Non-Coding RNA Search

Ss1.1-Pig4-TMW8051L17.3

Sequence:


               
               CGTGGCGCTGGGAAGCCTTCCTCAGGGGGTCCCAGTACTCCTAGTGGTGCTAAGACGAGA
GGGAGAAGAACACAAGGTGGAAGAGTGGTGGAGTCCCGGTACTTGCAATATGAGAAGGAA
GCCACCAAAAAGGCTCCTGCAGCAGATACGTTAAAGAACAGTGGGAAGATGCCTGAAGGT
GGAAGAAAACCCAGCCTCCTCCAGAAGAGCAAAGATAGCAGTGGAATTGGCAAGGGTGAC
CTGCAGTCCACCTTGCTGGAAGGGCATGGCACTGCCCCGCCTGACCTGGATCTCTCGGCC
ATTAATGACAAAAGTATGGTTCGAAAGACTCCACAATTAGAAAAAACGATGTTACAGAAA
ACTGAGTCTTCATCATTTTCTGCCTTGAAGAAAAAGAGCCCAGATCTTTCCCAAGCGATG
GAAATGGTGGAATCCCAGACACTGCTCCTGAGTCTACTGGCCTTGAAGATGGAGAATGGT
CTTGCAGCATTCGAAGAAAAGGCAGAGAAGAATCTATTACTAATGTGCAAAGAGAAGGAG
AAGCTACAGAAAAAGACCCATGAGCTGAAGCGCAAACTTCTCCTCTGTCAGAGGAAGCGG
GAGCTGACGGATGTCCTAGACGCTCAGATCGAGATGCTCAGCCCCTTTGAGGCCGTGGCC
AGCCGCTTCAAGGAGCAGTACAAGACGTTTGCCACTGCCCTGGACACGACGAGGCACGAA
CTGCCCATGAGATCGATCCACCTGAAAGATGGAGACGGGCAGCGGCTCTTGGATGAATTG
CAGCCAGAATTGATGACCACGCGCCATCTGCTGGGAGAACTTGGCATCGGCAGCTCAGAG
GAAAACATGAAGGCTTTGGACCTGCTGAACGAACTCAAGGAAGTGACCCAGATGAAGGAT
CTGGAGCTCCGAAGGAGCTTTGCCCAGGTTCTGGAACTCTCCGCCCAGGCAAGTAAAGAA
GCAGCCTTAATCAACCAGGAGGTCTGGGAAGAGGCCCAGGGCTCCAAGGCCTCCAGCCAG
TGGTATTTCAATCCCGAAGAGGCCACTGGTGGGGAAACTCGGGGTGAGCCTGGGAGCCTC
CTCCTCCCGGGCCACGATGAGCTGTGAATCTACCTGCAAGCCAGGTCTCCCTGGGAATGG
GTGGTGGGGGGAGCCCATGCTCTGCCTCCTGTTGGGGGTGGGGGTGGGGAACCTGCAGTG
ACCCACGTGTAATATTCTGGAAACTTAAGCACTTTATGTACTTAGTCTAGTTGTATAGCT
GTTTTTGTATGATAATCTCTTTTGCTATTTAACAAAACAGTTTTGCAATTGAACCTTGGT
AATTTAACAAATAAAACTATTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGGCGCTGGGAAGCCTTCCTCAGGGGGTCCCAGTACTCCTAGTGGTGCTAAGACGAGA
GGGAGAAGAACACAAGGTGGAAGAGTGGTGGAGTCCCGGTACTTGCAATATGAGAAGGAA
GCCACCAAAAAGGCTCCTGCAGCAGATACGTTAAAGAACAGTGGGAAGATGCCTGAAGGT
GGAAGAAAACCCAGCCTCCTCCAGAAGAGCAAAGATAGCAGTGGAATTGGCAAGGGTGAC
CTGCAGTCCACCTTGCTGGAAGGGCATGGCACTGCCCCGCCTGACCTGGATCTCTCGGCC
ATTAATGACAAAAGTATGGTTCGAAAGACTCCACAATTAGAAAAAACGATGTTACAGAAA
ACTGAGTCTTCATCATTTTCTGCCTTGAAGAAAAAGAGCCCAGATCTTTCCCAAGCGATG
GAAATGGTGGAATCCCAGACACTGCTCCTGAGTCTACTGGCCTTGAAGATGGAGAATGGT
CTTGCAGCATTCGAAGAAAAGGCAGAGAAGAATCTATTACTAATGTGCAAAGAGAAGGAG
AAGCTACAGAAAAAGACCCATGAGCTGAAGCGCAAACTTCTCCTCTGTCAGAGGAAGCGG
GAGCTGACGGATGTCCTAGACGCTCAGATCGAGATGCTCAGCCCCTTTGAGGCCGTGGCC
AGCCGCTTCAAGGAGCAGTACAAGACGTTTGCCACTGCCCTGGACACGACGAGGCACGAA
CTGCCCATGAGATCGATCCACCTGAAAGATGGAGACGGGCAGCGGCTCTTGGATGAATTG
CAGCCAGAATTGATGACCACGCGCCATCTGCTGGGAGAACTTGGCATCGGCAGCTCAGAG
GAAAACATGAAGGCTTTGGACCTGCTGAACGAACTCAAGGAAGTGACCCAGATGAAGGAT
CTGGAGCTCCGAAGGAGCTTTGCCCAGGTTCTGGAACTCTCCGCCCAGGCAAGTAAAGAA
GCAGCCTTAATCAACCAGGAGGTCTGGGAAGAGGCCCAGGGCTCCAAGGCCTCCAGCCAG
TGGTATTTCAATCCCGAAGAGGCCACTGGTGGGGAAACTCGGGGTGAGCCTGGGAGCCTC
CTCCTCCCGGGCCACGATGAGCTGTGAATCTACCTGCAAGCCAGGTCTCCCTGGGAATGG
GTGGTGGGGGGAGCCCATGCTCTGCCTCCTGTTGGGGGTGGGGGTGGGGAACCTGCAGTG
ACCCACGTGTAATATTCTGGAAACTTAAGCACTTTATGTACTTAGTCTAGTTGTATAGCT
GTTTTTGTATGATAATCTCTTTTGCTATTTAACAAAACAGTTTTGCAATTGAACCTTGGT
AATTTAACAAATAAAACTATTCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|58761506|ref|NP_001011699.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|58761506|ref|NP_001011699.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               895-1091, - strand, RNAz p=0.999591

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               895-1091, - strand, RNAz p=0.999591

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               384-886, gnl|bosTau2|chr5 (2355444-2354952)
               

               
               384-886, gnl|Hg17|chr19 (17030686-17024656)
               


               
               888-1296, gnl|bosTau2|chr5 (2354977-2354556)
               

               
               888-1296, gnl|Hg17|chr19 (17024688-17021593)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               384-886, gnl|bosTau2|chr5 (2355444-2354952)
               

               
               384-886, gnl|Hg17|chr19 (17030686-17024656)
               


               
               888-1296, gnl|bosTau2|chr5 (2354977-2354556)
               

               
               888-1296, gnl|Hg17|chr19 (17024688-17021593)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fbs (0.175346)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               med (0.116252)

	384-886, gnl\|bosTau2\|chr5 (2355444-2354952)
	384-886, gnl\|Hg17\|chr19 (17030686-17024656)

	888-1296, gnl\|bosTau2\|chr5 (2354977-2354556)
	888-1296, gnl\|Hg17\|chr19 (17024688-17021593)