Ss1.1-Pig4-TMW8051M03.3
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
AGATAAAGTTTTTATGCATGCAAAAAACAAATTCAAGGACAAGAGTCTTTTGGGAACACG TGAAGTTTTAAATGAGGAAGATGAAGTGCAGCCAAATGGAAAAATTTTTAAAAAGGTTAT TCTTGGGAACTATAATTGGCTGTCCTATGAAGAAGTCTTTGTTAGAGCTTCTAATTTTGG AAATGGCTTACAGATGTTGGGTCAGAAGCCGAAGACCAACATTGCTATCTTCTGTGAGAC CAGAGCAGAATGGATGATCGCTGCACAGGCCTGCTTCATGTATAATTTTCAGCTTGTTAC GTTATATGCTACTCTAGGAGGTCCAGCAATTGTTCATGGATTAAATGAAACAGAGGTGAC CAACATCATTACTAGTAAAGAACTCTTACAAACAAAGTTGAAGGATATAGTCTCTCTAGT GCCGCGCCTGCGGCACATCATCACAGTGGATGGTAAGCCACCGGCCTGGTCGGAGTTCCC CAAGGGTGTCATCGTGCACACCATGGCTGCGGTGCAGGCTCTGGGAGCCAAGGCAAGCGT GGAAAACAAACCTCAGAGCAAGCCGATGCCCCTAGATATTGCGGTGATCATGTATACAAG TGGATCCACAGGACTTCCAAAGGGGGTCATGATCTCCCATAGTAACATCATTGCTGGGAT AACTGGAATGGCAGAAAGGATTCCCGAACTGGGGGAGAAGGATGTTTACATTGGATATTT GCCTTTGGCCCATGTTTTAGAATTAAGTGCTGAGCTTGTCTGTCTTTCTCATGGATGCCG CATTGGCTACTCTTCACCACAGACTTTAGCAGATCAGTCTTCAAAAATAAAAAAAGGAAG CAAAGGGGATGCGTCCATGTTGAAACCGACACTAATGGCAGCTGTTCCGGAAATCATGGA TAGGATCTACAAAAATGTCATGAATAAAGTGAATGAAATGAGTAGTTTCCAACGCAATCT GTTTATTTTGGCATATAATTACAAAATGGAGCAGATTTCAAAAGGGTGTAGTACTCCGCT GTGTGATAGGTTTATTTTCCGGAAAGTTCGAAGCTTGCTGGGTGGAAATACTCGACTTCT GTTATGTGGAGGTGCTCCACTTTCTGCAGCCACACAACGATTCATGAATATCTGTTTTTG CTGTCCCGTTGGTCAAGGATACGGACTCACTGAATCTTCTGGGGCTGGAACAATTACAGA AGTGTGGGACTACAATACTGGCAGAGTGGGAGCACCATTAGTTTGCTGTGAAATCAAATT AAAGAACTGGGAAGAAGGTGGATACTTCAATACTGATAAACCACATCCCAGGGGCGAAAT TCTTATTGGTGGCCAAAATGTGACAATGGGATACTACAAAAATGAAGCAAAAACAAAAGC TGATTTCTTTGAAGATGAAAATGGACAGAGGTGGCTTTGTACTGGAGATATTGGAGAGTT TGACCCTGATGGTTGTTTAAAGATTATTGATCGTAAAAAGGACCTTGTAAAACTACAGGC GGGAGAATATGTTTCTCTTGGGAAAGTTGAGGCAGCTTTGAAGAATCTTCCACTAATAGA TAACATTTGTGCATATGCAAACAGTTACCATTCTTATGTCATTGGATTTGTTGTGCCAAA TCAAAAGGAACTAACAGAACTAGCACGAAAGAAAGGACTTACAGGGACTTGGGAGGAGCT GTGTAACAGTCGTGAAATGGAAAATGAGGTACTTAAAGTGCTTTCTGAAGCTGCTATTTC AGCAAGTCTGGAAAAGTTTGAAATTCCAGTAAAAATTCGTTTAAGCCCTGAACCGTGGAC CCCTGAAACTGGTCTGGTGACAGATGCCTTCAAGCTGAAACGCAAAGAGCTTAAAACACA TTACCAGGCGGACATTGAGCGAATGTATGGAAGGAAATAATTATTCTCTTTCAGCATCAG TTTGCTGCAGGGAGCTCAGATCAAATAGGAAAATACTTGAAATGCATGTCTCAAATTGTG AGGCAAACTCCATTCCTCCTGTTAAACCTAAACTGTTGTTTCTCATGACATCATCATTTT TAACTGACAGGATTAGTAAAATATTAAGACGGCAAACTTGTGTCTGTCTCTTCTTTCTTC CCCTCCTCCAAGTTACTTTACCACCTAGGACTGCACTTGTCAGCATGAAGACTTTTCCGA ATCATATTGGGGGACAGTGATTTTAAAACCTCAAGTTTTTAAACATGATTTATATGTTCT GTATAATGTTCAGTTTGTAACTTTTTAAAGTTTGGATGTATAGAGGGATAAATAGGAAAT ATAAGAATTGGTTATTTGGGGGGCTTTTTTACTTACAGTATTTAAAAATGCAAGGGTATG GATGTGAAATTATGTAAATTTCATTCAAATGCTTATGAATCAAATCATTGTTGAACAAAA GATTTGTTGCTGTGTAATTATTGTCTTGTATGCATTTGAGAGAAATAAATATACCCATAC TTACGTTTTAAGAAGTTGAGACCT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
AGATAAAGTTTTTATGCATGCAAAAAACAAATTCAAGGACAAGAGTCTTTTGGGAACACG TGAAGTTTTAAATGAGGAAGATGAAGTGCAGCCAAATGGAAAAATTTTTAAAAAGGTTAT TCTTGGGAACTATAATTGGCTGTCCTATGAAGAAGTCTTTGTTAGAGCTTCTAATTTTGG AAATGGCTTACAGATGTTGGGTCAGAAGCCGAAGACCAACATTGCTATCTTCTGTGAGAC CAGAGCAGAATGGATGATCGCTGCACAGGCCTGCTTCATGTATAATTTTCAGCTTGTTAC GTTATATGCTACTCTAGGAGGTCCAGCAATTGTTCATGGATTAAATGAAACAGAGGTGAC CAACATCATTACTAGTAAAGAACTCTTACAAACAAAGTTGAAGGATATAGTCTCTCTAGT GCCGCGCCTGCGGCACATCATCACAGTGGATGGTAAGCCACCGGCCTGGTCGGAGTTCCC CAAGGGTGTCATCGTGCACACCATGGCTGCGGTGCAGGCTCTGGGAGCCAAGGCAAGCGT GGAAAACAAACCTCAGAGCAAGCCGATGCCCCTAGATATTGCGGTGATCATGTATACAAG TGGATCCACAGGACTTCCAAAGGGGGTCATGATCTCCCATAGTAACATCATTGCTGGGAT AACTGGAATGGCAGAAAGGATTCCCGAACTGGGGGAGAAGGATGTTTACATTGGATATTT GCCTTTGGCCCATGTTTTAGAATTAAGTGCTGAGCTTGTCTGTCTTTCTCATGGATGCCG CATTGGCTACTCTTCACCACAGACTTTAGCAGATCAGTCTTCAAAAATAAAAAAAGGAAG CAAAGGGGATGCGTCCATGTTGAAACCGACACTAATGGCAGCTGTTCCGGAAATCATGGA TAGGATCTACAAAAATGTCATGAATAAAGTGAATGAAATGAGTAGTTTCCAACGCAATCT GTTTATTTTGGCATATAATTACAAAATGGAGCAGATTTCAAAAGGGTGTAGTACTCCGCT GTGTGATAGGTTTATTTTCCGGAAAGTTCGAAGCTTGCTGGGTGGAAATACTCGACTTCT GTTATGTGGAGGTGCTCCACTTTCTGCAGCCACACAACGATTCATGAATATCTGTTTTTG CTGTCCCGTTGGTCAAGGATACGGACTCACTGAATCTTCTGGGGCTGGAACAATTACAGA AGTGTGGGACTACAATACTGGCAGAGTGGGAGCACCATTAGTTTGCTGTGAAATCAAATT AAAGAACTGGGAAGAAGGTGGATACTTCAATACTGATAAACCACATCCCAGGGGCGAAAT TCTTATTGGTGGCCAAAATGTGACAATGGGATACTACAAAAATGAAGCAAAAACAAAAGC TGATTTCTTTGAAGATGAAAATGGACAGAGGTGGCTTTGTACTGGAGATATTGGAGAGTT TGACCCTGATGGTTGTTTAAAGATTATTGATCGTAAAAAGGACCTTGTAAAACTACAGGC GGGAGAATATGTTTCTCTTGGGAAAGTTGAGGCAGCTTTGAAGAATCTTCCACTAATAGA TAACATTTGTGCATATGCAAACAGTTACCATTCTTATGTCATTGGATTTGTTGTGCCAAA TCAAAAGGAACTAACAGAACTAGCACGAAAGAAAGGACTTACAGGGACTTGGGAGGAGCT GTGTAACAGTCGTGAAATGGAAAATGAGGTACTTAAAGTGCTTTCTGAAGCTGCTATTTC AGCAAGTCTGGAAAAGTTTGAAATTCCAGTAAAAATTCGTTTAAGCCCTGAACCGTGGAC CCCTGAAACTGGTCTGGTGACAGATGCCTTCAAGCTGAAACGCAAAGAGCTTAAAACACA TTACCAGGCGGACATTGAGCGAATGTATGGAAGGAAATAATTATTCTCTTTCAGCATCAG TTTGCTGCAGGGAGCTCAGATCAAATAGGAAAATACTTGAAATGCATGTCTCAAATTGTG AGGCAAACTCCATTCCTCCTGTTAAACCTAAACTGTTGTTTCTCATGACATCATCATTTT TAACTGACAGGATTAGTAAAATATTAAGACGGCAAACTTGTGTCTGTCTCTTCTTTCTTC CCCTCCTCCAAGTTACTTTACCACCTAGGACTGCACTTGTCAGCATGAAGACTTTTCCGA ATCATATTGGGGGACAGTGATTTTAAAACCTCAAGTTTTTAAACATGATTTATATGTTCT GTATAATGTTCAGTTTGTAACTTTTTAAAGTTTGGATGTATAGAGGGATAAATAGGAAAT ATAAGAATTGGTTATTTGGGGGGCTTTTTTACTTACAGTATTTAAAAATGCAAGGGTATG GATGTGAAATTATGTAAATTTCATTCAAATGCTTATGAATCAAATCATTGTTGAACAAAA GATTTGTTGCTGTGTAATTATTGTCTTGTATGCATTTGAGAGAAATAAATATACCCATAC TTACGTTTTAAGAAGTTGAGACCT |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
2330-2449, - strand, RNAz p=0.516541 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
2330-2449, - strand, RNAz p=0.516541 |
Aligned organism(s): 68 entry(ies) | More info |
Aligned organism(s): 68 entry(ies) | Help | Less info |
107-293, gnl|bosTau2|chr14 (1842971-1842785) | |
107-293, gnl|canFam2|chr37 (31910378-31910551) | |
107-293, gnl|canFam2|chr37 (31910359-31910547) | |
107-293, gnl|danRer3|chr14 (28012313-28012158) | |
107-293, gnl|danRer3|chrNA (21858054-21858239) | |
107-293, gnl|dasNov1|scaffold_19264 (10577-10755) | |
107-293, gnl|dasNov1|scaffold_19264 (10556-10746) | |
107-293, gnl|echTel1|scaffold_289672 (45773-45595) | |
107-293, gnl|echTel1|scaffold_289672 (45790-45604) | |
107-293, gnl|fr1|chrUn (281946206-281946378) | |
107-293, gnl|fr1|chrUn (120462368-120462553) | |
107-293, gnl|galGal2|chr9 (5568607-5568441) | |
107-293, gnl|galGal2|chr9 (5568620-5568444) | |
107-293, gnl|hg17|chr2 (223606525-223606710) | |
107-293, gnl|Hg17|chr2 (223606533-223606719) | |
107-293, gnl|hg17|chr3 (134962213-134962391) | |
107-293, gnl|loxAfr1|scaffold_27353 (8464-8642) | |
107-293, gnl|loxAfr1|scaffold_27353 (8446-8633) | |
107-293, gnl|mm7|chr1 (78905349-78905527) | |
107-293, gnl|mm7|chr1 (78905325-78905518) | |
107-293, gnl|Mm7|chr1 (78905341-78905527) | |
107-293, gnl|monDom2|scaffold_28 (3736172-3736350) | |
107-293, gnl|monDom2|scaffold_28 (3736157-3736341) | |
107-293, gnl|oryCun1|scaffold_174606 (44464-44881) | |
107-293, gnl|oryCun1|scaffold_182850 (5755-5943) | |
107-293, gnl|panTro1|chr13 (114187819-114188004) | |
107-293, gnl|panTro1|chr2 (137124732-137124910) | |
107-293, gnl|rheMac2|chr12 (86796906-86797091) | |
107-293, gnl|rheMac2|chr2 (153987732-153987557) | |
107-293, gnl|rn3|chr9 (78271698-78271876) | |
107-293, gnl|rn3|chr9 (78271670-78271867) | |
107-293, gnl|tetNig1|chr15 (5283518-5283346) | |
107-293, gnl|tetNig1|chr16 (7176616-7176434) | |
107-293, gnl|xenTro1|scaffold_209 (1061790-1061975) | |
294-404, gnl|bosTau2|chr14 (1841750-1841640) | |
294-404, gnl|Hg17|chr2 (223608269-223608379) | |
294-404, gnl|Mm7|chr1 (78907382-78907492) | |
542-743, gnl|bosTau2|chr14 (1839049-1838848) | |
542-743, gnl|Hg17|chr2 (223611502-223611734) | |
542-743, gnl|Mm7|chr1 (78911308-78911534) | |
1027-1202, gnl|bosTau2|chr14 (1832902-1832727) | |
1027-1202, gnl|canFam2|chr37 (31919947-31920164) | |
1027-1202, gnl|danRer3|chrNA (21869331-21869516) | |
1027-1202, gnl|dasNov1|scaffold_22682 (19964-19756) | |
1027-1202, gnl|echTel1|scaffold_297549 (3196-3405) | |
1027-1202, gnl|fr1|chrUn (120468985-120469162) | |
1027-1202, gnl|galGal2|chr9 (5558405-5558219) | |
1027-1202, gnl|hg17|chr2 (223617206-223617417) | |
1027-1202, gnl|Hg17|chr2 (223617237-223617412) | |
1027-1202, gnl|loxAfr1|scaffold_29834 (6565-6357) | |
1027-1202, gnl|mm7|chr1 (78916077-78916286) | |
1027-1202, gnl|Mm7|chr1 (78916106-78916281) | |
1027-1202, gnl|monDom2|scaffold_28 (3792678-3792879) | |
1027-1202, gnl|oryCun1|scaffold_182850 (19094-19307) | |
1027-1202, gnl|panTro1|chr13 (114198549-114198760) | |
1027-1202, gnl|rheMac2|chr12 (86807386-86807597) | |
1027-1202, gnl|rn3|chr9 (78282171-78282379) | |
1027-1202, gnl|tetNig1|chr16 (7170866-7170687) | |
1027-1202, gnl|xenTro1|scaffold_209 (1083570-1083760) | |
1276-1469, gnl|bosTau2|chr14 (1829993-1829800) | |
1276-1469, gnl|Hg17|chr2 (223620842-223621035) | |
1276-1469, gnl|Mm7|chr1 (78918380-78918573) | |
1739-2484, gnl|bosTau2|chr14 (1822689-1821943) | |
1739-2484, gnl|Hg17|chr2 (223631716-223632455) | |
1739-2484, gnl|Mm7|chr1 (78923367-78924094) | |
2251-2472, gnl|bosTau2|chr12 (6917118-6917334) | |
2251-2472, gnl|Hg17|chr2 (223632227-223632443) | |
2251-2472, gnl|Mm7|chr1 (78923873-78924090) |
Aligned organism(s): 68 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
107-293, gnl|bosTau2|chr14 (1842971-1842785) | |
107-293, gnl|canFam2|chr37 (31910378-31910551) | |
107-293, gnl|canFam2|chr37 (31910359-31910547) | |
107-293, gnl|danRer3|chr14 (28012313-28012158) | |
107-293, gnl|danRer3|chrNA (21858054-21858239) | |
107-293, gnl|dasNov1|scaffold_19264 (10577-10755) | |
107-293, gnl|dasNov1|scaffold_19264 (10556-10746) | |
107-293, gnl|echTel1|scaffold_289672 (45773-45595) | |
107-293, gnl|echTel1|scaffold_289672 (45790-45604) | |
107-293, gnl|fr1|chrUn (281946206-281946378) | |
107-293, gnl|fr1|chrUn (120462368-120462553) | |
107-293, gnl|galGal2|chr9 (5568607-5568441) | |
107-293, gnl|galGal2|chr9 (5568620-5568444) | |
107-293, gnl|hg17|chr2 (223606525-223606710) | |
107-293, gnl|Hg17|chr2 (223606533-223606719) | |
107-293, gnl|hg17|chr3 (134962213-134962391) | |
107-293, gnl|loxAfr1|scaffold_27353 (8464-8642) | |
107-293, gnl|loxAfr1|scaffold_27353 (8446-8633) | |
107-293, gnl|mm7|chr1 (78905349-78905527) | |
107-293, gnl|mm7|chr1 (78905325-78905518) | |
107-293, gnl|Mm7|chr1 (78905341-78905527) | |
107-293, gnl|monDom2|scaffold_28 (3736172-3736350) | |
107-293, gnl|monDom2|scaffold_28 (3736157-3736341) | |
107-293, gnl|oryCun1|scaffold_174606 (44464-44881) | |
107-293, gnl|oryCun1|scaffold_182850 (5755-5943) | |
107-293, gnl|panTro1|chr13 (114187819-114188004) | |
107-293, gnl|panTro1|chr2 (137124732-137124910) | |
107-293, gnl|rheMac2|chr12 (86796906-86797091) | |
107-293, gnl|rheMac2|chr2 (153987732-153987557) | |
107-293, gnl|rn3|chr9 (78271698-78271876) | |
107-293, gnl|rn3|chr9 (78271670-78271867) | |
107-293, gnl|tetNig1|chr15 (5283518-5283346) | |
107-293, gnl|tetNig1|chr16 (7176616-7176434) | |
107-293, gnl|xenTro1|scaffold_209 (1061790-1061975) | |
294-404, gnl|bosTau2|chr14 (1841750-1841640) | |
294-404, gnl|Hg17|chr2 (223608269-223608379) | |
294-404, gnl|Mm7|chr1 (78907382-78907492) | |
542-743, gnl|bosTau2|chr14 (1839049-1838848) | |
542-743, gnl|Hg17|chr2 (223611502-223611734) | |
542-743, gnl|Mm7|chr1 (78911308-78911534) | |
1027-1202, gnl|bosTau2|chr14 (1832902-1832727) | |
1027-1202, gnl|canFam2|chr37 (31919947-31920164) | |
1027-1202, gnl|danRer3|chrNA (21869331-21869516) | |
1027-1202, gnl|dasNov1|scaffold_22682 (19964-19756) | |
1027-1202, gnl|echTel1|scaffold_297549 (3196-3405) | |
1027-1202, gnl|fr1|chrUn (120468985-120469162) | |
1027-1202, gnl|galGal2|chr9 (5558405-5558219) | |
1027-1202, gnl|hg17|chr2 (223617206-223617417) | |
1027-1202, gnl|Hg17|chr2 (223617237-223617412) | |
1027-1202, gnl|loxAfr1|scaffold_29834 (6565-6357) | |
1027-1202, gnl|mm7|chr1 (78916077-78916286) | |
1027-1202, gnl|Mm7|chr1 (78916106-78916281) | |
1027-1202, gnl|monDom2|scaffold_28 (3792678-3792879) | |
1027-1202, gnl|oryCun1|scaffold_182850 (19094-19307) | |
1027-1202, gnl|panTro1|chr13 (114198549-114198760) | |
1027-1202, gnl|rheMac2|chr12 (86807386-86807597) | |
1027-1202, gnl|rn3|chr9 (78282171-78282379) | |
1027-1202, gnl|tetNig1|chr16 (7170866-7170687) | |
1027-1202, gnl|xenTro1|scaffold_209 (1083570-1083760) | |
1276-1469, gnl|bosTau2|chr14 (1829993-1829800) | |
1276-1469, gnl|Hg17|chr2 (223620842-223621035) | |
1276-1469, gnl|Mm7|chr1 (78918380-78918573) | |
1739-2484, gnl|bosTau2|chr14 (1822689-1821943) | |
1739-2484, gnl|Hg17|chr2 (223631716-223632455) | |
1739-2484, gnl|Mm7|chr1 (78923367-78924094) | |
2251-2472, gnl|bosTau2|chr12 (6917118-6917334) | |
2251-2472, gnl|Hg17|chr2 (223632227-223632443) | |
2251-2472, gnl|Mm7|chr1 (78923873-78924090) |
Expressed library(ies): 42 entry(ies) | More info |
Expressed library(ies): 42 entry(ies) | Help | Less info |
mgm (5.59062) | |
mga (2.72349) | |
mgp (1.1534) | |
tra (0.984737) | |
sin (0.69979) | |
lyg (0.665513) | |
jej (0.593531) | |
ret (0.514933) | |
pro (0.512033) | |
mcp (0.511945) | |
cbe (0.478469) | |
cbr (0.383926) | |
rec (0.346141) | |
duo (0.345602) | |
fco (0.314416) | |
ski (0.29347) | |
cte (0.29274) | |
fce (0.271592) | |
ssp (0.271039) | |
thg (0.253582) | |
spc (0.226732) | |
tes (0.207814) | |
fcc (0.197785) | |
eje (0.197668) | |
fbs (0.175346) | |
cje (0.165235) | |
liv (0.146284) | |
lin (0.145603) | |
spl (0.143184) | |
cst (0.140036) | |
nca (0.136874) | |
ste (0.135208) | |
pla (0.133672) | |
nmm (0.132802) | |
ute (0.132784) | |
kid (0.129735) | |
sug (0.127291) | |
ese (0.126502) | |
bla (0.124347) | |
med (0.116252) | |
jca (0.11396) | |
cty (0.10408) |
Expressed library(ies): 42 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
mgm (5.59062) | |
mga (2.72349) | |
mgp (1.1534) | |
tra (0.984737) | |
sin (0.69979) | |
lyg (0.665513) | |
jej (0.593531) | |
ret (0.514933) | |
pro (0.512033) | |
mcp (0.511945) | |
cbe (0.478469) | |
cbr (0.383926) | |
rec (0.346141) | |
duo (0.345602) | |
fco (0.314416) | |
ski (0.29347) | |
cte (0.29274) | |
fce (0.271592) | |
ssp (0.271039) | |
thg (0.253582) | |
spc (0.226732) | |
tes (0.207814) | |
fcc (0.197785) | |
eje (0.197668) | |
fbs (0.175346) | |
cje (0.165235) | |
liv (0.146284) | |
lin (0.145603) | |
spl (0.143184) | |
cst (0.140036) | |
nca (0.136874) | |
ste (0.135208) | |
pla (0.133672) | |
nmm (0.132802) | |
ute (0.132784) | |
kid (0.129735) | |
sug (0.127291) | |
ese (0.126502) | |
bla (0.124347) | |
med (0.116252) | |
jca (0.11396) | |
cty (0.10408) |