Non-Coding RNA Search

Ss1.1-Pig4-TMW8051L05.5

Sequence:


               
               GAAAACACAGCAACCTCCCTACCAAAAAGACAGAGCCCCACCCCCTCACACAAACACACA
TGTCCTGTTGAACACATGCACGCACACCCACGTGCCTCTACTTACCCCCCAGACTGGGGG
AGAAGAGACAGAGAGCCCCCAGCGATACTCCACGTGGATTCCTATATGTGGCTATCGCAT
CTGTACAGGCTTGTCTGCAAGCAGGAGGACTCATGTCAAGCACTTGGGGGCTTGTGGGGC
TCTGGGGATAAAAGGGGGCAATGGGGAAGCTCAGCCTCCCCCCCATCTCTGCCACCCATT
GATGGGCAACCGTGGGCCCATGGAATGGAAGCCCCCAGATTATTCACAGGTTCTGCAAAG
GGGCGGGCCAGGGAGACAGACTAGGAGAATCTTCCTTTGTGCTTGTGTCTCTTCATCCTT
CTGGGACCTTCACCTCCTTCTTGTCCCCTCCTATCCTGGTCCTTATGTCTGTCCCTGATA
AAGGCATTGTTTTCCTTTCCTCCCCACCCTATCCTCTCCACCAAATTGTTCCCAATGTCA
AGATCCAAAGGCTGGAGCTTTTGGCTTCAGGAGCGAGATGAGGAGGCCTAGCTTAGGCCA
GCAGGTTTAAAGAGCAGACCAGACAAGAAAGAGTCCATTTCCCTTTCCTTGGGAGTGGGC
AGTGGGGTAGCTGACAGTCTTGGCCAACCAGGGGCCTGTTGCCCAGGCAACTCACCAGCT
CCGCCTCTGTTGATTGGCTGCCATGGTGGAAGTCAGCCAAGATTTAAAGGGACGCCAGTG
ATTGCTCTTTTGAAAATCTACCAGTCCCATTGTAGGTGGAGAAATAAATGGTCTTTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAACACAGCAACCTCCCTACCAAAAAGACAGAGCCCCACCCCCTCACACAAACACACA
TGTCCTGTTGAACACATGCACGCACACCCACGTGCCTCTACTTACCCCCCAGACTGGGGG
AGAAGAGACAGAGAGCCCCCAGCGATACTCCACGTGGATTCCTATATGTGGCTATCGCAT
CTGTACAGGCTTGTCTGCAAGCAGGAGGACTCATGTCAAGCACTTGGGGGCTTGTGGGGC
TCTGGGGATAAAAGGGGGCAATGGGGAAGCTCAGCCTCCCCCCCATCTCTGCCACCCATT
GATGGGCAACCGTGGGCCCATGGAATGGAAGCCCCCAGATTATTCACAGGTTCTGCAAAG
GGGCGGGCCAGGGAGACAGACTAGGAGAATCTTCCTTTGTGCTTGTGTCTCTTCATCCTT
CTGGGACCTTCACCTCCTTCTTGTCCCCTCCTATCCTGGTCCTTATGTCTGTCCCTGATA
AAGGCATTGTTTTCCTTTCCTCCCCACCCTATCCTCTCCACCAAATTGTTCCCAATGTCA
AGATCCAAAGGCTGGAGCTTTTGGCTTCAGGAGCGAGATGAGGAGGCCTAGCTTAGGCCA
GCAGGTTTAAAGAGCAGACCAGACAAGAAAGAGTCCATTTCCCTTTCCTTGGGAGTGGGC
AGTGGGGTAGCTGACAGTCTTGGCCAACCAGGGGCCTGTTGCCCAGGCAACTCACCAGCT
CCGCCTCTGTTGATTGGCTGCCATGGTGGAAGTCAGCCAAGATTTAAAGGGACGCCAGTG
ATTGCTCTTTTGAAAATCTACCAGTCCCATTGTAGGTGGAGAAATAAATGGTCTTTCTCC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               72-182, - strand, RNAz p=0.574427
               

               
               509-626, - strand, RNAz p=0.761391
               

               
               666-840, - strand, RNAz p=0.9042

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               72-182, - strand, RNAz p=0.574427
               

               
               509-626, - strand, RNAz p=0.761391
               

               
               666-840, - strand, RNAz p=0.9042

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               746-879, - strand, RNAmicro p=0.997196

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               746-879, - strand, RNAmicro p=0.997196

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-840, gnl|bosTau2|chr17 (37905883-37905061)
               

               
               1-840, gnl|Hg17|chr12 (111997688-111998548)
               

               
               1-840, gnl|Mm7|chr5 (119915046-119914191)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr17 (37905883-37905061)
               

               
               1-840, gnl|Hg17|chr12 (111997688-111998548)
               

               
               1-840, gnl|Mm7|chr5 (119915046-119914191)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               ecc (0.115035)

	72-182, - strand, RNAz p=0.574427
	509-626, - strand, RNAz p=0.761391
	666-840, - strand, RNAz p=0.9042

	1-840, gnl\|bosTau2\|chr17 (37905883-37905061)
	1-840, gnl\|Hg17\|chr12 (111997688-111998548)
	1-840, gnl\|Mm7\|chr5 (119915046-119914191)