Non-Coding RNA Search

Ss1.1-Pig4-TMW8051N03.3

Sequence:


               
               TCTCCGAGGAGCAGCAATGCCTTTCTACTCATACTTTGGTCTTAATGCCATTATCACTAC
AGGGAAAGAAACTCCCAACCCTCAGCGTTCCATCCCTTGGAGCATAGGGATCATCATCTC
CATCTGCTTTTTGGCCTATTCTGGTGTCTCAGCAGCTCTCACCCTCATGGTGCCCTACTA
CCAGATTCATCCTTACAACCCCTTGCCACAGGCTTTTCACCATGTTGGCTGGGATCCTGC
CGGATACTTTGTGGCTGTTGTCATCCTGTGTGCTCTTTTTTACAGCCTCCTGCTTGTCAT
GTTGACCATGTCTCGGTTGATTTGTGCAATGGCAGAGGATGGGCTCCTTTTCCGGGGACT
TGGCAAAATCTATGCCCGAAGAGGCACCCCCCTCGTAGCCATCCTGGTTTCTGCAATTCT
TTCAGGGATCACAGCATTGCTTCTCGAGATCTTTCGTGTTGTGGAACTCATGTCAGTTGG
GGCCCTGTTTGTTTACTTCCTCGTGACTTTTTCTGTCCTGGTCCTCAGGTACCAGCCAGA
CCAGAGCTTCAGCAAGAAGGAGAAAGTAGAGGAGGAAATTGAGATGGAGCCTATAGTTGA
AGGAAATCCTTCACCATCTGTACCTGAAGCAGGAACCTCAAACCCTCTAAAGAGTCTGTG
TAACCCTATCAGCACCACCCCAACTCTGAAATCTGGCCAGATTGTCTATGGATGCACCTT
CCTGCTGGTTCTCCTGCTGACCATCCTGAGCCTGCTTCTGGCCCTGTGGCCCAGCCGCGT
GTTCTCTGGAGACCCCGGGTTCACAGCAGGGGCTGTGCTGCTGCTGCTGCTCATTGCGGG
GATCACTGCCATCATTTGGAGGCAGCCCCAGAACCCCTCTCCTCTTCCCTTCAGGGTCCC
TGCTCTGCCCATGCTCCCAGTGCTGAGCATCTTTGTGAATGTCTACCTGATGATGCAGAT
GTACTCTGTGACCTGGGCCCAGTTTGGCATCTGGAATATCGTGGGACTGGCCATATACTT
TGGATATGGGATCCGACACAGCTTGGAGTAGAAGAGGGATCCACAGCCACCAGCCTCCAG
CCTCCAGCTCCCAGACCCTTCATGAACACACCCCTGGTGCTGAATCCTCTTAACCACAGG
GAATAGATGATGTATGGTTCTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCCGAGGAGCAGCAATGCCTTTCTACTCATACTTTGGTCTTAATGCCATTATCACTAC
AGGGAAAGAAACTCCCAACCCTCAGCGTTCCATCCCTTGGAGCATAGGGATCATCATCTC
CATCTGCTTTTTGGCCTATTCTGGTGTCTCAGCAGCTCTCACCCTCATGGTGCCCTACTA
CCAGATTCATCCTTACAACCCCTTGCCACAGGCTTTTCACCATGTTGGCTGGGATCCTGC
CGGATACTTTGTGGCTGTTGTCATCCTGTGTGCTCTTTTTTACAGCCTCCTGCTTGTCAT
GTTGACCATGTCTCGGTTGATTTGTGCAATGGCAGAGGATGGGCTCCTTTTCCGGGGACT
TGGCAAAATCTATGCCCGAAGAGGCACCCCCCTCGTAGCCATCCTGGTTTCTGCAATTCT
TTCAGGGATCACAGCATTGCTTCTCGAGATCTTTCGTGTTGTGGAACTCATGTCAGTTGG
GGCCCTGTTTGTTTACTTCCTCGTGACTTTTTCTGTCCTGGTCCTCAGGTACCAGCCAGA
CCAGAGCTTCAGCAAGAAGGAGAAAGTAGAGGAGGAAATTGAGATGGAGCCTATAGTTGA
AGGAAATCCTTCACCATCTGTACCTGAAGCAGGAACCTCAAACCCTCTAAAGAGTCTGTG
TAACCCTATCAGCACCACCCCAACTCTGAAATCTGGCCAGATTGTCTATGGATGCACCTT
CCTGCTGGTTCTCCTGCTGACCATCCTGAGCCTGCTTCTGGCCCTGTGGCCCAGCCGCGT
GTTCTCTGGAGACCCCGGGTTCACAGCAGGGGCTGTGCTGCTGCTGCTGCTCATTGCGGG
GATCACTGCCATCATTTGGAGGCAGCCCCAGAACCCCTCTCCTCTTCCCTTCAGGGTCCC
TGCTCTGCCCATGCTCCCAGTGCTGAGCATCTTTGTGAATGTCTACCTGATGATGCAGAT
GTACTCTGTGACCTGGGCCCAGTTTGGCATCTGGAATATCGTGGGACTGGCCATATACTT
TGGATATGGGATCCGACACAGCTTGGAGTAGAAGAGGGATCCACAGCCACCAGCCTCCAG
CCTCCAGCTCCCAGACCCTTCATGAACACACCCCTGGTGCTGAATCCTCTTAACCACAGG
GAATAGATGATGTATGGTTCTTTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               57-277, gnl|bosTau2|chr18 (52915991-52915771)
               

               
               57-277, gnl|Hg17|chrX (69930897-69930677)
               

               
               57-277, gnl|Mm7|chrUn_random (1720149-1720369)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-277, gnl|bosTau2|chr18 (52915991-52915771)
               

               
               57-277, gnl|Hg17|chrX (69930897-69930677)
               

               
               57-277, gnl|Mm7|chrUn_random (1720149-1720369)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               med (0.232504)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

	57-277, gnl\|bosTau2\|chr18 (52915991-52915771)
	57-277, gnl\|Hg17\|chrX (69930897-69930677)
	57-277, gnl\|Mm7\|chrUn_random (1720149-1720369)

	med (0.232504)
	ill (0.175593)
	sin (0.174948)
	cje (0.165235)
	cag (0.151194)
	cst (0.140036)
	ese (0.126502)
	eep (0.122564)
	eje (0.0988338)