Ss1.1-Pig4-TMW8051N11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGATGAAGTCAGTATCAAGTACCTGGTGCAGACAGGTCGTGATGAAGATAAAGTAAAGC ATATTAAAAAGTATCTTCAGGCTGTGGGAATGTTTCGGGATTTCAGTGACTCCTCTCAAG ACCCAGACTTTGCCCAGGTTGTAGAATTAGACCTGAAAACAGTAGTGCCTTGCTGCAGTG GACCCAAAAGACCTCAGGACAAAGTTGCCGTGTCTGACATGAAAAAGGACTTTGAGAGCT GCCTTGGAGCCAAGCAAGGATTTAAAGGATTCCAGATTGCTCCAGACCATCACAACGATC ATAAGACATTTATCTATGATAACAGTGAGTTCACCCTTGCTCATGGTTCTGTGGTAATTG CTGCCATTACGAGCTGCACAAATACCAGTAATCCGTCTGTGATGTTAGGAGCCGGCTTGT TAGCAAAGAAAGCTGTGGATGCTGGCCTGAACGTGAAGCCTTACATCAAAACCAGCCTGT CTCCTGGAAGTGGTGTGGTTACCTACTACCTGCGAGAAAGTGGAGTCATGCCTTACCTGT CTCAGCTTGGGTTCGACGTGGTAGGCTATGGCTGCATGACCTGCATCGGCAACAGCGGGC CCTTACCCGAAGCTGTGGTAGAAGCCATTACGCAGGGGGACCTTGTCGCAGTCGGAGTGC TTTCTGGGAACAGGAATTTTGAAGGGCGAGTCCACCCCAATACCCGGGCCAATTATTTGG CTTCTCCGCCCTTGGTCATAGCTTATGCAATTGCTGGGACCATCCGGATCGACTTTGAGA AAGAGCCCCTGGGCATGAATGCAAAGGGACAACAGGTATTTCTGAAAGATATCTGGCCAA CCAGAGACGAGATCCAGGCGGTGGAACGCCAGTTCGTCATCCCCGGGATGTTTAAGGAGG TCTACCAGAAAATAGAGACTGTGAATGAGAGCTGGAATGCCTTAGAAGCCCCATCAGATA CGCTGTATAGCTGGAATCCCAAATCTACCTACATTAAGTCACCGCCTTTCTTTGAAGACC TGACTTTGGATCTTCAGCCCCCTAAATCTATAGTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGATGAAGTCAGTATCAAGTACCTGGTGCAGACAGGTCGTGATGAAGATAAAGTAAAGC ATATTAAAAAGTATCTTCAGGCTGTGGGAATGTTTCGGGATTTCAGTGACTCCTCTCAAG ACCCAGACTTTGCCCAGGTTGTAGAATTAGACCTGAAAACAGTAGTGCCTTGCTGCAGTG GACCCAAAAGACCTCAGGACAAAGTTGCCGTGTCTGACATGAAAAAGGACTTTGAGAGCT GCCTTGGAGCCAAGCAAGGATTTAAAGGATTCCAGATTGCTCCAGACCATCACAACGATC ATAAGACATTTATCTATGATAACAGTGAGTTCACCCTTGCTCATGGTTCTGTGGTAATTG CTGCCATTACGAGCTGCACAAATACCAGTAATCCGTCTGTGATGTTAGGAGCCGGCTTGT TAGCAAAGAAAGCTGTGGATGCTGGCCTGAACGTGAAGCCTTACATCAAAACCAGCCTGT CTCCTGGAAGTGGTGTGGTTACCTACTACCTGCGAGAAAGTGGAGTCATGCCTTACCTGT CTCAGCTTGGGTTCGACGTGGTAGGCTATGGCTGCATGACCTGCATCGGCAACAGCGGGC CCTTACCCGAAGCTGTGGTAGAAGCCATTACGCAGGGGGACCTTGTCGCAGTCGGAGTGC TTTCTGGGAACAGGAATTTTGAAGGGCGAGTCCACCCCAATACCCGGGCCAATTATTTGG CTTCTCCGCCCTTGGTCATAGCTTATGCAATTGCTGGGACCATCCGGATCGACTTTGAGA AAGAGCCCCTGGGCATGAATGCAAAGGGACAACAGGTATTTCTGAAAGATATCTGGCCAA CCAGAGACGAGATCCAGGCGGTGGAACGCCAGTTCGTCATCCCCGGGATGTTTAAGGAGG TCTACCAGAAAATAGAGACTGTGAATGAGAGCTGGAATGCCTTAGAAGCCCCATCAGATA CGCTGTATAGCTGGAATCCCAAATCTACCTACATTAAGTCACCGCCTTTCTTTGAAGACC TGACTTTGGATCTTCAGCCCCCTAAATCTATAGTGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 35-139, gnl|bosTau2|chr8 (6305127-6305023) | |
| 35-139, gnl|Hg17|chr9 (32413315-32413419) | |
| 35-139, gnl|Mm7|chr4 (40317434-40317538) | |
| 253-415, gnl|bosTau2|chr8 (6302844-6302682) | |
| 253-415, gnl|canFam2|chr11 (52767607-52767805) | |
| 253-415, gnl|danRer3|chr25 (5024930-5024748) | |
| 253-415, gnl|dasNov1|scaffold_9648 (29209-29011) | |
| 253-415, gnl|echTel1|scaffold_316113 (37918-38116) | |
| 253-415, gnl|fr1|chrUn (291449136-291448933) | |
| 253-415, gnl|galGal2|chrZ_random (4648162-4648353) | |
| 253-415, gnl|hg17|chr9 (32415821-32416019) | |
| 253-415, gnl|Hg17|chr9 (32415834-32415996) | |
| 253-415, gnl|loxAfr1|scaffold_13138 (19821-20019) | |
| 253-415, gnl|mm7|chr4 (40319831-40320019) | |
| 253-415, gnl|Mm7|chr4 (40319844-40320006) | |
| 253-415, gnl|monDom2|scaffold_19 (31958046-31958237) | |
| 253-415, gnl|oryCun1|scaffold_169854 (61510-61708) | |
| 253-415, gnl|panTro1|chr11 (32910489-32910687) | |
| 253-415, gnl|rheMac2|chr15 (44800443-44800245) | |
| 253-415, gnl|rn3|chr5 (57575477-57575665) | |
| 253-415, gnl|tetNig1|chrUn_random (114646644-114646812) | |
| 253-415, gnl|xenTro1|scaffold_28 (2099430-2099613) | |
| 630-798, gnl|bosTau2|chr8 (6299238-6299070) | |
| 630-798, gnl|Hg17|chr9 (32420410-32420578) | |
| 630-798, gnl|Mm7|chr4 (40323358-40323526) | |
| 916-1022, gnl|bosTau2|chr8 (6296235-6296129) | |
| 916-1022, gnl|canFam2|chr11 (52775435-52775523) | |
| 916-1022, gnl|danRer3|chr25 (5019228-5019140) | |
| 916-1022, gnl|dasNov1|scaffold_15213 (2608-2521) | |
| 916-1022, gnl|fr1|chrUn (291448040-291447976) | |
| 916-1022, gnl|galGal2|chrZ_random (4655422-4655510) | |
| 916-1022, gnl|hg17|chr9 (32423725-32423813) | |
| 916-1022, gnl|Hg17|chr9 (32423724-32423830) | |
| 916-1022, gnl|loxAfr1|scaffold_13138 (25453-25541) | |
| 916-1022, gnl|mm7|chr4 (40326628-40326716) | |
| 916-1022, gnl|Mm7|chr4 (40326627-40326733) | |
| 916-1022, gnl|monDom2|scaffold_19 (31975499-31975587) | |
| 916-1022, gnl|oryCun1|scaffold_169854 (69930-70018) | |
| 916-1022, gnl|panTro1|chr11 (32918303-32918391) | |
| 916-1022, gnl|rheMac2|chr15 (44792896-44792808) | |
| 916-1022, gnl|rn3|chr5 (57582281-57582369) | |
| 916-1022, gnl|tetNig1|chrUn_random (114647596-114647684) | |
| 916-1022, gnl|xenTro1|scaffold_28 (2102914-2103002) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 35-139, gnl|bosTau2|chr8 (6305127-6305023) | |
| 35-139, gnl|Hg17|chr9 (32413315-32413419) | |
| 35-139, gnl|Mm7|chr4 (40317434-40317538) | |
| 253-415, gnl|bosTau2|chr8 (6302844-6302682) | |
| 253-415, gnl|canFam2|chr11 (52767607-52767805) | |
| 253-415, gnl|danRer3|chr25 (5024930-5024748) | |
| 253-415, gnl|dasNov1|scaffold_9648 (29209-29011) | |
| 253-415, gnl|echTel1|scaffold_316113 (37918-38116) | |
| 253-415, gnl|fr1|chrUn (291449136-291448933) | |
| 253-415, gnl|galGal2|chrZ_random (4648162-4648353) | |
| 253-415, gnl|hg17|chr9 (32415821-32416019) | |
| 253-415, gnl|Hg17|chr9 (32415834-32415996) | |
| 253-415, gnl|loxAfr1|scaffold_13138 (19821-20019) | |
| 253-415, gnl|mm7|chr4 (40319831-40320019) | |
| 253-415, gnl|Mm7|chr4 (40319844-40320006) | |
| 253-415, gnl|monDom2|scaffold_19 (31958046-31958237) | |
| 253-415, gnl|oryCun1|scaffold_169854 (61510-61708) | |
| 253-415, gnl|panTro1|chr11 (32910489-32910687) | |
| 253-415, gnl|rheMac2|chr15 (44800443-44800245) | |
| 253-415, gnl|rn3|chr5 (57575477-57575665) | |
| 253-415, gnl|tetNig1|chrUn_random (114646644-114646812) | |
| 253-415, gnl|xenTro1|scaffold_28 (2099430-2099613) | |
| 630-798, gnl|bosTau2|chr8 (6299238-6299070) | |
| 630-798, gnl|Hg17|chr9 (32420410-32420578) | |
| 630-798, gnl|Mm7|chr4 (40323358-40323526) | |
| 916-1022, gnl|bosTau2|chr8 (6296235-6296129) | |
| 916-1022, gnl|canFam2|chr11 (52775435-52775523) | |
| 916-1022, gnl|danRer3|chr25 (5019228-5019140) | |
| 916-1022, gnl|dasNov1|scaffold_15213 (2608-2521) | |
| 916-1022, gnl|fr1|chrUn (291448040-291447976) | |
| 916-1022, gnl|galGal2|chrZ_random (4655422-4655510) | |
| 916-1022, gnl|hg17|chr9 (32423725-32423813) | |
| 916-1022, gnl|Hg17|chr9 (32423724-32423830) | |
| 916-1022, gnl|loxAfr1|scaffold_13138 (25453-25541) | |
| 916-1022, gnl|mm7|chr4 (40326628-40326716) | |
| 916-1022, gnl|Mm7|chr4 (40326627-40326733) | |
| 916-1022, gnl|monDom2|scaffold_19 (31975499-31975587) | |
| 916-1022, gnl|oryCun1|scaffold_169854 (69930-70018) | |
| 916-1022, gnl|panTro1|chr11 (32918303-32918391) | |
| 916-1022, gnl|rheMac2|chr15 (44792896-44792808) | |
| 916-1022, gnl|rn3|chr5 (57582281-57582369) | |
| 916-1022, gnl|tetNig1|chrUn_random (114647596-114647684) | |
| 916-1022, gnl|xenTro1|scaffold_28 (2102914-2103002) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cov (0.264306) | |
| ton (0.1755) | |
| ute (0.132784) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.264306) | |
| ton (0.1755) | |
| ute (0.132784) | |
| med (0.116252) | |
| cty (0.10408) |