Non-Coding RNA Search

Ss1.1-Pig4-TMW8051K13.3

Sequence:


               
               GAAAGTGAACAAATTCAGTATCATCTAAACTTCCTCAAGAAAAGACTGCTGCAACTGTGT
GAAACCCTGAAAGTCCCTCCCAAAAAGCTACAAGATTTAACTAATGTGTCAGCTCTGCTG
AAGATGGAAAGGGCACAGCACAGAGCTAATGAAGAGGGTCTGGCATTATTGCAGGAAGAA
ACAGAGAAAATAGTAGAGACTGTAGAGTCAATGACTGGGAATATTCACAGCCTAAAGAAC
CAGGTTCATGTTCTGACAAGTGAGGTGGAAGAAGAGGAAAAGAAAATAAAACAGATGCTT
CAGATAGATGGTGGAGTACTTTCTCTTCCAGAACTTCCTCAGAAGAGTCTCAAAGCACCT
GTACTTCAGAAAGAAATTTTGACATCGATTCCAAACCACAACACTCTTCTGAAGGACTTG
GAAGTTCTACATAATTCATCCCAGATGAAGAACACGCTGACTTTCATCAAAGAAGTCCAT
AAAAGACTGGATGCCTCTTAAAGAGTTTTTTTTTTTTAGTTGTTTCATGTTAATTTAATG
TTCAGTGAAACAAGTTGGGTTCAATGCTCATTGCAGTGAGGGAGACCACATATCATGAAG
AACCCCAGGCAGGTCAGCAAGAGACAAAAGCAATATCCTGTCAGCAAATAATGGTCAAGG
AGGACATTAGTGGATTTTACGGGAAGGAGAGTTTTTAAGAAAGGAAACCTGTAGCACAGC
ATTTAATTATTTGTTTGTTTTGGCCACACCTGCCTTTTGGGGGAGGGGCCAGGAATCAAA
CCCGGGCCCCCGCAGAGACAATGCCAGATTTTTAACCTGGTGAGCCCCCAGTCAGCTTTT
GGTAGGGCAGCAGTTAAAAAAAAAGTATTTGTTTTGGAATATTTGGTACACCCCAGCCAA
GCAAATGAAATAAGATTTTACAAAATGTTTTAAAAACCCTTCACTTGGAAAATCACTGTT
TTGTGTTTTTAGAGTGAATAATAGAACCCCAGCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGTGAACAAATTCAGTATCATCTAAACTTCCTCAAGAAAAGACTGCTGCAACTGTGT
GAAACCCTGAAAGTCCCTCCCAAAAAGCTACAAGATTTAACTAATGTGTCAGCTCTGCTG
AAGATGGAAAGGGCACAGCACAGAGCTAATGAAGAGGGTCTGGCATTATTGCAGGAAGAA
ACAGAGAAAATAGTAGAGACTGTAGAGTCAATGACTGGGAATATTCACAGCCTAAAGAAC
CAGGTTCATGTTCTGACAAGTGAGGTGGAAGAAGAGGAAAAGAAAATAAAACAGATGCTT
CAGATAGATGGTGGAGTACTTTCTCTTCCAGAACTTCCTCAGAAGAGTCTCAAAGCACCT
GTACTTCAGAAAGAAATTTTGACATCGATTCCAAACCACAACACTCTTCTGAAGGACTTG
GAAGTTCTACATAATTCATCCCAGATGAAGAACACGCTGACTTTCATCAAAGAAGTCCAT
AAAAGACTGGATGCCTCTTAAAGAGTTTTTTTTTTTTAGTTGTTTCATGTTAATTTAATG
TTCAGTGAAACAAGTTGGGTTCAATGCTCATTGCAGTGAGGGAGACCACATATCATGAAG
AACCCCAGGCAGGTCAGCAAGAGACAAAAGCAATATCCTGTCAGCAAATAATGGTCAAGG
AGGACATTAGTGGATTTTACGGGAAGGAGAGTTTTTAAGAAAGGAAACCTGTAGCACAGC
ATTTAATTATTTGTTTGTTTTGGCCACACCTGCCTTTTGGGGGAGGGGCCAGGAATCAAA
CCCGGGCCCCCGCAGAGACAATGCCAGATTTTTAACCTGGTGAGCCCCCAGTCAGCTTTT
GGTAGGGCAGCAGTTAAAAAAAAAGTATTTGTTTTGGAATATTTGGTACACCCCAGCCAA
GCAAATGAAATAAGATTTTACAAAATGTTTTAAAAACCCTTCACTTGGAAAATCACTGTT
TTGTGTTTTTAGAGTGAATAATAGAACCCCAGCTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7022644|dbj|BAA91672.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7022644|dbj|BAA91672.1|

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               41-190, gnl|bosTau2|chr23 (19917894-19917745)
               

               
               41-190, gnl|Hg17|chr6 (49556619-49556768)
               

               
               41-190, gnl|Mm7|chr17 (38967919-38967773)
               


               
               367-525, gnl|bosTau2|chr23 (19913475-19913316)
               

               
               367-525, gnl|canFam2|chr12 (20357242-20357634)
               

               
               367-525, gnl|dasNov1|scaffold_267129 (1194-875)
               

               
               367-525, gnl|echTel1|scaffold_316686 (60081-60402)
               

               
               367-525, gnl|hg17|chr6 (49567679-49568007)
               

               
               367-525, gnl|Hg17|chr6 (49567813-49567960)
               

               
               367-525, gnl|loxAfr1|scaffold_164208 (482-808)
               

               
               367-525, gnl|mm7|chr17 (38964390-38964069)
               

               
               367-525, gnl|Mm7|chr17 (38964258-38964111)
               

               
               367-525, gnl|monDom2|scaffold_18 (34550151-34549831)
               

               
               367-525, gnl|oryCun1|scaffold_68569 (988-670)
               

               
               367-525, gnl|panTro1|chr5 (50359715-50360043)
               

               
               367-525, gnl|rn3|chr9 (15841454-15841777)
               


               
               543-726, gnl|bosTau2|chr23 (19912404-19912221)
               

               
               543-726, gnl|Hg17|chr6 (49568851-49569023)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-190, gnl|bosTau2|chr23 (19917894-19917745)
               

               
               41-190, gnl|Hg17|chr6 (49556619-49556768)
               

               
               41-190, gnl|Mm7|chr17 (38967919-38967773)
               


               
               367-525, gnl|bosTau2|chr23 (19913475-19913316)
               

               
               367-525, gnl|canFam2|chr12 (20357242-20357634)
               

               
               367-525, gnl|dasNov1|scaffold_267129 (1194-875)
               

               
               367-525, gnl|echTel1|scaffold_316686 (60081-60402)
               

               
               367-525, gnl|hg17|chr6 (49567679-49568007)
               

               
               367-525, gnl|Hg17|chr6 (49567813-49567960)
               

               
               367-525, gnl|loxAfr1|scaffold_164208 (482-808)
               

               
               367-525, gnl|mm7|chr17 (38964390-38964069)
               

               
               367-525, gnl|Mm7|chr17 (38964258-38964111)
               

               
               367-525, gnl|monDom2|scaffold_18 (34550151-34549831)
               

               
               367-525, gnl|oryCun1|scaffold_68569 (988-670)
               

               
               367-525, gnl|panTro1|chr5 (50359715-50360043)
               

               
               367-525, gnl|rn3|chr9 (15841454-15841777)
               


               
               543-726, gnl|bosTau2|chr23 (19912404-19912221)
               

               
               543-726, gnl|Hg17|chr6 (49568851-49569023)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	41-190, gnl\|bosTau2\|chr23 (19917894-19917745)
	41-190, gnl\|Hg17\|chr6 (49556619-49556768)
	41-190, gnl\|Mm7\|chr17 (38967919-38967773)

	367-525, gnl\|bosTau2\|chr23 (19913475-19913316)
	367-525, gnl\|canFam2\|chr12 (20357242-20357634)
	367-525, gnl\|dasNov1\|scaffold_267129 (1194-875)
	367-525, gnl\|echTel1\|scaffold_316686 (60081-60402)
	367-525, gnl\|hg17\|chr6 (49567679-49568007)
	367-525, gnl\|Hg17\|chr6 (49567813-49567960)
	367-525, gnl\|loxAfr1\|scaffold_164208 (482-808)
	367-525, gnl\|mm7\|chr17 (38964390-38964069)
	367-525, gnl\|Mm7\|chr17 (38964258-38964111)
	367-525, gnl\|monDom2\|scaffold_18 (34550151-34549831)
	367-525, gnl\|oryCun1\|scaffold_68569 (988-670)
	367-525, gnl\|panTro1\|chr5 (50359715-50360043)
	367-525, gnl\|rn3\|chr9 (15841454-15841777)

	543-726, gnl\|bosTau2\|chr23 (19912404-19912221)
	543-726, gnl\|Hg17\|chr6 (49568851-49569023)