Ss1.1-Pig4-TMW8051N02.3
|
GAGTCGTCCTTCTTGGAGTGAGTCGTCTTTCGCATCCACACGTGTCCTCCGCTGCTAAAA
TGCTGCAACTGCTACGCTGCGTGCCCCGCGCCCTGGGCACCGCCGTCGCCGGCCTTTGCG
TCGCCGCGCCCTCCCAGCCGCTCCCGCGGCTGCTGCAGCCCGCGTCCCGGCTGTGCGCCC
GGCCCTTCGGGCTCCTGAGCGTGCGTGCCGGGTCGGTGCAGCCGCCCAGCCTCCTACGGC
CTCGGGGGCCCTGCGCCTGCGGCTGCGGCTGCGGCGGGCTGCACACCGAAGGGGACAAAG
CTTTTGTTGAATTTCTTAATGATGAGATTAAGGAAGAGAAGAAGATACAGAAGCATAAGT
CTCTCCCCAAGATGTCTGGAGGTTGGGAGCTGGAAGTGAATGGGACAGAAGCCAAATTAG
TGAGGAAAGTTGCTGGAGAAAAGATCACTGTCACCTTCAACATCAACAACAGCATCCCAC
CCCCCTATGGGGAGGAGGAGCAGCCGTCGGAAGGGCAGAAGGTTGAGGAACAGGAGCCTG
AACTGACGTCCACTCCCAACTTCGTGGTTGAAGTGACAAAGGATGGTAGCAAGAAGGCCC
TCGTGCTGGATTGTCACTATCCAGAAGATGAGATTGGACAAGAGGACGAGGCGCAGAGTG
ACATTTTCTCTATCAAGGAAGTGAGTTTTCAGTCCACAGACGATTCTGACTGGAAGGACA
CAAATTACACACTCAACACAGACTCGCTGGACTGGGGCTTATATGACCACCTAATGGATT
TCCTTGCGGACCGAGGGGTGGACAACACTTTTGCCGACGAGTTGGTGGAGCTCAGCACAG
CCCTGGAGCACCAGGAGTACATTACTTTTCTCGAGGACCTCAAAGGTTTCGTCAAAAGCC
AGTAGGCAGACAAGGCACTAGACACCTTGACTTTGTGGCAGGCTTTGGCCGGCAAACAAA
AACCTACTCTGAGGCCAGACCCACGTGCTTTGAAATGGTATTCATCCCACTATCATGGAA
AATAATTCAATTTTAACTTATTTCTGTTGCCTCATATTTGCCATTCATTTATTCTCTACA
AACCTGTTATTTCTAGATTTTTGTATAACATGATGATGGACAATAAAATCTCCAAGGTGG
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAGTCGTCCTTCTTGGAGTGAGTCGTCTTTCGCATCCACACGTGTCCTCCGCTGCTAAAA
TGCTGCAACTGCTACGCTGCGTGCCCCGCGCCCTGGGCACCGCCGTCGCCGGCCTTTGCG
TCGCCGCGCCCTCCCAGCCGCTCCCGCGGCTGCTGCAGCCCGCGTCCCGGCTGTGCGCCC
GGCCCTTCGGGCTCCTGAGCGTGCGTGCCGGGTCGGTGCAGCCGCCCAGCCTCCTACGGC
CTCGGGGGCCCTGCGCCTGCGGCTGCGGCTGCGGCGGGCTGCACACCGAAGGGGACAAAG
CTTTTGTTGAATTTCTTAATGATGAGATTAAGGAAGAGAAGAAGATACAGAAGCATAAGT
CTCTCCCCAAGATGTCTGGAGGTTGGGAGCTGGAAGTGAATGGGACAGAAGCCAAATTAG
TGAGGAAAGTTGCTGGAGAAAAGATCACTGTCACCTTCAACATCAACAACAGCATCCCAC
CCCCCTATGGGGAGGAGGAGCAGCCGTCGGAAGGGCAGAAGGTTGAGGAACAGGAGCCTG
AACTGACGTCCACTCCCAACTTCGTGGTTGAAGTGACAAAGGATGGTAGCAAGAAGGCCC
TCGTGCTGGATTGTCACTATCCAGAAGATGAGATTGGACAAGAGGACGAGGCGCAGAGTG
ACATTTTCTCTATCAAGGAAGTGAGTTTTCAGTCCACAGACGATTCTGACTGGAAGGACA
CAAATTACACACTCAACACAGACTCGCTGGACTGGGGCTTATATGACCACCTAATGGATT
TCCTTGCGGACCGAGGGGTGGACAACACTTTTGCCGACGAGTTGGTGGAGCTCAGCACAG
CCCTGGAGCACCAGGAGTACATTACTTTTCTCGAGGACCTCAAAGGTTTCGTCAAAAGCC
AGTAGGCAGACAAGGCACTAGACACCTTGACTTTGTGGCAGGCTTTGGCCGGCAAACAAA
AACCTACTCTGAGGCCAGACCCACGTGCTTTGAAATGGTATTCATCCCACTATCATGGAA
AATAATTCAATTTTAACTTATTTCTGTTGCCTCATATTTGCCATTCATTTATTCTCTACA
AACCTGTTATTTCTAGATTTTTGTATAACATGATGATGGACAATAAAATCTCCAAGGTGG
AAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|8699626|gb|AAF78763.1| |
Protein identifier
|
gi|8699626|gb|AAF78763.1| |
|
1-295, gnl|bosTau2|chr19 (18542752-18542458) |
|
1-295, gnl|canFam2|chr5 (34352015-34351851) |
|
1-295, gnl|danRer3|chrNA (142648579-142648382) |
|
1-295, gnl|dasNov1|scaffold_4090 (4733-4548) |
|
1-295, gnl|echTel1|scaffold_314990 (7617-7805) |
|
1-295, gnl|hg17|chr17 (5282882-5283073) |
|
1-295, gnl|Hg17|chr17 (5283168-5282882) |
|
1-295, gnl|loxAfr1|scaffold_17339 (13566-13381) |
|
1-295, gnl|mm7|chr11 (71064295-71064480) |
|
1-295, gnl|Mm7|chr11 (71064562-71064295) |
|
1-295, gnl|monDom2|scaffold_223 (346543-346366) |
|
1-295, gnl|oryCun1|scaffold_82184 (9577-9398) |
|
1-295, gnl|panTro1|chr19_random (46503007-46502816) |
|
1-295, gnl|rheMac2|chr16 (5180316-5180507) |
|
1-295, gnl|rn3|chr10 (57899827-57900012) |
|
1-295, gnl|xenTro1|scaffold_227 (1601607-1601805) |
| |
|
752-1139, gnl|bosTau2|chr19 (18537765-18537370) |
|
752-1139, gnl|Hg17|chr17 (5277212-5276817) |
|
752-1139, gnl|Mm7|chr11 (71059822-71059415) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-295, gnl|bosTau2|chr19 (18542752-18542458) |
|
1-295, gnl|canFam2|chr5 (34352015-34351851) |
|
1-295, gnl|danRer3|chrNA (142648579-142648382) |
|
1-295, gnl|dasNov1|scaffold_4090 (4733-4548) |
|
1-295, gnl|echTel1|scaffold_314990 (7617-7805) |
|
1-295, gnl|hg17|chr17 (5282882-5283073) |
|
1-295, gnl|Hg17|chr17 (5283168-5282882) |
|
1-295, gnl|loxAfr1|scaffold_17339 (13566-13381) |
|
1-295, gnl|mm7|chr11 (71064295-71064480) |
|
1-295, gnl|Mm7|chr11 (71064562-71064295) |
|
1-295, gnl|monDom2|scaffold_223 (346543-346366) |
|
1-295, gnl|oryCun1|scaffold_82184 (9577-9398) |
|
1-295, gnl|panTro1|chr19_random (46503007-46502816) |
|
1-295, gnl|rheMac2|chr16 (5180316-5180507) |
|
1-295, gnl|rn3|chr10 (57899827-57900012) |
|
1-295, gnl|xenTro1|scaffold_227 (1601607-1601805) |
| |
|
752-1139, gnl|bosTau2|chr19 (18537765-18537370) |
|
752-1139, gnl|Hg17|chr17 (5277212-5276817) |
|
752-1139, gnl|Mm7|chr11 (71059822-71059415) |
|
cki (3.63516) |
|
che (2.31734) |
|
cje (1.65235) |
|
hea (1.43149) |
|
cst (1.26033) |
|
sto (0.899119) |
|
cut (0.849618) |
|
cov (0.792917) |
|
cbe (0.717703) |
|
vin (0.665115) |
|
cte (0.58548) |
|
ssp (0.542079) |
|
ova (0.516529) |
|
mga (0.480615) |
|
fat (0.442282) |
|
lin (0.436808) |
|
sug (0.381874) |
|
cmu (0.372787) |
|
fce (0.271592) |
|
ebs (0.236602) |
|
mgp (0.230681) |
|
nbm (0.198649) |
|
fcc (0.197785) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
nco (0.161734) |
|
tbr (0.154178) |
|
isp (0.150376) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
thg (0.126791) |
|
ese (0.126502) |
|
bla (0.124347) |
|
tra (0.123092) |
|
eep (0.122564) |
|
cly (0.120642) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
spc (0.113366) |
|
eje (0.0988338) |
|
cki (3.63516) |
|
che (2.31734) |
|
cje (1.65235) |
|
hea (1.43149) |
|
cst (1.26033) |
|
sto (0.899119) |
|
cut (0.849618) |
|
cov (0.792917) |
|
cbe (0.717703) |
|
vin (0.665115) |
|
cte (0.58548) |
|
ssp (0.542079) |
|
ova (0.516529) |
|
mga (0.480615) |
|
fat (0.442282) |
|
lin (0.436808) |
|
sug (0.381874) |
|
cmu (0.372787) |
|
fce (0.271592) |
|
ebs (0.236602) |
|
mgp (0.230681) |
|
nbm (0.198649) |
|
fcc (0.197785) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
nco (0.161734) |
|
tbr (0.154178) |
|
isp (0.150376) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
thg (0.126791) |
|
ese (0.126502) |
|
bla (0.124347) |
|
tra (0.123092) |
|
eep (0.122564) |
|
cly (0.120642) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
spc (0.113366) |
|
eje (0.0988338) |
