Non-Coding RNA Search

Ss1.1-Pig4-TMW8051M06.3

Sequence:


               
               TCCCTCTGCAGTCTTTGGTGATGGACGTTCTCTGTTCACCCGAGCCCCTTAAAGGCGTTA
CTGCCGATCCTTTGTACACAGTGGAAAGCCCAGACTGGATGGACTGTCTTTTCTCTGGCA
TTAAGGGTACATGACTGGGTTCCACTGAGCACACCTCTATCTCAGCCCCTCCTGTAATGT
AGCACAGAATCATGAGAGAGAAATTTCCCTAACTGTTCCTCCTGAGAGCCGCCCCTCTCC
TCTCCCTTCATTCCCTGAACTGCTCAGCAGGGCACTCGGAAGATGCCGGGACTGACAGCT
TAACTCTAGTCCCGCTGCAGTAGGCGAGGGCCACAGTGACAGAATTCTCTGTAGAGATGA
TACCGTAGCATTTCCCTTGGCCCTGAGTCTGGGTGGGTCCAGTCAGTTCAGATTCACAAA
TACTCAGAAGCCCAGGTAAAAGCTGCTAGTTTTTATATGACTTGCAGTGATAGAAAATTT
CTTCCAGTTCAATGGCATTTTGTATCACTATGTGTGCAGTTTTTACAGTGTTAAAAACAT
TCCCACACTGTACTCCATTTGATCTTCTCAGATAGAAAGTGTACTCTATTCAGCCAGTAC
CATTTTTTGGATTTTTTTTTTTTTTTTGGCCACTCCCATGGCATGTGGAAACTCCCCGGG
CCAGGGATCAAACCTGTGCCACGGCTGCAACCCAAGCCGCAGCAGTGACAACGCTGGATC
CTTAACTTTCTGGGCCACAAGAGAACTCCCAGCCACTACATTATATGCAATAAACAATGT
TTAGAACTGAAGTCTTCCAGTGCCAGCATGTGCAGTATGTTTGTGTGAAATGTTTAAGGA
TATACAATGGTACTTTGTATGAATTGGTCCTTGCTCTCCATAAATGTGGCGTGAGGTAAT
TGTGCTGCTGCAGAGTACCGGGAATTGATGGGGATAGGGAGCGCTGCAGCTTGTCTCCTG
TGAGGTCCTGCTAGTGGTTTTAGAGGTGGTTCCACCGAGCTTGTAGTGACCATTTAACAA
TATGTAAACTTGGTTTGTAATTAAAAAATTTTCTTCTTTTTCCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCTCTGCAGTCTTTGGTGATGGACGTTCTCTGTTCACCCGAGCCCCTTAAAGGCGTTA
CTGCCGATCCTTTGTACACAGTGGAAAGCCCAGACTGGATGGACTGTCTTTTCTCTGGCA
TTAAGGGTACATGACTGGGTTCCACTGAGCACACCTCTATCTCAGCCCCTCCTGTAATGT
AGCACAGAATCATGAGAGAGAAATTTCCCTAACTGTTCCTCCTGAGAGCCGCCCCTCTCC
TCTCCCTTCATTCCCTGAACTGCTCAGCAGGGCACTCGGAAGATGCCGGGACTGACAGCT
TAACTCTAGTCCCGCTGCAGTAGGCGAGGGCCACAGTGACAGAATTCTCTGTAGAGATGA
TACCGTAGCATTTCCCTTGGCCCTGAGTCTGGGTGGGTCCAGTCAGTTCAGATTCACAAA
TACTCAGAAGCCCAGGTAAAAGCTGCTAGTTTTTATATGACTTGCAGTGATAGAAAATTT
CTTCCAGTTCAATGGCATTTTGTATCACTATGTGTGCAGTTTTTACAGTGTTAAAAACAT
TCCCACACTGTACTCCATTTGATCTTCTCAGATAGAAAGTGTACTCTATTCAGCCAGTAC
CATTTTTTGGATTTTTTTTTTTTTTTTGGCCACTCCCATGGCATGTGGAAACTCCCCGGG
CCAGGGATCAAACCTGTGCCACGGCTGCAACCCAAGCCGCAGCAGTGACAACGCTGGATC
CTTAACTTTCTGGGCCACAAGAGAACTCCCAGCCACTACATTATATGCAATAAACAATGT
TTAGAACTGAAGTCTTCCAGTGCCAGCATGTGCAGTATGTTTGTGTGAAATGTTTAAGGA
TATACAATGGTACTTTGTATGAATTGGTCCTTGCTCTCCATAAATGTGGCGTGAGGTAAT
TGTGCTGCTGCAGAGTACCGGGAATTGATGGGGATAGGGAGCGCTGCAGCTTGTCTCCTG
TGAGGTCCTGCTAGTGGTTTTAGAGGTGGTTCCACCGAGCTTGTAGTGACCATTTAACAA
TATGTAAACTTGGTTTGTAATTAAAAAATTTTCTTCTTTTTCCAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-600, gnl|bosTau2|chr5 (18512474-18511870)
               

               
               1-600, gnl|Hg17|chr12 (49666979-49666361)
               

               
               1-600, gnl|Mm7|chr15 (100378978-100378178)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr5 (18512474-18511870)
               

               
               1-600, gnl|Hg17|chr12 (49666979-49666361)
               

               
               1-600, gnl|Mm7|chr15 (100378978-100378178)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               cje (0.330469)
               

               
               fce (0.271592)
               

               
               cmu (0.186393)
               

               
               duo (0.172801)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               nbm (0.0993246)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.330469)
               

               
               fce (0.271592)
               

               
               cmu (0.186393)
               

               
               duo (0.172801)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               nbm (0.0993246)

	1-600, gnl\|bosTau2\|chr5 (18512474-18511870)
	1-600, gnl\|Hg17\|chr12 (49666979-49666361)
	1-600, gnl\|Mm7\|chr15 (100378978-100378178)

	cje (0.330469)
	fce (0.271592)
	cmu (0.186393)
	duo (0.172801)
	lnt (0.142308)
	nca (0.136874)
	nmm (0.132802)
	sug (0.127291)
	nbm (0.0993246)