Non-Coding RNA Search

Ss1.1-Pig4-TMW8051K02.5

Sequence:


               
               TTTACCTTTTCCTTATGATGGAGTTGGTTCTGATATTCATTTTGTTTTATCAAATGGCTG
CTAAGAGCACAGGAGTGACTCCGCTGAAGAACTTGGTTAAGTGTTTTGTGCAAACTGGAC
ATATGCAGCATACTACTACTTCAGATTTAGTTCTTTATGTAAATGTCTGATTTCTGCTTA
CTTATTTTAAACTTTCTAATCCAATTCCATTTTAGAATTGATAGGTGAAATTTTGTTCAT
GCTTTGGTAGGAAATATGTCATTGAAATGATTCTTTTTATATGCAGCCTCTTACTTGTGT
TTTCCATATATCTAAAGTATGCTAATTATGTCTTTGGTTTTGTCTGATATGGAAAAGAAA
AGCTGTGTCTCTATTTTATCAAAATATTTGAACAATTTTTTCAGCATATCATCACTAATC
ATTGGTAACCACTAAAGAAGAGTGATTTGCTTACCTAGTAGTTATAATTGTAGATAGGCC
TTCCGACATTTTTTTCCCTAAAATATTTTAACAACAGTGAAGGTGAAACAGCACAATGTC
CCATTCCAAATTATTTTTTAAACAGTTGTAAATAATTGGCTTTTTAAAGAAAAAAAGCAG
AAGCATTTAATATATTAATAGGCTTATTGCTATGCAGGAATGGAAGGAGGCATTACAAAA
GATTTTAAGCTTGTGACATATTTATTGCTTATGTTTTCCAACGACATCACTTAAATTAGA
AGTAAACAGCTATGATTTTCCTGGCTTCATATAGGAGGCAAATTTAGGGAAAGTTGAAAA
GATTTGTGTTTGGCTTTTTTTTTTTTTTCTTTTTTCCTTATTTTCTTAAGAGTATAAGGT
TTACACAATCATTCTCATAATGTGACGCAAGCCAGCAAGGCCAAAAATGCTAGAGAAAAT
AATGGGATCTCTTCCTTGTAAACTTGTACAGTACGTGGTGACTTTTTTCAAAATACAGCT
TTTTGTACATGATTTAGAGACAAATTTTGTACATGAAACCCCAGATAGACTATAAATAAT
TCTAAACAAACAAGTAGGTAGATATGTATGTAATTGCTTTTAAATCATTAAAATGCCTTT
GTTTTTGGACTGTGCAAAGGTTGGAAGTGGGTTTGCATTTCTAAAATGGTGAGTTTTATT
CTGCAAGAGTTCTTAGTAACTTCTTGAGTGTGGTAGACTTTGGAACATGTACATTTTTTG
CTTGTAATGTTATCCTGTGGTAGGGTTTTGGCAGGTACACACTGCCCTATTTTATTTTGA
GTCTAAGTTAAATGTTTTCTGAAAAGAGATATGTGCACTGAACTCTTTCCACTGCAAATC
AAGATGTGGTAAAACAAAAGGATCAAGACAAATGAGATCTAATACTACTGTCAGTTTAAT
GTCCACTGTGTTTTATACAGTATCTTTTTGTTCACTTTGGAAATTTTTACTAAAAATGGC
AAAAAATAAAGTATTGTGCAAAGATGTAAGGTTTTTTGAAACTTGAAATGCATTAATAAA
TAGACTTGATGAAATCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTACCTTTTCCTTATGATGGAGTTGGTTCTGATATTCATTTTGTTTTATCAAATGGCTG
CTAAGAGCACAGGAGTGACTCCGCTGAAGAACTTGGTTAAGTGTTTTGTGCAAACTGGAC
ATATGCAGCATACTACTACTTCAGATTTAGTTCTTTATGTAAATGTCTGATTTCTGCTTA
CTTATTTTAAACTTTCTAATCCAATTCCATTTTAGAATTGATAGGTGAAATTTTGTTCAT
GCTTTGGTAGGAAATATGTCATTGAAATGATTCTTTTTATATGCAGCCTCTTACTTGTGT
TTTCCATATATCTAAAGTATGCTAATTATGTCTTTGGTTTTGTCTGATATGGAAAAGAAA
AGCTGTGTCTCTATTTTATCAAAATATTTGAACAATTTTTTCAGCATATCATCACTAATC
ATTGGTAACCACTAAAGAAGAGTGATTTGCTTACCTAGTAGTTATAATTGTAGATAGGCC
TTCCGACATTTTTTTCCCTAAAATATTTTAACAACAGTGAAGGTGAAACAGCACAATGTC
CCATTCCAAATTATTTTTTAAACAGTTGTAAATAATTGGCTTTTTAAAGAAAAAAAGCAG
AAGCATTTAATATATTAATAGGCTTATTGCTATGCAGGAATGGAAGGAGGCATTACAAAA
GATTTTAAGCTTGTGACATATTTATTGCTTATGTTTTCCAACGACATCACTTAAATTAGA
AGTAAACAGCTATGATTTTCCTGGCTTCATATAGGAGGCAAATTTAGGGAAAGTTGAAAA
GATTTGTGTTTGGCTTTTTTTTTTTTTTCTTTTTTCCTTATTTTCTTAAGAGTATAAGGT
TTACACAATCATTCTCATAATGTGACGCAAGCCAGCAAGGCCAAAAATGCTAGAGAAAAT
AATGGGATCTCTTCCTTGTAAACTTGTACAGTACGTGGTGACTTTTTTCAAAATACAGCT
TTTTGTACATGATTTAGAGACAAATTTTGTACATGAAACCCCAGATAGACTATAAATAAT
TCTAAACAAACAAGTAGGTAGATATGTATGTAATTGCTTTTAAATCATTAAAATGCCTTT
GTTTTTGGACTGTGCAAAGGTTGGAAGTGGGTTTGCATTTCTAAAATGGTGAGTTTTATT
CTGCAAGAGTTCTTAGTAACTTCTTGAGTGTGGTAGACTTTGGAACATGTACATTTTTTG
CTTGTAATGTTATCCTGTGGTAGGGTTTTGGCAGGTACACACTGCCCTATTTTATTTTGA
GTCTAAGTTAAATGTTTTCTGAAAAGAGATATGTGCACTGAACTCTTTCCACTGCAAATC
AAGATGTGGTAAAACAAAAGGATCAAGACAAATGAGATCTAATACTACTGTCAGTTTAAT
GTCCACTGTGTTTTATACAGTATCTTTTTGTTCACTTTGGAAATTTTTACTAAAAATGGC
AAAAAATAAAGTATTGTGCAAAGATGTAAGGTTTTTTGAAACTTGAAATGCATTAATAAA
TAGACTTGATGAAATCAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1518, gnl|bosTau2|chr10 (33753526-33752043)
               

               
               1-1518, gnl|Hg17|chr15 (56676374-56674885)
               

               
               1-1518, gnl|Mm7|chr9 (70810999-70812472)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1518, gnl|bosTau2|chr10 (33753526-33752043)
               

               
               1-1518, gnl|Hg17|chr15 (56676374-56674885)
               

               
               1-1518, gnl|Mm7|chr9 (70810999-70812472)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

Help | Less info


               
               liv (0.877706)
               

               
               clu (0.837521)
               

               
               fat (0.442282)
               

               
               kid (0.389206)
               

               
               fco (0.314416)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.877706)
               

               
               clu (0.837521)
               

               
               fat (0.442282)
               

               
               kid (0.389206)
               

               
               fco (0.314416)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)

	1-1518, gnl\|bosTau2\|chr10 (33753526-33752043)
	1-1518, gnl\|Hg17\|chr15 (56676374-56674885)
	1-1518, gnl\|Mm7\|chr9 (70810999-70812472)

	liv (0.877706)
	clu (0.837521)
	fat (0.442282)
	kid (0.389206)
	fco (0.314416)
	lin (0.291206)
	fce (0.271592)
	tra (0.246184)
	hea (0.204499)
	nlu (0.191681)
	ill (0.175593)
	sin (0.174948)
	rec (0.17307)
	fhi (0.169578)
	csp (0.161186)
	bfe (0.149858)
	spl (0.143184)
	lnt (0.142308)
	ova (0.129132)
	ret (0.128733)
	bla (0.124347)