Non-Coding RNA Search

Ss1.1-Pig4-TMW8051L16.5.5

Sequence:


               
               CCGTCAGAAGCCCAGCGATGCACTTGGGCGTCTTTCTCCTTTTGTTCGGCTTTCGGTAAC
CACGCGGTCACCTGGGGGACGCCCAGGGCTCCCCAATACTTGCGACTCTAAGACCAGGTC
TTAGAGGAGCCCAAGGGACAGGGACAGAAAGGACAGGTCCTGAGGGTTGGGCCTTCGTTC
AGGGGTAGGAAAAGGGTTCCTTTCAGCAAACCCCAGGGTTGACCACACTCCAGCCTCCGG
GAGCGGCTCAGTTAACCCTGGTTGGCAAGAGACCACCAGCCAGCGAACGCCAGGAACAAA
CAGGGGAAGAGGAAGTGGCTTCCGATTCGAGCAAGCGAGCCTGAATTCTCTTTCACTCTT
TCTTCCCCAGCCGTGGGCATCTGGGCACTGCTCCATCAGCACCTCCGGGGGTGGGGTGGG
GGGGGGCCCATCCTCGCATGCTCCTCGGTTGAGAGAAGACCATCTTGGCTGATGACAGTG
AAGCCAGGAGGCCAAAAGGCGAGTAGAGTCAGGGCCTCACCTGTGTCCCTGCAAACCAGC
AGGGGCGCGGTCCCTACGGGCCGTCCCAGTGGCCCCACCAAAGGCTCCTCTGTCAGTGGG
GTGGCCAGATGTCTCCAGGAACTTCTGAATTTCACCAAGTCAAGCTGCCCACTCTCCACT
CCACAAGGATGCTAAATGTTTTGTTTTTTTTTTAAAAAATCTGATTTTGAACCTCGGTAA
TGCATGTGCATTGCGTCTTTCCTATTAGGGGCCAGGATAGATTAATGTTTTCCAACATAG
AGGAAAAGATATAAGCTGCAGTAATTTGTTCTTTTTGGTGTCCATTAAACCCAATATAGA
GTATGCTGGTATCCTCTTGTGTTCCCTGTGCCTTTTTTTTTTTTTTTTTCTCTCCTGTAC
CACTTGCGTCCAAAAAGGAATGGATAACAAGTGCTTTTCAATGTTAACTTTGGTAACTTC
TCCACCGTCTGTGTGGCAATGGGGAGAGGGCAGGCCTGTATCAGCTGAGCTTATTAGAGG
AAATAAGTTATTATAGGATAGTTGAGATATTACCATTTTCTCTGGGAATCCTACTGTGAA
ATCATCTATATATTATTACGGAGCAGTTCACTTAGAGTAGAACCTGGAATTTCTCACGTG
CTTCTCAGCCCTCCCTCGTCTCCGCTGCCCGTCATTTCTCCTCCGATGCTAGAACATTGT
TGTAAGAATGACTCATTTTTTTGAAGAAGCTGCCCTTAAAATAACTTAAAAAAAAAGAGA
GAGAGAGAGAGGAACTTGTCATTTACCCAATTTTTCCTTTGCAGGATGGAAAGCAAGAAA
AAGGCATGGGAAGTTGTAATGGGATTTTTTTCCTTTGGGTTTTTATCAGATCATCTTGAA
GCTTTCAGGTTGTTAGACAGAGGAGCCTGTCTCCCAGCGGTAGCGCGGAGGCCTCTAAGG
CCGTTTGGTCACATCTGTAATTACTGAGGAAAAGTTAACCGAACATGAAAAAGTTATGCT
GATGTTAAGTATTTTCCCAGAGAAGTCGATTTCACGCTTCCTAATGGCTCTGCCTCCTGT
GCTTCTGTCATCAGAAAACCTCTTGAAGAAGTGATCCAAATTTCTGTTTTAACCTGATCT
TGGGCAACCGCTAAACTTCAGGGTTTATTTGTGTGTATGGCACGAATTCTACACTTTGGA
GGCATTTCGGTGTTGTGATGGCCCATTGCCGTTGTAAAGGTTCTGGAATGGCCCCTGTGT
CTCTGGAGATGGAATTAAACCAAATAAAGTGCTTCCATTGGAAGGCTTCTATTGACCTTG
TAACTATCTGTTAATCCTCTAAATGTTAAATAAAAGTATAACTTCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGTCAGAAGCCCAGCGATGCACTTGGGCGTCTTTCTCCTTTTGTTCGGCTTTCGGTAAC
CACGCGGTCACCTGGGGGACGCCCAGGGCTCCCCAATACTTGCGACTCTAAGACCAGGTC
TTAGAGGAGCCCAAGGGACAGGGACAGAAAGGACAGGTCCTGAGGGTTGGGCCTTCGTTC
AGGGGTAGGAAAAGGGTTCCTTTCAGCAAACCCCAGGGTTGACCACACTCCAGCCTCCGG
GAGCGGCTCAGTTAACCCTGGTTGGCAAGAGACCACCAGCCAGCGAACGCCAGGAACAAA
CAGGGGAAGAGGAAGTGGCTTCCGATTCGAGCAAGCGAGCCTGAATTCTCTTTCACTCTT
TCTTCCCCAGCCGTGGGCATCTGGGCACTGCTCCATCAGCACCTCCGGGGGTGGGGTGGG
GGGGGGCCCATCCTCGCATGCTCCTCGGTTGAGAGAAGACCATCTTGGCTGATGACAGTG
AAGCCAGGAGGCCAAAAGGCGAGTAGAGTCAGGGCCTCACCTGTGTCCCTGCAAACCAGC
AGGGGCGCGGTCCCTACGGGCCGTCCCAGTGGCCCCACCAAAGGCTCCTCTGTCAGTGGG
GTGGCCAGATGTCTCCAGGAACTTCTGAATTTCACCAAGTCAAGCTGCCCACTCTCCACT
CCACAAGGATGCTAAATGTTTTGTTTTTTTTTTAAAAAATCTGATTTTGAACCTCGGTAA
TGCATGTGCATTGCGTCTTTCCTATTAGGGGCCAGGATAGATTAATGTTTTCCAACATAG
AGGAAAAGATATAAGCTGCAGTAATTTGTTCTTTTTGGTGTCCATTAAACCCAATATAGA
GTATGCTGGTATCCTCTTGTGTTCCCTGTGCCTTTTTTTTTTTTTTTTTCTCTCCTGTAC
CACTTGCGTCCAAAAAGGAATGGATAACAAGTGCTTTTCAATGTTAACTTTGGTAACTTC
TCCACCGTCTGTGTGGCAATGGGGAGAGGGCAGGCCTGTATCAGCTGAGCTTATTAGAGG
AAATAAGTTATTATAGGATAGTTGAGATATTACCATTTTCTCTGGGAATCCTACTGTGAA
ATCATCTATATATTATTACGGAGCAGTTCACTTAGAGTAGAACCTGGAATTTCTCACGTG
CTTCTCAGCCCTCCCTCGTCTCCGCTGCCCGTCATTTCTCCTCCGATGCTAGAACATTGT
TGTAAGAATGACTCATTTTTTTGAAGAAGCTGCCCTTAAAATAACTTAAAAAAAAAGAGA
GAGAGAGAGAGGAACTTGTCATTTACCCAATTTTTCCTTTGCAGGATGGAAAGCAAGAAA
AAGGCATGGGAAGTTGTAATGGGATTTTTTTCCTTTGGGTTTTTATCAGATCATCTTGAA
GCTTTCAGGTTGTTAGACAGAGGAGCCTGTCTCCCAGCGGTAGCGCGGAGGCCTCTAAGG
CCGTTTGGTCACATCTGTAATTACTGAGGAAAAGTTAACCGAACATGAAAAAGTTATGCT
GATGTTAAGTATTTTCCCAGAGAAGTCGATTTCACGCTTCCTAATGGCTCTGCCTCCTGT
GCTTCTGTCATCAGAAAACCTCTTGAAGAAGTGATCCAAATTTCTGTTTTAACCTGATCT
TGGGCAACCGCTAAACTTCAGGGTTTATTTGTGTGTATGGCACGAATTCTACACTTTGGA
GGCATTTCGGTGTTGTGATGGCCCATTGCCGTTGTAAAGGTTCTGGAATGGCCCCTGTGT
CTCTGGAGATGGAATTAAACCAAATAAAGTGCTTCCATTGGAAGGCTTCTATTGACCTTG
TAACTATCTGTTAATCCTCTAAATGTTAAATAAAAGTATAACTTCTGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               457-616, + strand, RNAz p=0.700767

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               457-616, + strand, RNAz p=0.700767

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015033, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015033, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1848, gnl|bosTau2|chr11 (80489353-80487532)
               

               
               1-1848, gnl|Hg17|chr9 (129730822-129729019)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1848, gnl|bosTau2|chr11 (80489353-80487532)
               

               
               1-1848, gnl|Hg17|chr9 (129730822-129729019)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               fce (0.543183)
               

               
               hea (0.408998)
               

               
               fhi (0.339155)
               

               
               spl (0.286369)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               hea (0.408998)
               

               
               fhi (0.339155)
               

               
               spl (0.286369)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	1-1848, gnl\|bosTau2\|chr11 (80489353-80487532)
	1-1848, gnl\|Hg17\|chr9 (129730822-129729019)

	fce (0.543183)
	hea (0.408998)
	fhi (0.339155)
	spl (0.286369)
	fcc (0.197785)
	nlu (0.191681)
	fty (0.17584)
	fbs (0.175346)
	csp (0.161186)
	lun (0.150489)
	lnt (0.142308)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	cly (0.120642)
	ecc (0.115035)
	jca (0.11396)
	nbm (0.0993246)
	ldo (0.0970026)