Ss1.1-Pig4-TMW8051K20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGTGCTACACCACTGACCCTGGGATTCCATTCGACTACTGTGCACTGCGGCGCTGCGAT GACGACCAACCACCATCCATCCTGGAGCCCCCAGACCCAGTGCTGTTTGAGAAGTGCGGC AAGAGGGTGACTCGCATGGATCCAAGGCGCTCCAAGCTGCGTGTGGTGGGGGGCCAACCT GGGAACTCACCCTGGACAGTCAGCTTACGAAACCGGCAGGGCCAGCACTTCTGTGGAGGC TCCCTAGTGAAGGAGCAATGGGTACTGACTGCCCGGCAGTGCTTCTCCTCCTGCCATGTA CCTCTCATGGGCTATGAGGTATGGCTGGGCACCCTGTTCCAGAACCCACAGCCTGGGGAG CCAGGTCTGCAGCGCATCCCAGTGGCCAAGATGATCTGTGGGCCCTCAGACTCCCAGCTT GTTCTGCTCAAGCTGGAGAGACCCGCAACCCTGAACCAGCGTGTGGCCCTGATCTGCCTG CCCCCTGAGCGGTATGTGGTGCCTCCAGGCACAAAGTGTGAGATTGCAGGCTGGGGTGAG ACTAAAGGTACAGGGGACGATACCGTCCTGAACATGGCCTCCCTTAATGTCATCTCCAAC CAGGAATGTAATGTCAAGCACCGAGGACGCGTACGCGAGAGTGAGATGTGCACTGAGGGA CTGTTGGCCCCTGTGGGTGCCTGTGAGGGTGACTACGGGGGCCCGCTTGCCTGCTTTACC CACGACTGCTGGGTCCTGGAGGGAATTATAATCCCCAACCGAGTGTGTGCACGGCCCCGC TGGCCAGCCATCTTCATGCGTGTCTCTGTGTTTGTGGACTGGATTAACAAGGTCATGCGG CTGGGCTAGTCCTAGCTTCAGTCCTGTTTGCCTTGGGGAGGACAAAGCCGTCTGTTAGAC ATAAAGCCACCTTTCCTCTCCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGTGCTACACCACTGACCCTGGGATTCCATTCGACTACTGTGCACTGCGGCGCTGCGAT GACGACCAACCACCATCCATCCTGGAGCCCCCAGACCCAGTGCTGTTTGAGAAGTGCGGC AAGAGGGTGACTCGCATGGATCCAAGGCGCTCCAAGCTGCGTGTGGTGGGGGGCCAACCT GGGAACTCACCCTGGACAGTCAGCTTACGAAACCGGCAGGGCCAGCACTTCTGTGGAGGC TCCCTAGTGAAGGAGCAATGGGTACTGACTGCCCGGCAGTGCTTCTCCTCCTGCCATGTA CCTCTCATGGGCTATGAGGTATGGCTGGGCACCCTGTTCCAGAACCCACAGCCTGGGGAG CCAGGTCTGCAGCGCATCCCAGTGGCCAAGATGATCTGTGGGCCCTCAGACTCCCAGCTT GTTCTGCTCAAGCTGGAGAGACCCGCAACCCTGAACCAGCGTGTGGCCCTGATCTGCCTG CCCCCTGAGCGGTATGTGGTGCCTCCAGGCACAAAGTGTGAGATTGCAGGCTGGGGTGAG ACTAAAGGTACAGGGGACGATACCGTCCTGAACATGGCCTCCCTTAATGTCATCTCCAAC CAGGAATGTAATGTCAAGCACCGAGGACGCGTACGCGAGAGTGAGATGTGCACTGAGGGA CTGTTGGCCCCTGTGGGTGCCTGTGAGGGTGACTACGGGGGCCCGCTTGCCTGCTTTACC CACGACTGCTGGGTCCTGGAGGGAATTATAATCCCCAACCGAGTGTGTGCACGGCCCCGC TGGCCAGCCATCTTCATGCGTGTCTCTGTGTTTGTGGACTGGATTAACAAGGTCATGCGG CTGGGCTAGTCCTAGCTTCAGTCCTGTTTGCCTTGGGGAGGACAAAGCCGTCTGTTAGAC ATAAAGCCACCTTTCCTCTCCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 323-440, - strand, RNAz p=0.74294 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 323-440, - strand, RNAz p=0.74294 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 88-216, gnl|bosTau2|chr22 (38064875-38064747) | |
| 88-216, gnl|canFam2|chr20 (42585451-42585585) | |
| 88-216, gnl|canFam2|chr20 (42585603-42585450) | |
| 88-216, gnl|danRer3|chr2 (5308986-5308857) | |
| 88-216, gnl|danRer3|chr2 (5308838-5308987) | |
| 88-216, gnl|echTel1|scaffold_307443 (5150-5284) | |
| 88-216, gnl|echTel1|scaffold_307443 (5287-5149) | |
| 88-216, gnl|fr1|chrUn (102589615-102589489) | |
| 88-216, gnl|fr1|chrUn (102589463-102589619) | |
| 88-216, gnl|hg17|chr1 (16720676-16720810) | |
| 88-216, gnl|hg17|chr3 (49697673-49697828) | |
| 88-216, gnl|Hg17|chr3 (49697826-49697698) | |
| 88-216, gnl|mm7|chr9 (107813163-107813285) | |
| 88-216, gnl|mm7|chr9 (107813302-107813166) | |
| 88-216, gnl|Mm7|chr9 (107813164-107813278) | |
| 88-216, gnl|monDom2|scaffold_5 (75212874-75212997) | |
| 88-216, gnl|monDom2|scaffold_5 (75212997-75212873) | |
| 88-216, gnl|oryCun1|scaffold_191945 (21941-22075) | |
| 88-216, gnl|oryCun1|scaffold_191945 (22080-21940) | |
| 88-216, gnl|panTro1|chr2 (51232738-51232604) | |
| 88-216, gnl|panTro1|chr2 (51232584-51232739) | |
| 88-216, gnl|rheMac2|chr2 (86735865-86735999) | |
| 88-216, gnl|rheMac2|chr2 (86736019-86735864) | |
| 88-216, gnl|rn3|chr8 (113370770-113370892) | |
| 88-216, gnl|rn3|chr8 (113370908-113370769) | |
| 88-216, gnl|tetNig1|chrUn_random (129401340-129401214) | |
| 88-216, gnl|tetNig1|chrUn_random (129401192-129401340) | |
| 88-216, gnl|xenTro1|scaffold_193 (1126563-1126438) | |
| 88-216, gnl|xenTro1|scaffold_193 (1126438-1126564) | |
| 276-440, gnl|bosTau2|chr22 (38064387-38064223) | |
| 276-440, gnl|canFam2|chr20 (42586116-42585955) | |
| 276-440, gnl|danRer3|chr2 (5306756-5306911) | |
| 276-440, gnl|echTel1|scaffold_307443 (5727-5565) | |
| 276-440, gnl|fr1|chrUn (178645448-178645327) | |
| 276-440, gnl|galGal2|chr12 (2188002-2187840) | |
| 276-440, gnl|hg17|chr3 (49697170-49697332) | |
| 276-440, gnl|Hg17|chr3 (49697339-49697175) | |
| 276-440, gnl|loxAfr1|scaffold_37867 (16694-16856) | |
| 276-440, gnl|mm7|chr9 (107813789-107813625) | |
| 276-440, gnl|Mm7|chr9 (107813616-107813782) | |
| 276-440, gnl|monDom2|scaffold_5 (75214185-75214023) | |
| 276-440, gnl|panTro1|chr2 (51232081-51232243) | |
| 276-440, gnl|rheMac2|chr2 (86736522-86736360) | |
| 276-440, gnl|rn3|chr8 (113371456-113371292) | |
| 276-440, gnl|tetNig1|chrUn_random (129400699-129400868) | |
| 276-440, gnl|xenTro1|scaffold_193 (1123824-1123986) | |
| 686-919, gnl|bosTau2|chr22 (38063706-38063473) | |
| 686-919, gnl|Hg17|chr3 (49696628-49696395) | |
| 686-919, gnl|Mm7|chr9 (107814347-107814570) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 88-216, gnl|bosTau2|chr22 (38064875-38064747) | |
| 88-216, gnl|canFam2|chr20 (42585451-42585585) | |
| 88-216, gnl|canFam2|chr20 (42585603-42585450) | |
| 88-216, gnl|danRer3|chr2 (5308986-5308857) | |
| 88-216, gnl|danRer3|chr2 (5308838-5308987) | |
| 88-216, gnl|echTel1|scaffold_307443 (5150-5284) | |
| 88-216, gnl|echTel1|scaffold_307443 (5287-5149) | |
| 88-216, gnl|fr1|chrUn (102589615-102589489) | |
| 88-216, gnl|fr1|chrUn (102589463-102589619) | |
| 88-216, gnl|hg17|chr1 (16720676-16720810) | |
| 88-216, gnl|hg17|chr3 (49697673-49697828) | |
| 88-216, gnl|Hg17|chr3 (49697826-49697698) | |
| 88-216, gnl|mm7|chr9 (107813163-107813285) | |
| 88-216, gnl|mm7|chr9 (107813302-107813166) | |
| 88-216, gnl|Mm7|chr9 (107813164-107813278) | |
| 88-216, gnl|monDom2|scaffold_5 (75212874-75212997) | |
| 88-216, gnl|monDom2|scaffold_5 (75212997-75212873) | |
| 88-216, gnl|oryCun1|scaffold_191945 (21941-22075) | |
| 88-216, gnl|oryCun1|scaffold_191945 (22080-21940) | |
| 88-216, gnl|panTro1|chr2 (51232738-51232604) | |
| 88-216, gnl|panTro1|chr2 (51232584-51232739) | |
| 88-216, gnl|rheMac2|chr2 (86735865-86735999) | |
| 88-216, gnl|rheMac2|chr2 (86736019-86735864) | |
| 88-216, gnl|rn3|chr8 (113370770-113370892) | |
| 88-216, gnl|rn3|chr8 (113370908-113370769) | |
| 88-216, gnl|tetNig1|chrUn_random (129401340-129401214) | |
| 88-216, gnl|tetNig1|chrUn_random (129401192-129401340) | |
| 88-216, gnl|xenTro1|scaffold_193 (1126563-1126438) | |
| 88-216, gnl|xenTro1|scaffold_193 (1126438-1126564) | |
| 276-440, gnl|bosTau2|chr22 (38064387-38064223) | |
| 276-440, gnl|canFam2|chr20 (42586116-42585955) | |
| 276-440, gnl|danRer3|chr2 (5306756-5306911) | |
| 276-440, gnl|echTel1|scaffold_307443 (5727-5565) | |
| 276-440, gnl|fr1|chrUn (178645448-178645327) | |
| 276-440, gnl|galGal2|chr12 (2188002-2187840) | |
| 276-440, gnl|hg17|chr3 (49697170-49697332) | |
| 276-440, gnl|Hg17|chr3 (49697339-49697175) | |
| 276-440, gnl|loxAfr1|scaffold_37867 (16694-16856) | |
| 276-440, gnl|mm7|chr9 (107813789-107813625) | |
| 276-440, gnl|Mm7|chr9 (107813616-107813782) | |
| 276-440, gnl|monDom2|scaffold_5 (75214185-75214023) | |
| 276-440, gnl|panTro1|chr2 (51232081-51232243) | |
| 276-440, gnl|rheMac2|chr2 (86736522-86736360) | |
| 276-440, gnl|rn3|chr8 (113371456-113371292) | |
| 276-440, gnl|tetNig1|chrUn_random (129400699-129400868) | |
| 276-440, gnl|xenTro1|scaffold_193 (1123824-1123986) | |
| 686-919, gnl|bosTau2|chr22 (38063706-38063473) | |
| 686-919, gnl|Hg17|chr3 (49696628-49696395) | |
| 686-919, gnl|Mm7|chr9 (107814347-107814570) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cli (0.152812) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.152812) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| cty (0.10408) |