Ss1.1-Pig4-TMW8051L02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGGTCCAAGTGGAGGCGCGGAACAGCCGGAGCGACCGCGACCCGCGATGGCGCTGCTGG GCGCTCTTGTCTGCTGCCTGCTGGCCACCTGGCACAGCCGTCGGGGCCTCGCGCTGCCCC TGGCTCCCACTGGCGGCCAGAGTCCCCCTCCCGTGGTGGGACAGTTTTGGCATGTGACTG ACTTGCACTTAGACCCTACTTACCACATCACAGATGACCACACAAAAGTGTGTGCTTCAT CCAAAGGGGCAAACGCCTCCAATCCTGGCCCTTTTGGAGATGTTCTGTGTGATTCTCCTT ATCACCTCATTTTGTCAGCATTTGATTTTATTAAAAAGTCAGGACAAGAAGCATCTTTCA TGATATGGACAGGGGATAGCCCACCTCATGTTCCAGTGCATGAACTCTCAACAGACAGAG TCATAAATGTGATTGCTAATATGACAACCACTGTCCAGAGGCTCTTTCCAGATCTCCAGG TTTTCCCTGCACTGGGTAATCATGACTACTGGCCACAGGATCAACTGCCTATAGTCACCA GTGAGGTGTACAATGCAGTAGCAAACCTCTGGAAACCATGGCTGGATGAGGAAGCTATAA GTACTTTAAGGAAAGGTGGCTTTTATTCACAGAAAGTTTCGACTAATCTGAACCTTAGGA TCATCAGTCTCAACACAAATTTGTACTACAGCCCAAATGTCGTGACCCTAAATAAGACTG ACCCAGCGAATCAGTTTGAATGGCTAGAAAATACACTGAACATCTCTCAGCAAAAGAAGG AGAAGGTGTACATCATAGCTCATGTTCCAGTGGGGTATCTGCCTTATTCAAAGAGCACCA CGGCAATGAGAGAATACTATAATGAAAAACTGATAGATATTTTTAGAAAATATAGTGACA TCATTGCAGGACAATTTTATGGACACACTCACAGAGATAGCATCATGGTGCTTTCAGACA AAAAAGGAAATCCAATAAATTCTTTGTTTGTGGCACCTGCTGTTACCCCAGTGAAGAATG TTTTAGAAAAACTGACCAACAATCCTGGCATCAGACTATTTCAGTATGATCCTCGTGATT ATAAATTAGTGAATATGCTGCAGTACTACTTGAACCTGACTGATGCTAATCTAAAGGGAG AATCCAATTGGAAGCTGGAGTATAACCTGACCCAGACCTATGACATTGAAGATTTGCAGC CAAAAAATTTGTATGGATTAGCTAAACAATTTGCAATCCTAGACAGTAAACAGTTTATAA AATACTACAGTTACTTCTTTGTGAGTTATGATACCAGTGTAACTTGTGATGAGACATGTA AGGCCTTTCAGATTTGTGCAATTATGTATCTTGATGTTATTTCTTATACAGACTGCCTCA AACATTATATAAAACGCAATCCATAGTAGTTCACAGTTTATACTCAGAAAATTTGACATT GCTCTATTTCTGAGATCACTTTGTGGGAATTGTTATGCAAATCTCTGTGAGTTACTGAAT GTGAGAAGAATTACTGTCTTTGGTTTTTTATAATGCCCAAATATAGAAATTTTTAACATT CTAAATTTTTCATTATATTGAATATATTTAAATTTCCCATTACGCGAATGATTTTTGGAT GTAAATATCTAATCTTCCAGTTTATATAATTATATCTAATTTATACTCTTGTTGAAATTG TCATTTATACAATAAAACAAATTACTTTTCCCTAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGGTCCAAGTGGAGGCGCGGAACAGCCGGAGCGACCGCGACCCGCGATGGCGCTGCTGG GCGCTCTTGTCTGCTGCCTGCTGGCCACCTGGCACAGCCGTCGGGGCCTCGCGCTGCCCC TGGCTCCCACTGGCGGCCAGAGTCCCCCTCCCGTGGTGGGACAGTTTTGGCATGTGACTG ACTTGCACTTAGACCCTACTTACCACATCACAGATGACCACACAAAAGTGTGTGCTTCAT CCAAAGGGGCAAACGCCTCCAATCCTGGCCCTTTTGGAGATGTTCTGTGTGATTCTCCTT ATCACCTCATTTTGTCAGCATTTGATTTTATTAAAAAGTCAGGACAAGAAGCATCTTTCA TGATATGGACAGGGGATAGCCCACCTCATGTTCCAGTGCATGAACTCTCAACAGACAGAG TCATAAATGTGATTGCTAATATGACAACCACTGTCCAGAGGCTCTTTCCAGATCTCCAGG TTTTCCCTGCACTGGGTAATCATGACTACTGGCCACAGGATCAACTGCCTATAGTCACCA GTGAGGTGTACAATGCAGTAGCAAACCTCTGGAAACCATGGCTGGATGAGGAAGCTATAA GTACTTTAAGGAAAGGTGGCTTTTATTCACAGAAAGTTTCGACTAATCTGAACCTTAGGA TCATCAGTCTCAACACAAATTTGTACTACAGCCCAAATGTCGTGACCCTAAATAAGACTG ACCCAGCGAATCAGTTTGAATGGCTAGAAAATACACTGAACATCTCTCAGCAAAAGAAGG AGAAGGTGTACATCATAGCTCATGTTCCAGTGGGGTATCTGCCTTATTCAAAGAGCACCA CGGCAATGAGAGAATACTATAATGAAAAACTGATAGATATTTTTAGAAAATATAGTGACA TCATTGCAGGACAATTTTATGGACACACTCACAGAGATAGCATCATGGTGCTTTCAGACA AAAAAGGAAATCCAATAAATTCTTTGTTTGTGGCACCTGCTGTTACCCCAGTGAAGAATG TTTTAGAAAAACTGACCAACAATCCTGGCATCAGACTATTTCAGTATGATCCTCGTGATT ATAAATTAGTGAATATGCTGCAGTACTACTTGAACCTGACTGATGCTAATCTAAAGGGAG AATCCAATTGGAAGCTGGAGTATAACCTGACCCAGACCTATGACATTGAAGATTTGCAGC CAAAAAATTTGTATGGATTAGCTAAACAATTTGCAATCCTAGACAGTAAACAGTTTATAA AATACTACAGTTACTTCTTTGTGAGTTATGATACCAGTGTAACTTGTGATGAGACATGTA AGGCCTTTCAGATTTGTGCAATTATGTATCTTGATGTTATTTCTTATACAGACTGCCTCA AACATTATATAAAACGCAATCCATAGTAGTTCACAGTTTATACTCAGAAAATTTGACATT GCTCTATTTCTGAGATCACTTTGTGGGAATTGTTATGCAAATCTCTGTGAGTTACTGAAT GTGAGAAGAATTACTGTCTTTGGTTTTTTATAATGCCCAAATATAGAAATTTTTAACATT CTAAATTTTTCATTATATTGAATATATTTAAATTTCCCATTACGCGAATGATTTTTGGAT GTAAATATCTAATCTTCCAGTTTATATAATTATATCTAATTTATACTCTTGTTGAAATTG TCATTTATACAATAAAACAAATTACTTTTCCCTAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 198-317, + strand, RNAz p=0.766362 | |
| 257-374, - strand, RNAz p=0.565664 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 198-317, + strand, RNAz p=0.766362 | |
| 257-374, - strand, RNAz p=0.565664 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 159-374, gnl|bosTau2|chr9 (14483908-14483693) | |
| 159-374, gnl|canFam2|chr1 (65153694-65153895) | |
| 159-374, gnl|danRer3|chr20 (47696112-47695914) | |
| 159-374, gnl|echTel1|scaffold_224655 (4713-4511) | |
| 159-374, gnl|fr1|chrUn (281979893-281980091) | |
| 159-374, gnl|galGal2|chr3 (59661731-59661530) | |
| 159-374, gnl|hg17|chr6 (123158515-123158717) | |
| 159-374, gnl|Hg17|chr6 (123158520-123158735) | |
| 159-374, gnl|mm7|chr10 (57622360-57622562) | |
| 159-374, gnl|Mm7|chr10 (57622365-57622580) | |
| 159-374, gnl|monDom2|scaffold_0 (92284776-92284575) | |
| 159-374, gnl|panTro1|chr5 (125682873-125683075) | |
| 159-374, gnl|rheMac2|chr4 (141147363-141147161) | |
| 159-374, gnl|rn3|chr20 (36848662-36848864) | |
| 159-374, gnl|tetNig1|chrUn_random (90002526-90002348) | |
| 159-374, gnl|xenTro1|scaffold_259 (1340123-1340332) | |
| 516-617, gnl|bosTau2|chr9 (14477535-14477434) | |
| 516-617, gnl|canFam2|chr1 (65159542-65159681) | |
| 516-617, gnl|danRer3|chr20 (47693756-47693628) | |
| 516-617, gnl|dasNov1|scaffold_106714 (5654-5515) | |
| 516-617, gnl|echTel1|scaffold_172415 (3259-3120) | |
| 516-617, gnl|galGal2|chr3 (59657873-59657745) | |
| 516-617, gnl|hg17|chr6 (123164122-123164261) | |
| 516-617, gnl|Hg17|chr6 (123164151-123164252) | |
| 516-617, gnl|loxAfr1|scaffold_1976 (8374-8513) | |
| 516-617, gnl|mm7|chr10 (57626990-57627129) | |
| 516-617, gnl|Mm7|chr10 (57627019-57627120) | |
| 516-617, gnl|monDom2|scaffold_0 (92279112-92278975) | |
| 516-617, gnl|oryCun1|scaffold_172704 (14083-13947) | |
| 516-617, gnl|panTro1|chr5 (125688510-125688649) | |
| 516-617, gnl|rheMac2|chr4 (141141774-141141635) | |
| 516-617, gnl|rn3|chr20 (36850940-36851079) | |
| 516-617, gnl|xenTro1|scaffold_259 (1346971-1347079) | |
| 784-987, gnl|bosTau2|chr9 (14475969-14475766) | |
| 784-987, gnl|canFam2|chr1 (65161039-65161249) | |
| 784-987, gnl|danRer3|chr20 (47691116-47690910) | |
| 784-987, gnl|dasNov1|scaffold_106714 (2330-2120) | |
| 784-987, gnl|echTel1|scaffold_321356 (10617-10411) | |
| 784-987, gnl|fr1|chrUn (281981052-281981241) | |
| 784-987, gnl|galGal2|chr3 (59655266-59655057) | |
| 784-987, gnl|hg17|chr6 (123167728-123167938) | |
| 784-987, gnl|Hg17|chr6 (123167751-123167954) | |
| 784-987, gnl|loxAfr1|scaffold_1976 (11706-11913) | |
| 784-987, gnl|mm7|chr10 (57629317-57629517) | |
| 784-987, gnl|Mm7|chr10 (57629330-57629523) | |
| 784-987, gnl|monDom2|scaffold_0 (92267726-92267515) | |
| 784-987, gnl|oryCun1|scaffold_172704 (10785-10574) | |
| 784-987, gnl|panTro1|chr5 (125692109-125692319) | |
| 784-987, gnl|rheMac2|chr4 (141138161-141137951) | |
| 784-987, gnl|rn3|chr20 (36855412-36855621) | |
| 784-987, gnl|tetNig1|chrUn_random (90001479-90001308) | |
| 784-987, gnl|xenTro1|scaffold_259 (1352706-1352931) | |
| 1079-1640, gnl|bosTau2|chr9 (14472877-14472320) | |
| 1079-1640, gnl|Hg17|chr6 (123171922-123172470) | |
| 1079-1640, gnl|Mm7|chr10 (57632663-57633184) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 159-374, gnl|bosTau2|chr9 (14483908-14483693) | |
| 159-374, gnl|canFam2|chr1 (65153694-65153895) | |
| 159-374, gnl|danRer3|chr20 (47696112-47695914) | |
| 159-374, gnl|echTel1|scaffold_224655 (4713-4511) | |
| 159-374, gnl|fr1|chrUn (281979893-281980091) | |
| 159-374, gnl|galGal2|chr3 (59661731-59661530) | |
| 159-374, gnl|hg17|chr6 (123158515-123158717) | |
| 159-374, gnl|Hg17|chr6 (123158520-123158735) | |
| 159-374, gnl|mm7|chr10 (57622360-57622562) | |
| 159-374, gnl|Mm7|chr10 (57622365-57622580) | |
| 159-374, gnl|monDom2|scaffold_0 (92284776-92284575) | |
| 159-374, gnl|panTro1|chr5 (125682873-125683075) | |
| 159-374, gnl|rheMac2|chr4 (141147363-141147161) | |
| 159-374, gnl|rn3|chr20 (36848662-36848864) | |
| 159-374, gnl|tetNig1|chrUn_random (90002526-90002348) | |
| 159-374, gnl|xenTro1|scaffold_259 (1340123-1340332) | |
| 516-617, gnl|bosTau2|chr9 (14477535-14477434) | |
| 516-617, gnl|canFam2|chr1 (65159542-65159681) | |
| 516-617, gnl|danRer3|chr20 (47693756-47693628) | |
| 516-617, gnl|dasNov1|scaffold_106714 (5654-5515) | |
| 516-617, gnl|echTel1|scaffold_172415 (3259-3120) | |
| 516-617, gnl|galGal2|chr3 (59657873-59657745) | |
| 516-617, gnl|hg17|chr6 (123164122-123164261) | |
| 516-617, gnl|Hg17|chr6 (123164151-123164252) | |
| 516-617, gnl|loxAfr1|scaffold_1976 (8374-8513) | |
| 516-617, gnl|mm7|chr10 (57626990-57627129) | |
| 516-617, gnl|Mm7|chr10 (57627019-57627120) | |
| 516-617, gnl|monDom2|scaffold_0 (92279112-92278975) | |
| 516-617, gnl|oryCun1|scaffold_172704 (14083-13947) | |
| 516-617, gnl|panTro1|chr5 (125688510-125688649) | |
| 516-617, gnl|rheMac2|chr4 (141141774-141141635) | |
| 516-617, gnl|rn3|chr20 (36850940-36851079) | |
| 516-617, gnl|xenTro1|scaffold_259 (1346971-1347079) | |
| 784-987, gnl|bosTau2|chr9 (14475969-14475766) | |
| 784-987, gnl|canFam2|chr1 (65161039-65161249) | |
| 784-987, gnl|danRer3|chr20 (47691116-47690910) | |
| 784-987, gnl|dasNov1|scaffold_106714 (2330-2120) | |
| 784-987, gnl|echTel1|scaffold_321356 (10617-10411) | |
| 784-987, gnl|fr1|chrUn (281981052-281981241) | |
| 784-987, gnl|galGal2|chr3 (59655266-59655057) | |
| 784-987, gnl|hg17|chr6 (123167728-123167938) | |
| 784-987, gnl|Hg17|chr6 (123167751-123167954) | |
| 784-987, gnl|loxAfr1|scaffold_1976 (11706-11913) | |
| 784-987, gnl|mm7|chr10 (57629317-57629517) | |
| 784-987, gnl|Mm7|chr10 (57629330-57629523) | |
| 784-987, gnl|monDom2|scaffold_0 (92267726-92267515) | |
| 784-987, gnl|oryCun1|scaffold_172704 (10785-10574) | |
| 784-987, gnl|panTro1|chr5 (125692109-125692319) | |
| 784-987, gnl|rheMac2|chr4 (141138161-141137951) | |
| 784-987, gnl|rn3|chr20 (36855412-36855621) | |
| 784-987, gnl|tetNig1|chrUn_random (90001479-90001308) | |
| 784-987, gnl|xenTro1|scaffold_259 (1352706-1352931) | |
| 1079-1640, gnl|bosTau2|chr9 (14472877-14472320) | |
| 1079-1640, gnl|Hg17|chr6 (123171922-123172470) | |
| 1079-1640, gnl|Mm7|chr10 (57632663-57633184) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| kid (2.2055) | |
| lin (0.873617) | |
| lyg (0.798616) | |
| nje (0.66368) | |
| bfe (0.449573) | |
| pla (0.401016) | |
| ute (0.398353) | |
| sag (0.36543) | |
| mga (0.32041) | |
| liv (0.292569) | |
| thg (0.253582) | |
| mgp (0.230681) | |
| eje (0.197668) | |
| nep (0.183925) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| ova (0.129132) | |
| ret (0.128733) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (2.2055) | |
| lin (0.873617) | |
| lyg (0.798616) | |
| nje (0.66368) | |
| bfe (0.449573) | |
| pla (0.401016) | |
| ute (0.398353) | |
| sag (0.36543) | |
| mga (0.32041) | |
| liv (0.292569) | |
| thg (0.253582) | |
| mgp (0.230681) | |
| eje (0.197668) | |
| nep (0.183925) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| ova (0.129132) | |
| ret (0.128733) | |
| cty (0.10408) | |
| jej (0.0989218) |