr6 (41830256-41829959) | |
| 586-972, gnl|echTel1|scaffold_324111 (2979-3228) | |
| 586-972, gnl|galGal2|chr14 (8485397-8485734) | |
| 586-972, gnl|hg17|chr16 (2166518-2166819) | |
| 586-972, gnl|Hg17|chr16 (2166557-2166940) | |
| 586-972, gnl|loxAfr1|scaffold_5317 (86653-86910) | |
| 586-972, gnl|mm7|chr17 (22690231-22689952) | |
| 586-972, gnl|Mm7|chr17 (22690188-22689675) | |
| 586-972, gnl|monDom2|scaffold_5 (120916112-120915838) | |
| 586-972, gnl|panTro1|chr18 (1977682-1977972) | |
| 586-972, gnl|rheMac2|chr20 (2170448-2170740) | |
| 586-972, gnl|rn3|chr10 (13761253-13760962) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| fty (0.527519) | |
| ece (0.229305) | |
| col (0.195008) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| pla (0.133672) | |
| ute (0.132784) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.527519) | |
| ece (0.229305) | |
| col (0.195008) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| pla (0.133672) | |
| ute (0.132784) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |