Non-Coding RNA Search

Ss1.1-Pig4-TMW8051K23.3

Sequence:


               
               ACAGATTTACTTGAAGACACCCCGCGGCAGTGCCGGATATGTGGCGGGCTCGCCATGTAC
GAGTGCAGAGAGTGCTACGAGGACCCCGACATCTCAGCTGGGAAAATCAAGCAGTTCTGT
AAAACCTGCAACACTCAAGTCCACCTTCACCCCAAGAGGTTGAATCATAAATATAACCCC
GTCTCACTTCCCAAAGATTTACCTGACTGGGACTGGAGACACGGCTGCATCCCCTGCCAG
AAGATGGAGTTATTCGCTGTTCTCTGCATAGAAACGAGCCACTATGTCGCCTTCGTGAAG
TACGGGAAGGACGACTCCGCCTGGCTCTTCTTTGACAGCATGGCTGATCGGGATGGTGGT
CAGAATGGCTTCAACATTCCTCAGGTGACCCCATGCCCAGAAGTAGGAGAGTACTTGAAA
ATGTCTCTAGAAGATCTGCATTCCTTGGACTCGAGAAGAATCCAGGGCTGTGCACGAAGA
CTTCTCTGTGATGCGTACATGTGCATGTACCAGAGTCCAACAATGAGTCTGTACAAATAA
ACGGGGTCATCTGGACAGGTGCAGACACTGAATGCCAAGTTTTAATGTTGCGTTTCACTC
GAGCTGGCAGTTCTGGGCAGCATCCATTGCCGGCAATGGATGTCTCTGCGGTGATGATCC
TTCAGAAAAGGATTCCTGCGTTTAAAAACAAATTGCTTTTGTGTTACTGAAGTATTTAAT
AAGAAGCATTTTGCACTCTAGAGAGTATGTTTGTGTTGGTTTTTTAAGAAGTTTAAATGA
AGTTATTAATACCTGAAGCTTTAAGTTAAGTGCATTGATCATCATAAGATATTTTTGGAA
GCATAAAATTTTAATTGTGACAGTTTAAAAACCTCTTTTAGTCCATTGAGAATGTAAATA
AATGTGTCTTCTTTATGGACCAAGGATATGAAATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGATTTACTTGAAGACACCCCGCGGCAGTGCCGGATATGTGGCGGGCTCGCCATGTAC
GAGTGCAGAGAGTGCTACGAGGACCCCGACATCTCAGCTGGGAAAATCAAGCAGTTCTGT
AAAACCTGCAACACTCAAGTCCACCTTCACCCCAAGAGGTTGAATCATAAATATAACCCC
GTCTCACTTCCCAAAGATTTACCTGACTGGGACTGGAGACACGGCTGCATCCCCTGCCAG
AAGATGGAGTTATTCGCTGTTCTCTGCATAGAAACGAGCCACTATGTCGCCTTCGTGAAG
TACGGGAAGGACGACTCCGCCTGGCTCTTCTTTGACAGCATGGCTGATCGGGATGGTGGT
CAGAATGGCTTCAACATTCCTCAGGTGACCCCATGCCCAGAAGTAGGAGAGTACTTGAAA
ATGTCTCTAGAAGATCTGCATTCCTTGGACTCGAGAAGAATCCAGGGCTGTGCACGAAGA
CTTCTCTGTGATGCGTACATGTGCATGTACCAGAGTCCAACAATGAGTCTGTACAAATAA
ACGGGGTCATCTGGACAGGTGCAGACACTGAATGCCAAGTTTTAATGTTGCGTTTCACTC
GAGCTGGCAGTTCTGGGCAGCATCCATTGCCGGCAATGGATGTCTCTGCGGTGATGATCC
TTCAGAAAAGGATTCCTGCGTTTAAAAACAAATTGCTTTTGTGTTACTGAAGTATTTAAT
AAGAAGCATTTTGCACTCTAGAGAGTATGTTTGTGTTGGTTTTTTAAGAAGTTTAAATGA
AGTTATTAATACCTGAAGCTTTAAGTTAAGTGCATTGATCATCATAAGATATTTTTGGAA
GCATAAAATTTTAATTGTGACAGTTTAAAAACCTCTTTTAGTCCATTGAGAATGTAAATA
AATGTGTCTTCTTTATGGACCAAGGATATGAAATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34875758|ref|XP_214654.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34875758|ref|XP_214654.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               355-553, - strand, RNAz p=0.941376
               

               
               594-712, + strand, RNAz p=0.626812

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               355-553, - strand, RNAz p=0.941376
               

               
               594-712, + strand, RNAz p=0.626812

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC012342, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC012342, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               20-140, gnl|bosTau2|chr18 (18417035-18417155)
               

               
               20-140, gnl|canFam2|chr2 (67451022-67450883)
               

               
               20-140, gnl|danRer3|chr7 (27645410-27645284)
               

               
               20-140, gnl|dasNov1|scaffold_12405 (809-670)
               

               
               20-140, gnl|fr1|chrUn (282935874-282935745)
               

               
               20-140, gnl|galGal2|chr11 (6208273-6208141)
               

               
               20-140, gnl|hg17|chr16 (49384953-49385092)
               

               
               20-140, gnl|Hg17|chr16 (49384958-49385078)
               

               
               20-140, gnl|loxAfr1|scaffold_7721 (71590-71451)
               

               
               20-140, gnl|mm7|chr8 (87337184-87337322)
               

               
               20-140, gnl|Mm7|chr8 (87337189-87337309)
               

               
               20-140, gnl|monDom2|scaffold_35 (15722273-15722412)
               

               
               20-140, gnl|oryCun1|scaffold_123845 (4790-4908)
               

               
               20-140, gnl|panTro1|chrUn_random (13207518-13207657)
               

               
               20-140, gnl|rheMac2|chr20 (49014273-49014412)
               

               
               20-140, gnl|rn3|chr19 (19601395-19601258)
               

               
               20-140, gnl|tetNig1|chrUn_random (92583454-92583594)
               

               
               20-140, gnl|xenTro1|scaffold_167 (326990-327127)
               


               
               355-936, gnl|bosTau2|chr18 (18419302-18419876)
               

               
               355-936, gnl|Hg17|chr16 (49387735-49388311)
               

               
               355-936, gnl|Mm7|chr8 (87339189-87339760)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-140, gnl|bosTau2|chr18 (18417035-18417155)
               

               
               20-140, gnl|canFam2|chr2 (67451022-67450883)
               

               
               20-140, gnl|danRer3|chr7 (27645410-27645284)
               

               
               20-140, gnl|dasNov1|scaffold_12405 (809-670)
               

               
               20-140, gnl|fr1|chrUn (282935874-282935745)
               

               
               20-140, gnl|galGal2|chr11 (6208273-6208141)
               

               
               20-140, gnl|hg17|chr16 (49384953-49385092)
               

               
               20-140, gnl|Hg17|chr16 (49384958-49385078)
               

               
               20-140, gnl|loxAfr1|scaffold_7721 (71590-71451)
               

               
               20-140, gnl|mm7|chr8 (87337184-87337322)
               

               
               20-140, gnl|Mm7|chr8 (87337189-87337309)
               

               
               20-140, gnl|monDom2|scaffold_35 (15722273-15722412)
               

               
               20-140, gnl|oryCun1|scaffold_123845 (4790-4908)
               

               
               20-140, gnl|panTro1|chrUn_random (13207518-13207657)
               

               
               20-140, gnl|rheMac2|chr20 (49014273-49014412)
               

               
               20-140, gnl|rn3|chr19 (19601395-19601258)
               

               
               20-140, gnl|tetNig1|chrUn_random (92583454-92583594)
               

               
               20-140, gnl|xenTro1|scaffold_167 (326990-327127)
               


               
               355-936, gnl|bosTau2|chr18 (18419302-18419876)
               

               
               355-936, gnl|Hg17|chr16 (49387735-49388311)
               

               
               355-936, gnl|Mm7|chr8 (87339189-87339760)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               tes (0.415628)
               

               
               bfe (0.299715)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               bfe (0.299715)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	355-553, - strand, RNAz p=0.941376
	594-712, + strand, RNAz p=0.626812

	20-140, gnl\|bosTau2\|chr18 (18417035-18417155)
	20-140, gnl\|canFam2\|chr2 (67451022-67450883)
	20-140, gnl\|danRer3\|chr7 (27645410-27645284)
	20-140, gnl\|dasNov1\|scaffold_12405 (809-670)
	20-140, gnl\|fr1\|chrUn (282935874-282935745)
	20-140, gnl\|galGal2\|chr11 (6208273-6208141)
	20-140, gnl\|hg17\|chr16 (49384953-49385092)
	20-140, gnl\|Hg17\|chr16 (49384958-49385078)
	20-140, gnl\|loxAfr1\|scaffold_7721 (71590-71451)
	20-140, gnl\|mm7\|chr8 (87337184-87337322)
	20-140, gnl\|Mm7\|chr8 (87337189-87337309)
	20-140, gnl\|monDom2\|scaffold_35 (15722273-15722412)
	20-140, gnl\|oryCun1\|scaffold_123845 (4790-4908)
	20-140, gnl\|panTro1\|chrUn_random (13207518-13207657)
	20-140, gnl\|rheMac2\|chr20 (49014273-49014412)
	20-140, gnl\|rn3\|chr19 (19601395-19601258)
	20-140, gnl\|tetNig1\|chrUn_random (92583454-92583594)
	20-140, gnl\|xenTro1\|scaffold_167 (326990-327127)

	355-936, gnl\|bosTau2\|chr18 (18419302-18419876)
	355-936, gnl\|Hg17\|chr16 (49387735-49388311)
	355-936, gnl\|Mm7\|chr8 (87339189-87339760)

	tes (0.415628)
	bfe (0.299715)
	aor (0.195274)
	nep (0.183925)
	lin (0.145603)
	csk (0.140746)
	ssp (0.13552)
	kid (0.129735)
	med (0.116252)
	jca (0.11396)