Non-Coding RNA Search

Ss1.1-Pig4-TMW8051K24.3

Sequence:


               
               GATTAGACCATAACATTCCCTGACTCCCAACCCTCTAGGGACCCCACCCCAAACTTTAGT
TCATTAGCTGAAGAAAGTAGCCTCAGTGTTATTAGAAGACTGCAGTCTTGTCCATAAGGA
CTCAGGGAAGGGCATTGTCCCTTCTTCCTAATGCTGAGCCCAAGCCCAGGGTGCCGCAAA
CCTCCCAGGCAGTGCCCCTCAGTCCCACAGTGACTTCTCTGCACCCCCTTCATCCTGGAA
CCCCCTCTCCCATGGGAAGGGTGTGTCTGGAGGAGAGGGGGGGGCCGCCTGGCCTGTCTT
GGGTTTTGTCACACTCATTTTGACTGAATAAAAGTCCTGTTGCCAAAGGTTTTTTTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACTTCCCCATTTCCAGGTGTGAAA
GAAAATGTCTACCTCGAGGCTCGCTGGCTCTCGGGCCTGTGCTGTGTCCCTGGACCCTGC
CTCCTAGGGCTCCTCACCAAGGGTGGGCCTCTCGGGGCCTGCCGAAATAAAGATGGAATT
GGTCAAAGAACGTTTTTTGAAAAAGCCAAAAATAAGAGGAAAATTCATTTCTGGGAGTAT
AAATTGTTACTCGAACTAGCCACCTCCCAGCATGCTGCCAGCGCCCCGTCTCGTCTGTTT
GTCCACTCCCGTGGGGACTCTGTGTCAGCCAGCTCTTCCTTGACGGGGACCCCCAGGACC
CTCTATGCCCCTGGGCCCAGAGAGGGTGAGACGGTCACCCCGCAGCCTGCCTCCTGTCCC
ACCCAGACACAGAGCCGTGGGGGCAGGCTGGCCCTTGGAATGTACTGTGTGTGCCGGGTG
TGCGTGTGCAAGGGCAGGTCCCCAGCCCTCTGTCCTATGGGACACCGCCAGCCTGACCCA
CTCCCTGGACCGTGGAACAACCACTGTCAGCAAATGTGGCCGGAAGCTATTTTTCTACAA
GGTGTGTTTAAGGATTTATGTTCTTGTGACTTCTTGTTTTTCTCTTTTCTATTGTGTTGT
TCTTTGAAAGGCTTAGTTAAAAGATGGAAAACAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTAGACCATAACATTCCCTGACTCCCAACCCTCTAGGGACCCCACCCCAAACTTTAGT
TCATTAGCTGAAGAAAGTAGCCTCAGTGTTATTAGAAGACTGCAGTCTTGTCCATAAGGA
CTCAGGGAAGGGCATTGTCCCTTCTTCCTAATGCTGAGCCCAAGCCCAGGGTGCCGCAAA
CCTCCCAGGCAGTGCCCCTCAGTCCCACAGTGACTTCTCTGCACCCCCTTCATCCTGGAA
CCCCCTCTCCCATGGGAAGGGTGTGTCTGGAGGAGAGGGGGGGGCCGCCTGGCCTGTCTT
GGGTTTTGTCACACTCATTTTGACTGAATAAAAGTCCTGTTGCCAAAGGTTTTTTTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACTTCCCCATTTCCAGGTGTGAAA
GAAAATGTCTACCTCGAGGCTCGCTGGCTCTCGGGCCTGTGCTGTGTCCCTGGACCCTGC
CTCCTAGGGCTCCTCACCAAGGGTGGGCCTCTCGGGGCCTGCCGAAATAAAGATGGAATT
GGTCAAAGAACGTTTTTTGAAAAAGCCAAAAATAAGAGGAAAATTCATTTCTGGGAGTAT
AAATTGTTACTCGAACTAGCCACCTCCCAGCATGCTGCCAGCGCCCCGTCTCGTCTGTTT
GTCCACTCCCGTGGGGACTCTGTGTCAGCCAGCTCTTCCTTGACGGGGACCCCCAGGACC
CTCTATGCCCCTGGGCCCAGAGAGGGTGAGACGGTCACCCCGCAGCCTGCCTCCTGTCCC
ACCCAGACACAGAGCCGTGGGGGCAGGCTGGCCCTTGGAATGTACTGTGTGTGCCGGGTG
TGCGTGTGCAAGGGCAGGTCCCCAGCCCTCTGTCCTATGGGACACCGCCAGCCTGACCCA
CTCCCTGGACCGTGGAACAACCACTGTCAGCAAATGTGGCCGGAAGCTATTTTTCTACAA
GGTGTGTTTAAGGATTTATGTTCTTGTGACTTCTTGTTTTTCTCTTTTCTATTGTGTTGT
TCTTTGAAAGGCTTAGTTAAAAGATGGAAAACAAAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               40-188, - strand, RNAz p=0.997653
               

               
               668-827, - strand, RNAz p=0.880265

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-188, - strand, RNAz p=0.997653
               

               
               668-827, - strand, RNAz p=0.880265

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-348, gnl|bosTau2|chr10 (8714877-8714523)
               

               
               1-348, gnl|Hg17|chr15 (63406875-63406522)
               

               
               1-348, gnl|Mm7|chr9 (65216322-65216668)
               


               
               365-1055, gnl|bosTau2|chr10 (8715669-8714993)
               

               
               365-1055, gnl|Hg17|chr15 (63407706-63406986)
               

               
               365-1055, gnl|Mm7|chr9 (65215510-65216200)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-348, gnl|bosTau2|chr10 (8714877-8714523)
               

               
               1-348, gnl|Hg17|chr15 (63406875-63406522)
               

               
               1-348, gnl|Mm7|chr9 (65216322-65216668)
               


               
               365-1055, gnl|bosTau2|chr10 (8715669-8714993)
               

               
               365-1055, gnl|Hg17|chr15 (63407706-63406986)
               

               
               365-1055, gnl|Mm7|chr9 (65215510-65216200)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cag (0.151194)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)

	40-188, - strand, RNAz p=0.997653
	668-827, - strand, RNAz p=0.880265

	1-348, gnl\|bosTau2\|chr10 (8714877-8714523)
	1-348, gnl\|Hg17\|chr15 (63406875-63406522)
	1-348, gnl\|Mm7\|chr9 (65216322-65216668)

	365-1055, gnl\|bosTau2\|chr10 (8715669-8714993)
	365-1055, gnl\|Hg17\|chr15 (63407706-63406986)
	365-1055, gnl\|Mm7\|chr9 (65215510-65216200)