Non-Coding RNA Search

Ss1.1-Pig4-TMW8051L19.5

Sequence:


               
               AGTCGCGAGCGCCGGGTCCCGAACCTGAAGGCCGAGGACGTTGCTGAGGCGGCTCATCCT
CCGACAGCTCCCGGACCAGGAGACGCCTGACCCCGAACGGTCTCCCAGGACGCGCCACGC
AGCCCGGTACAAAATTCAGCCGCCTGCACGTCCCCTCTCAAGGTCCAGACCGCTGCTGTA
GGTGGTTGGGATGGCAGCGACTGTGGTGCTGGAGCCTGCGGGTCGCTGTCGCTGGAACGA
GCCGGTGCGCATCGCTGTGCGCGGCCTGGCTCCGGGGCAGCGGGTCACGCTGCGCGCGTC
CCTGCGCGACGAGAAGGGCGCGCTCTTCAGGGCCCACGCGCGCTACTGCGCCGACGCCGA
CGCCCAGCTGGACCTGGCGCGCGCACCCGCGCTGGGCGGCAGCTTCGTGGGGCTTGAGCC
CATGGGGCTCCTCTGGGCTCTGGAGCCCGAAAAGCCTTTTTGGCGGTTTGTGAAGCGGGA
CGTGCAGACGCCCTTCGCCGTGAAGCTGGAGGTGTTCGACGGCCACGAGCCCGAGCCTCA
GGCGGAGCAGCTCCTGGGCGTGGCAGTGCACGAGCGCGACTTCCTGCCGCCCGGGGTTCG
GCGGGAGCCGGTGCGCGCGGGCCGGGTGCGCGCCACGCTCTTCCTACCTCCAGGTGAGCC
TGGGGTGCTTGGGGCGCGCTCATGTGTTCCCTAGGCCCCGCGTGGTTTTGGATACTGCTT
CCCGGGGTGTTAGGCTCTGGAGCATGATCACGGAAGCAGGTCCTAACTAAATCAGTTGCC
TCACAGCAGCAATAGAGGCTTTTGATACGTTAGCCTCTGTGCTATGCGTTTTGTTTGCAT
TACCTCATTTACTTTTTATAATATCCCAAAGAAGTGGGCACTGTTATGAAGATAAGAAAA
GACTGGATTTGGGGCGGTAGATTCACTTTGTTATCAATAACTACCCTACAGATCTCTGCA
GGTATCAGCCAGTCGCTGCTGCACTAAATGATGATGGCTAAGGAATCTATTGCTATTATC
TCCCTATGTAGTGTCCTGATTAGATTGGGCCCCTTATTCACTTATGTTCCTGTCTACCAC
AGATCACTTTTCAGACTTCACTGCCTTCCTCACTTAAAGCCTTGTCTGGTATTTCCTTTG
CTTTAAGTAGTCACCTGAACCAAAAATAACACCAAGAGTTGGTGCAACATAATATAAAAC
TTTGTTTCAGGATTGTAATTTCTGTGTCCAACACTGAGAATCAACACTGTCTAAAACGTG
AAATTCCTCCTTTTATGAGGTAGTCAGTCCTTAGACTTAGATGCTCTCACTTACAGATTC
ATAGGGAGTTACCCCTGTGGAGCAGCAGGTTAAAGATCTGATGGTGTCTCTGCAGTGCTT
GGGTTGCAGCTGAGGCTTGAGCTCGATAGCTAGCCTGGGAACTTACAAATGCTGCAGGTG
CAGCCCCCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCGCGAGCGCCGGGTCCCGAACCTGAAGGCCGAGGACGTTGCTGAGGCGGCTCATCCT
CCGACAGCTCCCGGACCAGGAGACGCCTGACCCCGAACGGTCTCCCAGGACGCGCCACGC
AGCCCGGTACAAAATTCAGCCGCCTGCACGTCCCCTCTCAAGGTCCAGACCGCTGCTGTA
GGTGGTTGGGATGGCAGCGACTGTGGTGCTGGAGCCTGCGGGTCGCTGTCGCTGGAACGA
GCCGGTGCGCATCGCTGTGCGCGGCCTGGCTCCGGGGCAGCGGGTCACGCTGCGCGCGTC
CCTGCGCGACGAGAAGGGCGCGCTCTTCAGGGCCCACGCGCGCTACTGCGCCGACGCCGA
CGCCCAGCTGGACCTGGCGCGCGCACCCGCGCTGGGCGGCAGCTTCGTGGGGCTTGAGCC
CATGGGGCTCCTCTGGGCTCTGGAGCCCGAAAAGCCTTTTTGGCGGTTTGTGAAGCGGGA
CGTGCAGACGCCCTTCGCCGTGAAGCTGGAGGTGTTCGACGGCCACGAGCCCGAGCCTCA
GGCGGAGCAGCTCCTGGGCGTGGCAGTGCACGAGCGCGACTTCCTGCCGCCCGGGGTTCG
GCGGGAGCCGGTGCGCGCGGGCCGGGTGCGCGCCACGCTCTTCCTACCTCCAGGTGAGCC
TGGGGTGCTTGGGGCGCGCTCATGTGTTCCCTAGGCCCCGCGTGGTTTTGGATACTGCTT
CCCGGGGTGTTAGGCTCTGGAGCATGATCACGGAAGCAGGTCCTAACTAAATCAGTTGCC
TCACAGCAGCAATAGAGGCTTTTGATACGTTAGCCTCTGTGCTATGCGTTTTGTTTGCAT
TACCTCATTTACTTTTTATAATATCCCAAAGAAGTGGGCACTGTTATGAAGATAAGAAAA
GACTGGATTTGGGGCGGTAGATTCACTTTGTTATCAATAACTACCCTACAGATCTCTGCA
GGTATCAGCCAGTCGCTGCTGCACTAAATGATGATGGCTAAGGAATCTATTGCTATTATC
TCCCTATGTAGTGTCCTGATTAGATTGGGCCCCTTATTCACTTATGTTCCTGTCTACCAC
AGATCACTTTTCAGACTTCACTGCCTTCCTCACTTAAAGCCTTGTCTGGTATTTCCTTTG
CTTTAAGTAGTCACCTGAACCAAAAATAACACCAAGAGTTGGTGCAACATAATATAAAAC
TTTGTTTCAGGATTGTAATTTCTGTGTCCAACACTGAGAATCAACACTGTCTAAAACGTG
AAATTCCTCCTTTTATGAGGTAGTCAGTCCTTAGACTTAGATGCTCTCACTTACAGATTC
ATAGGGAGTTACCCCTGTGGAGCAGCAGGTTAAAGATCTGATGGTGTCTCTGCAGTGCTT
GGGTTGCAGCTGAGGCTTGAGCTCGATAGCTAGCCTGGGAACTTACAAATGCTGCAGGTG
CAGCCCCCCCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61818415|ref|XP_590079.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61818415|ref|XP_590079.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               167-286, + strand, RNAz p=0.998629
               

               
               354-513, - strand, RNAz p=0.584545

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               167-286, + strand, RNAz p=0.998629
               

               
               354-513, - strand, RNAz p=0.584545

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_152331, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_152331, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               5-955, gnl|bosTau2|chr10 (60344298-60345256)
               

               
               5-955, gnl|Hg17|chr14 (73128247-73129495)
               


               
               14-942, gnl|bosTau2|chr10 (60196135-60197063)
               

               
               14-942, gnl|Hg17|chr14 (73128256-73129025)
               


               
               982-1284, gnl|bosTau2|chr10 (60199558-60199869)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-955, gnl|bosTau2|chr10 (60344298-60345256)
               

               
               5-955, gnl|Hg17|chr14 (73128247-73129495)
               


               
               14-942, gnl|bosTau2|chr10 (60196135-60197063)
               

               
               14-942, gnl|Hg17|chr14 (73128256-73129025)
               


               
               982-1284, gnl|bosTau2|chr10 (60199558-60199869)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	167-286, + strand, RNAz p=0.998629
	354-513, - strand, RNAz p=0.584545

	5-955, gnl\|bosTau2\|chr10 (60344298-60345256)
	5-955, gnl\|Hg17\|chr14 (73128247-73129495)

	14-942, gnl\|bosTau2\|chr10 (60196135-60197063)
	14-942, gnl\|Hg17\|chr14 (73128256-73129025)

	982-1284, gnl\|bosTau2\|chr10 (60199558-60199869)