Ss1.1-Pig4-TMW8051K05.3
|
AAAAAAAAAAAAAAAAAAAAAAACACCACAAAACACTCCACTCCTACCCACCCCTCCCCA
CCCCAGTCCAATGAGTGGATACCACTTAAGATAGGAGTCTTCACAGGGGAGAAGACAATA
CCAAGAGCTTGTATTGTTACCTTAATCACCTTACTAGCAATGTGTGGCTTTAAGAATTTT
AAACATTTTCAGTCTTAGTTTGCAAATTGGCATTTCAGACTTACCAAGATAAAAACATCC
ACCCATGTCTGTGTATATGTGCTCAGTGTGGCTTTAGAGCCTGTCCCTGGGGCTTAACAT
TACTGGCCCTGACAGGATGGGGGAAGCCCCTGGAATTAAGTGAGCATCTGGCCCAGGTCA
CAGTGGCCTGACCTCAGATCAGCTTAAGGCTTTAGGTCCTCTCAGAATTTGTATTTCCAA
CTTCTCCCCTTCGGGGTGAGAGAGGAAGTGGGAAGGGTTAGGTACAGCCACTCTAGGCTC
AGCAGGACACTAGATCATTCCAGAGTTTTCAGTCGCTTCCAGGAAGTGATACTACAGTCA
GTGCTCAGCTAAAATCCCCAGGCCCAGGAATAACTCCACTTAAACAGTTGTGACCATCCA
TCGTCCTCCACTAGAGGGGCTGAGCTTGACTGCCTAGAGCCAGGCAAGCACAGTAGTGTG
TGTTTTCTTCAGCATTATTATGCAAAACCCACTGGTTAGGGTGATTTATTTTAGGATAGG
AAATGAAATTGCCTCTCAGTGACAGGAATGACCCAAGCCTGCTTCCTATTTCGATTTTTT
TTTTTTTTAAACTGATGGATGGTGCAGCATGTCTACATGGTTGTTTGTTGCTAAACTTTA
TATAATGTGTGGTTTTGATTCAGCTTGAAAAATAATCTCACTACATGTAGCAGTACATTT
TATGTACATTATATGTATTGTTAGTATTTCTGCTTTGAACCCTTGATATTGCAATGGAAT
TCCAACTTTATTAAATGTATTTGATATGCTAGTTATTGTGTGCGATTTAAACTTTTTTTG
CTTTCTCCCTTTTCCGGTTGTGCGCTTCCTTTTACAACAAGCCTCTAGAAACAGTTTCTG
AGAATTACTGAGCTTTGTTTGTAATGCAGATGTACTTAGGGAGTATGTAAAATAATCATT
TTAACAAAGGAAATAGATATTTAAAATTTAATACTAACTATGGGAAAAGGGTCCATTGTG
TAAAACATAGTTTATCTTTGGATTCAATGTTTGTCTTTAGTTTTACAAAGTAGCTTGTAT
TTTCAGTATTTTCTACATAATATGGTAAAATGTAGAGCAATTGCAATGCATCAATAAAAT
GGATAAATTTTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAAAAAAAAAAAAAAAAAAAAAACACCACAAAACACTCCACTCCTACCCACCCCTCCCCA
CCCCAGTCCAATGAGTGGATACCACTTAAGATAGGAGTCTTCACAGGGGAGAAGACAATA
CCAAGAGCTTGTATTGTTACCTTAATCACCTTACTAGCAATGTGTGGCTTTAAGAATTTT
AAACATTTTCAGTCTTAGTTTGCAAATTGGCATTTCAGACTTACCAAGATAAAAACATCC
ACCCATGTCTGTGTATATGTGCTCAGTGTGGCTTTAGAGCCTGTCCCTGGGGCTTAACAT
TACTGGCCCTGACAGGATGGGGGAAGCCCCTGGAATTAAGTGAGCATCTGGCCCAGGTCA
CAGTGGCCTGACCTCAGATCAGCTTAAGGCTTTAGGTCCTCTCAGAATTTGTATTTCCAA
CTTCTCCCCTTCGGGGTGAGAGAGGAAGTGGGAAGGGTTAGGTACAGCCACTCTAGGCTC
AGCAGGACACTAGATCATTCCAGAGTTTTCAGTCGCTTCCAGGAAGTGATACTACAGTCA
GTGCTCAGCTAAAATCCCCAGGCCCAGGAATAACTCCACTTAAACAGTTGTGACCATCCA
TCGTCCTCCACTAGAGGGGCTGAGCTTGACTGCCTAGAGCCAGGCAAGCACAGTAGTGTG
TGTTTTCTTCAGCATTATTATGCAAAACCCACTGGTTAGGGTGATTTATTTTAGGATAGG
AAATGAAATTGCCTCTCAGTGACAGGAATGACCCAAGCCTGCTTCCTATTTCGATTTTTT
TTTTTTTTAAACTGATGGATGGTGCAGCATGTCTACATGGTTGTTTGTTGCTAAACTTTA
TATAATGTGTGGTTTTGATTCAGCTTGAAAAATAATCTCACTACATGTAGCAGTACATTT
TATGTACATTATATGTATTGTTAGTATTTCTGCTTTGAACCCTTGATATTGCAATGGAAT
TCCAACTTTATTAAATGTATTTGATATGCTAGTTATTGTGTGCGATTTAAACTTTTTTTG
CTTTCTCCCTTTTCCGGTTGTGCGCTTCCTTTTACAACAAGCCTCTAGAAACAGTTTCTG
AGAATTACTGAGCTTTGTTTGTAATGCAGATGTACTTAGGGAGTATGTAAAATAATCATT
TTAACAAAGGAAATAGATATTTAAAATTTAATACTAACTATGGGAAAAGGGTCCATTGTG
TAAAACATAGTTTATCTTTGGATTCAATGTTTGTCTTTAGTTTTACAAAGTAGCTTGTAT
TTTCAGTATTTTCTACATAATATGGTAAAATGTAGAGCAATTGCAATGCATCAATAAAAT
GGATAAATTTTC
|
|
1039-1330, gnl|bosTau2|chr14 (17408714-17408992) |
|
1039-1330, gnl|canFam2|chr29 (16283562-16283988) |
|
1039-1330, gnl|echTel1|scaffold_190367 (6341-6760) |
|
1039-1330, gnl|hg17|chr8 (64288911-64289351) |
|
1039-1330, gnl|loxAfr1|scaffold_52759 (9516-9061) |
|
1039-1330, gnl|mm7|chr3 (15928440-15928770) |
|
1039-1330, gnl|Mm7|chr3 (103534094-103533804) |
|
1039-1330, gnl|panTro1|chr7 (66287785-66288223) |
|
1039-1330, gnl|rheMac2|chr8 (65751566-65752009) |
|
1039-1330, gnl|rn3|chr2 (100832615-100832951) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1039-1330, gnl|bosTau2|chr14 (17408714-17408992) |
|
1039-1330, gnl|canFam2|chr29 (16283562-16283988) |
|
1039-1330, gnl|echTel1|scaffold_190367 (6341-6760) |
|
1039-1330, gnl|hg17|chr8 (64288911-64289351) |
|
1039-1330, gnl|loxAfr1|scaffold_52759 (9516-9061) |
|
1039-1330, gnl|mm7|chr3 (15928440-15928770) |
|
1039-1330, gnl|Mm7|chr3 (103534094-103533804) |
|
1039-1330, gnl|panTro1|chr7 (66287785-66288223) |
|
1039-1330, gnl|rheMac2|chr8 (65751566-65752009) |
|
1039-1330, gnl|rn3|chr2 (100832615-100832951) |
|
tra (0.492368) |
|
aor (0.390549) |
|
kid (0.389206) |
|
spl (0.286369) |
|
ova (0.258264) |
|
cbe (0.239234) |
|
nbm (0.198649) |
|
cmu (0.186393) |
|
mgm (0.180343) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
mga (0.160205) |
|
fco (0.157208) |
|
fat (0.147427) |
|
ski (0.146735) |
|
lin (0.145603) |
|
lnt (0.142308) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
cbl (0.114797) |
|
jca (0.11396) |
|
spc (0.113366) |
|
tra (0.492368) |
|
aor (0.390549) |
|
kid (0.389206) |
|
spl (0.286369) |
|
ova (0.258264) |
|
cbe (0.239234) |
|
nbm (0.198649) |
|
cmu (0.186393) |
|
mgm (0.180343) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
mga (0.160205) |
|
fco (0.157208) |
|
fat (0.147427) |
|
ski (0.146735) |
|
lin (0.145603) |
|
lnt (0.142308) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
cbl (0.114797) |
|
jca (0.11396) |
|
spc (0.113366) |
