Non-Coding RNA Search

Ss1.1-Pig4-TMW8051M14.3

Sequence:


               
               CAGATCACAGAGCTGCAGCAGTTTTGCAGTAACATGTTGGAGGAGCACCAGCGACTCACA
GTTCATGCCAAATTGCAGACAATAAAGAACGAAAATCTCAAAAACAAAAAGCGAAGTGCC
AGGATAGCTGTGTGGCTACAAAAAAACACATAATTTAGTGGCGACTTTCAGCCTTCCTCT
TGCATGTTGTAATGTAGTCACAGTTTTGTCTTCCCATGAGTCTGGAAAACCACACGTTTT
GTTATTTGTATTTCAGTCACATTTCTTCTCAGCGTTCTGTTCCTCCCGGGTTGTCATGTT
TGGCCCTCAGGCTCAGTGATTGCTGAGGATTTTGCCAACAGTGTGTATTTCTGGGGAAGA
TTTTACTTCATGTTGGGCTGAAACCACATAATTTACTCTAAATGCCTTGTAAAAGCAAAT
TTACCTTAGAACGTCTTGCTTATTCTGTTGTGAAGGCCAGTGGAATATGACATCATTGGC
TAAATGAACACTATTTTCTGAGGGAAATACAGATTTGTAATACTCTAGGGTTTGTTTGGT
TCAGTATTCAAAAGAGTAATGAGCAGATGACACAAGAGAGTAGAGAAACAGGAACCAGAG
AAATAATATTTACTAGAAGACAGAAAAAGCGAAGAAATGCAAGTCTGAAAAAGAAGACAC
AATTTTATGAGCCATGTTAAATGCTCCAAAGGCAAGAAATGTGTCTTTTCCTGCTCATTT
CTCTCCCCAGTGCCTACTGCATCACACCACTTTTCTGGCTACTGAACTTTATGGTTTCAC
AAAGAGACCTGGGATCACAGGATCCACGAAGTGCCTTTAGGCTTGCTGTTGTGGAGGCCG
GATGGAAAGCAAGGCTCTGCTTGGAGGCTCTTGACTGTGTAATTCACCTGTGGGATGGAC
ACTTTTTCAGCCAAAGTTTAGAAGCAGATACAGTGATGTCAACAGACCATAGCAATTATG
GGCTAATCTCCAGCACAAAGGGAAATGGTCAAATAAAGAGAAATGGGACTAAAAGATTAA
CCAGACAATAATCTTTCCAGCTTTACACTCAGGGGATTCTGTTTGAAATGTGGCTTCATT
TGACCAAATTGAATCTGTGTGTCGTTTGGTCAACTTTAAACATTTTCATCAGTCAGAATA
TATGGAAGCAGCTTAGTTTTGTCACACCTGATGTAATCAGGACTGCTAAGGCAAATCATC
TTACTCTAGACTTTGTGTGTATACCATTTAATTCTTGTTTTAATTTTGATTTTGTTTTTT
AATTTTGAATTTGAATAGAATGGGGTAAAAGTACAGATCTCCTATCTACCTCAAAGTGAT
GTTATAAAGATTAAAGAATATGTCAATTAAAAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATCACAGAGCTGCAGCAGTTTTGCAGTAACATGTTGGAGGAGCACCAGCGACTCACA
GTTCATGCCAAATTGCAGACAATAAAGAACGAAAATCTCAAAAACAAAAAGCGAAGTGCC
AGGATAGCTGTGTGGCTACAAAAAAACACATAATTTAGTGGCGACTTTCAGCCTTCCTCT
TGCATGTTGTAATGTAGTCACAGTTTTGTCTTCCCATGAGTCTGGAAAACCACACGTTTT
GTTATTTGTATTTCAGTCACATTTCTTCTCAGCGTTCTGTTCCTCCCGGGTTGTCATGTT
TGGCCCTCAGGCTCAGTGATTGCTGAGGATTTTGCCAACAGTGTGTATTTCTGGGGAAGA
TTTTACTTCATGTTGGGCTGAAACCACATAATTTACTCTAAATGCCTTGTAAAAGCAAAT
TTACCTTAGAACGTCTTGCTTATTCTGTTGTGAAGGCCAGTGGAATATGACATCATTGGC
TAAATGAACACTATTTTCTGAGGGAAATACAGATTTGTAATACTCTAGGGTTTGTTTGGT
TCAGTATTCAAAAGAGTAATGAGCAGATGACACAAGAGAGTAGAGAAACAGGAACCAGAG
AAATAATATTTACTAGAAGACAGAAAAAGCGAAGAAATGCAAGTCTGAAAAAGAAGACAC
AATTTTATGAGCCATGTTAAATGCTCCAAAGGCAAGAAATGTGTCTTTTCCTGCTCATTT
CTCTCCCCAGTGCCTACTGCATCACACCACTTTTCTGGCTACTGAACTTTATGGTTTCAC
AAAGAGACCTGGGATCACAGGATCCACGAAGTGCCTTTAGGCTTGCTGTTGTGGAGGCCG
GATGGAAAGCAAGGCTCTGCTTGGAGGCTCTTGACTGTGTAATTCACCTGTGGGATGGAC
ACTTTTTCAGCCAAAGTTTAGAAGCAGATACAGTGATGTCAACAGACCATAGCAATTATG
GGCTAATCTCCAGCACAAAGGGAAATGGTCAAATAAAGAGAAATGGGACTAAAAGATTAA
CCAGACAATAATCTTTCCAGCTTTACACTCAGGGGATTCTGTTTGAAATGTGGCTTCATT
TGACCAAATTGAATCTGTGTGTCGTTTGGTCAACTTTAAACATTTTCATCAGTCAGAATA
TATGGAAGCAGCTTAGTTTTGTCACACCTGATGTAATCAGGACTGCTAAGGCAAATCATC
TTACTCTAGACTTTGTGTGTATACCATTTAATTCTTGTTTTAATTTTGATTTTGTTTTTT
AATTTTGAATTTGAATAGAATGGGGTAAAAGTACAGATCTCCTATCTACCTCAAAGTGAT
GTTATAAAGATTAAAGAATATGTCAATTAAAAGCCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               11-1356, gnl|bosTau2|chr14 (12648283-12646956)
               

               
               11-1356, gnl|Hg17|chr5 (115389572-115390918)
               

               
               11-1356, gnl|Mm7|chr18 (47282702-47284094)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-1356, gnl|bosTau2|chr14 (12648283-12646956)
               

               
               11-1356, gnl|Hg17|chr5 (115389572-115390918)
               

               
               11-1356, gnl|Mm7|chr18 (47282702-47284094)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	11-1356, gnl\|bosTau2\|chr14 (12648283-12646956)
	11-1356, gnl\|Hg17\|chr5 (115389572-115390918)
	11-1356, gnl\|Mm7\|chr18 (47282702-47284094)

	fat (0.147427)
	csk (0.140746)
	sug (0.127291)
	eru (0.120048)
	ecc (0.115035)