Ss1.1-Pig4-TMW8051L24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCCGGGAGTGTGTGGTTGCAGAAGGAGCTTGATCCCTGTGTGTGCCCAGTGTCCGCCA GCCGGGACCTTCGGCTTCCGCGGACCTTAGGGGACCCTTGGCGGCAGCTCCCGGCCTACT TCCCGCGCACGGCCATGTCTGGTAACGGCAACGCAGCCGCAACGGCGGAAGAAAATAGCC CAAAGATGAGAGTGATTCGTGTGGGTACCCGCAAAAGCCAGCTGGCCCGCATACAAACGG ACAGTGTGGTGGCAACGCTGAAAGCCTTATACCCAGGCCTGCAGTTTGAAATCATTGCTA TGTCCACCACAGGGGACAAGATTCTCGACACTGCACTTTCTAAGATTGGAGAGAAGAGCC TGTTTACCAAGGAGCTGGAACACGCGCTGGAGAGGAATGAAGTGGACCTGGTTGTTCATT CCCTCAAGGACCTGCCCACGGTGCTTCCTCCTGGCTTCACCATTGGAGCCGTCTGCAAGC GAGAGTGCCCCTATGATGCTGTTGTCTTTCACCCCAAATTTGTCGGGAAGACCCTAGAAA CCTTGCCAGAGAAGAGTGTGGTAGGAACCAGCTCCCTGCGGAGAGCGGCCCAGCTTCAGA GAAAGTTCCCACATCTGGAGTTCAAGAGTATTCGGGGAAACCTCAACACACGGCTTCGGA AGCTGGATGAGCTGCAGGAGTTCAGTGCCATCATCCTGGCTGCAGCTGGCCTGCAGCGCA TGGGGTGGCAGAACCGGGTGGGACAGATCCTGCACCCTGAGGAGTGTATGTATGCTGTGG GTCAGGGGGCCCTGGGCGTGGAAGTCCGAGCCAAGGACCAGGACATCCTGGATCTGGTGG GTGTGTTGCATGATCCTGAGACTCTGCTTCGCTGCATTGCTGAACGCGCCTTCCTGAGGC ACCTGGAAGGAGGCTGCAGTGTGCCAGTAGCAGTGCATACAGCTATGAAGGATGGGCAAC TCTACCTGACTGGAGGAGTCTGGAGTCTGAATGGTGCAGAGAGCATGCAAGAGACTATGC AGGCCACCATCCATGTCCCTGCTCAGCACGAAGATGGCCCTGAGGATGACCCACAGCTTG TGGGCATCACTGCCCGGAATATTCCTCGAGAAGCCCAACTGGCTGCTGAGAACCTGGGCA TCAGCCTGGCCACCTTGCTGCTGAACAAAGGTGCCAAGAACATCCTGGATGTTGCACGGC AACTCAATGATGCCCACTAACTGGTCTGCGGGGCACAGGTGCCTGGGTTACTGCTGCCCA GGGCCTCAGTGCCCCATTCTCACTGCTATTCAGGGAGTGATTACCCCAGGAGATTGAACT GCAGGGGCAGACACTTCCAGAATCTTGTCTCACTTTGGGGCCTTGTTGACTGCCTTGCCT CCTCAGTACGTTGGGGCTTCACTTCTAGAGAAAATCCTCTAATTAAGCCACAGCCTTTGA ATGTAACCATCTCTACTAATAAACCAGATTTGAACTAGATTTTGATTCTAGCGGGGTTGC AGGAAAGGTAACACACACAAAACCTTTTATTCCATACCTCAGAGGCTGGGACCCTTGTCC AGGTTCTTCTGGAACATGCTGTTTCAGTCTCAATACTTCTCATTTTCCAACGGAATAAAT TGTCTCCCAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCCGGGAGTGTGTGGTTGCAGAAGGAGCTTGATCCCTGTGTGTGCCCAGTGTCCGCCA GCCGGGACCTTCGGCTTCCGCGGACCTTAGGGGACCCTTGGCGGCAGCTCCCGGCCTACT TCCCGCGCACGGCCATGTCTGGTAACGGCAACGCAGCCGCAACGGCGGAAGAAAATAGCC CAAAGATGAGAGTGATTCGTGTGGGTACCCGCAAAAGCCAGCTGGCCCGCATACAAACGG ACAGTGTGGTGGCAACGCTGAAAGCCTTATACCCAGGCCTGCAGTTTGAAATCATTGCTA TGTCCACCACAGGGGACAAGATTCTCGACACTGCACTTTCTAAGATTGGAGAGAAGAGCC TGTTTACCAAGGAGCTGGAACACGCGCTGGAGAGGAATGAAGTGGACCTGGTTGTTCATT CCCTCAAGGACCTGCCCACGGTGCTTCCTCCTGGCTTCACCATTGGAGCCGTCTGCAAGC GAGAGTGCCCCTATGATGCTGTTGTCTTTCACCCCAAATTTGTCGGGAAGACCCTAGAAA CCTTGCCAGAGAAGAGTGTGGTAGGAACCAGCTCCCTGCGGAGAGCGGCCCAGCTTCAGA GAAAGTTCCCACATCTGGAGTTCAAGAGTATTCGGGGAAACCTCAACACACGGCTTCGGA AGCTGGATGAGCTGCAGGAGTTCAGTGCCATCATCCTGGCTGCAGCTGGCCTGCAGCGCA TGGGGTGGCAGAACCGGGTGGGACAGATCCTGCACCCTGAGGAGTGTATGTATGCTGTGG GTCAGGGGGCCCTGGGCGTGGAAGTCCGAGCCAAGGACCAGGACATCCTGGATCTGGTGG GTGTGTTGCATGATCCTGAGACTCTGCTTCGCTGCATTGCTGAACGCGCCTTCCTGAGGC ACCTGGAAGGAGGCTGCAGTGTGCCAGTAGCAGTGCATACAGCTATGAAGGATGGGCAAC TCTACCTGACTGGAGGAGTCTGGAGTCTGAATGGTGCAGAGAGCATGCAAGAGACTATGC AGGCCACCATCCATGTCCCTGCTCAGCACGAAGATGGCCCTGAGGATGACCCACAGCTTG TGGGCATCACTGCCCGGAATATTCCTCGAGAAGCCCAACTGGCTGCTGAGAACCTGGGCA TCAGCCTGGCCACCTTGCTGCTGAACAAAGGTGCCAAGAACATCCTGGATGTTGCACGGC AACTCAATGATGCCCACTAACTGGTCTGCGGGGCACAGGTGCCTGGGTTACTGCTGCCCA GGGCCTCAGTGCCCCATTCTCACTGCTATTCAGGGAGTGATTACCCCAGGAGATTGAACT GCAGGGGCAGACACTTCCAGAATCTTGTCTCACTTTGGGGCCTTGTTGACTGCCTTGCCT CCTCAGTACGTTGGGGCTTCACTTCTAGAGAAAATCCTCTAATTAAGCCACAGCCTTTGA ATGTAACCATCTCTACTAATAAACCAGATTTGAACTAGATTTTGATTCTAGCGGGGTTGC AGGAAAGGTAACACACACAAAACCTTTTATTCCATACCTCAGAGGCTGGGACCCTTGTCC AGGTTCTTCTGGAACATGCTGTTTCAGTCTCAATACTTCTCATTTTCCAACGGAATAAAT TGTCTCCCAGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1041-1159, - strand, RNAz p=0.895984 | |
| 1200-1377, - strand, RNAz p=0.96049 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1041-1159, - strand, RNAz p=0.895984 | |
| 1200-1377, - strand, RNAz p=0.96049 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 3-168, gnl|bosTau2|chr15 (14276478-14276642) | |
| 3-168, gnl|Hg17|chr11 (118460823-118460987) | |
| 3-168, gnl|Mm7|chr9 (44278526-44278354) | |
| 633-746, gnl|bosTau2|chr15 (14282183-14282296) | |
| 633-746, gnl|Hg17|chr11 (118467333-118467455) | |
| 633-746, gnl|Mm7|chr9 (44272373-44272260) | |
| 782-911, gnl|bosTau2|chr15 (14282699-14282828) | |
| 782-911, gnl|canFam2|chr5 (17775239-17775111) | |
| 782-911, gnl|danRer3|chr5 (24828767-24828895) | |
| 782-911, gnl|echTel1|scaffold_303357 (44348-44220) | |
| 782-911, gnl|fr1|chrUn (211585222-211585348) | |
| 782-911, gnl|galGal2|chr24 (37966-37840) | |
| 782-911, gnl|hg17|chr11 (118468321-118468449) | |
| 782-911, gnl|Hg17|chr11 (118468320-118468449) | |
| 782-911, gnl|loxAfr1|scaffold_21399 (31901-32029) | |
| 782-911, gnl|mm7|chr9 (44271825-44271697) | |
| 782-911, gnl|Mm7|chr9 (44271824-44271695) | |
| 782-911, gnl|monDom2|scaffold_2 (119502297-119502169) | |
| 782-911, gnl|oryCun1|scaffold_136212 (3802-3674) | |
| 782-911, gnl|panTro1|chr9_random (4695621-4695749) | |
| 782-911, gnl|rheMac2|chr14 (117498595-117498723) | |
| 782-911, gnl|rn3|chr8 (47324138-47324010) | |
| 782-911, gnl|tetNig1|chr16 (8081781-8081659) | |
| 1041-1631, gnl|bosTau2|chr15 (14283395-14283970) | |
| 1041-1631, gnl|Hg17|chr11 (118469024-118469630) | |
| 1041-1631, gnl|Mm7|chr9 (44271192-44270623) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-168, gnl|bosTau2|chr15 (14276478-14276642) | |
| 3-168, gnl|Hg17|chr11 (118460823-118460987) | |
| 3-168, gnl|Mm7|chr9 (44278526-44278354) | |
| 633-746, gnl|bosTau2|chr15 (14282183-14282296) | |
| 633-746, gnl|Hg17|chr11 (118467333-118467455) | |
| 633-746, gnl|Mm7|chr9 (44272373-44272260) | |
| 782-911, gnl|bosTau2|chr15 (14282699-14282828) | |
| 782-911, gnl|canFam2|chr5 (17775239-17775111) | |
| 782-911, gnl|danRer3|chr5 (24828767-24828895) | |
| 782-911, gnl|echTel1|scaffold_303357 (44348-44220) | |
| 782-911, gnl|fr1|chrUn (211585222-211585348) | |
| 782-911, gnl|galGal2|chr24 (37966-37840) | |
| 782-911, gnl|hg17|chr11 (118468321-118468449) | |
| 782-911, gnl|Hg17|chr11 (118468320-118468449) | |
| 782-911, gnl|loxAfr1|scaffold_21399 (31901-32029) | |
| 782-911, gnl|mm7|chr9 (44271825-44271697) | |
| 782-911, gnl|Mm7|chr9 (44271824-44271695) | |
| 782-911, gnl|monDom2|scaffold_2 (119502297-119502169) | |
| 782-911, gnl|oryCun1|scaffold_136212 (3802-3674) | |
| 782-911, gnl|panTro1|chr9_random (4695621-4695749) | |
| 782-911, gnl|rheMac2|chr14 (117498595-117498723) | |
| 782-911, gnl|rn3|chr8 (47324138-47324010) | |
| 782-911, gnl|tetNig1|chr16 (8081781-8081659) | |
| 1041-1631, gnl|bosTau2|chr15 (14283395-14283970) | |
| 1041-1631, gnl|Hg17|chr11 (118469024-118469630) | |
| 1041-1631, gnl|Mm7|chr9 (44271192-44270623) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cki (0.660939) | |
| nbm (0.496623) | |
| elu (0.385356) | |
| cst (0.280073) | |
| ese (0.253004) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| csp (0.161186) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cly (0.120642) | |
| clu (0.119646) | |
| med (0.116252) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.660939) | |
| nbm (0.496623) | |
| elu (0.385356) | |
| cst (0.280073) | |
| ese (0.253004) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| csp (0.161186) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cly (0.120642) | |
| clu (0.119646) | |
| med (0.116252) |