Ss1.1-Pig4-TMW8051N24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGAGCAGAGCGGAGCAGAGCTGCGGAGCCGCCCAGTCCCTCTGTCCATTGTTGTGTCC CGAACGCCCGCTGCAGGAGCAGCCACGAGGTAGAAGCCGGGTGGCATGGCAGCAAGCACA GATGTGGCTGGGCTGGAGGAAAGCTTCCGCAAGTTTGCCATCCATGGTGACCCCAAGGCC AGTGGGCAAGAGATGAATGGCAAGAACTGGGCCAAGCTGTGCAAGGACTGCAAGGTGGCT GACGGAAAAGCTGTGACAGGGACCGATGTCGACATTGTCTTCTCCAAAGTCAAGGGGAAG TCTGCTCGGGTCATCAACTATGAGGAGTTCAAGAAAGCCCTAGAAGAGCTGGCACCCAAG CGATTCAAGGGGAAGAGCAAGGAGGAGGCCTTCGATGCCATCTGTCAGCTGGTGGCAGGC AAGGAACCAGCCAATGTGGGCGTCACTAAAGCAAAAACAGGGGGTGCTGTGGAACGGCTG ACCGACACCAGCAAGTACACAGGATCCCACAAGGAACGCTTTGATGAGAGCGGAAAGGGC AAGGGCATTGCTGGGCGGCAAGACATCCTGGATGACAGTGGCTATGTGAGTGCTTACAAG AATGCAGGCACCTATGATGCCAAGGTGAAGAAGTGAGGCCTGGGAAGGCCCCCCCGCTGC ACCCCAGTGTGACTGCTCCTGCCAGAGGTTTAGGCCTGGTCTTAAGGGGCATGTGGAGCA GAAAGCCCGGTCCCCTCCTTGCTGGACCTGCCAACTAGCGCTTCCTGCTCAGCCCCACGG GGCCAGCCGATGAGGCCTCTGATCCAGACTGCTCTGTGTTCCCTTCCCCTCCTCTCCTCA ACTTCTGTCTGTCTGGGGAGAGTCTGTGTCTATAGCCTCCCCACCCCAACCTAGCCCCGG GCATGGCTAACCCCTGCCTGCTTGCCTCATATTTAAGTTGCTGCTCTGGCCAAGTGCCTA ATTCCTACCCAGACCTCAATAAAGACACCTTTTATACCAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGAGCAGAGCGGAGCAGAGCTGCGGAGCCGCCCAGTCCCTCTGTCCATTGTTGTGTCC CGAACGCCCGCTGCAGGAGCAGCCACGAGGTAGAAGCCGGGTGGCATGGCAGCAAGCACA GATGTGGCTGGGCTGGAGGAAAGCTTCCGCAAGTTTGCCATCCATGGTGACCCCAAGGCC AGTGGGCAAGAGATGAATGGCAAGAACTGGGCCAAGCTGTGCAAGGACTGCAAGGTGGCT GACGGAAAAGCTGTGACAGGGACCGATGTCGACATTGTCTTCTCCAAAGTCAAGGGGAAG TCTGCTCGGGTCATCAACTATGAGGAGTTCAAGAAAGCCCTAGAAGAGCTGGCACCCAAG CGATTCAAGGGGAAGAGCAAGGAGGAGGCCTTCGATGCCATCTGTCAGCTGGTGGCAGGC AAGGAACCAGCCAATGTGGGCGTCACTAAAGCAAAAACAGGGGGTGCTGTGGAACGGCTG ACCGACACCAGCAAGTACACAGGATCCCACAAGGAACGCTTTGATGAGAGCGGAAAGGGC AAGGGCATTGCTGGGCGGCAAGACATCCTGGATGACAGTGGCTATGTGAGTGCTTACAAG AATGCAGGCACCTATGATGCCAAGGTGAAGAAGTGAGGCCTGGGAAGGCCCCCCCGCTGC ACCCCAGTGTGACTGCTCCTGCCAGAGGTTTAGGCCTGGTCTTAAGGGGCATGTGGAGCA GAAAGCCCGGTCCCCTCCTTGCTGGACCTGCCAACTAGCGCTTCCTGCTCAGCCCCACGG GGCCAGCCGATGAGGCCTCTGATCCAGACTGCTCTGTGTTCCCTTCCCCTCCTCTCCTCA ACTTCTGTCTGTCTGGGGAGAGTCTGTGTCTATAGCCTCCCCACCCCAACCTAGCCCCGG GCATGGCTAACCCCTGCCTGCTTGCCTCATATTTAAGTTGCTGCTCTGGCCAAGTGCCTA ATTCCTACCCAGACCTCAATAAAGACACCTTTTATACCAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 99-294, gnl|bosTau2|chr18 (28569289-28569094) | |
| 99-294, gnl|canFam2|chr5 (85018238-85018044) | |
| 99-294, gnl|danRer3|chrUn (79684332-79684138) | |
| 99-294, gnl|dasNov1|scaffold_240425 (3504-3329) | |
| 99-294, gnl|echTel1|scaffold_324425 (38284-38478) | |
| 99-294, gnl|fr1|chrUn (65715158-65715357) | |
| 99-294, gnl|galGal2|chr11 (1177587-1177393) | |
| 99-294, gnl|hg17|chr16 (65982323-65982517) | |
| 99-294, gnl|Hg17|chr16 (65982522-65982327) | |
| 99-294, gnl|loxAfr1|scaffold_136282 (493-299) | |
| 99-294, gnl|mm7|chr8 (104067074-104067268) | |
| 99-294, gnl|Mm7|chr8 (104067273-104067078) | |
| 99-294, gnl|monDom2|scaffold_23 (19463942-19463748) | |
| 99-294, gnl|oryCun1|scaffold_157827 (9271-9075) | |
| 99-294, gnl|panTro1|chr18 (60242493-60242687) | |
| 99-294, gnl|rheMac2|chr20 (65691470-65691664) | |
| 99-294, gnl|rn3|chr19 (35289836-35290030) | |
| 99-294, gnl|tetNig1|chr8 (6816027-6815848) | |
| 99-294, gnl|xenTro1|scaffold_276 (866696-866506) | |
| 448-625, gnl|bosTau2|chr10 (15562173-15562350) | |
| 448-625, gnl|Hg17|chr14 (20569891-20570067) | |
| 448-625, gnl|Mm7|chr14 (47254107-47254283) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 99-294, gnl|bosTau2|chr18 (28569289-28569094) | |
| 99-294, gnl|canFam2|chr5 (85018238-85018044) | |
| 99-294, gnl|danRer3|chrUn (79684332-79684138) | |
| 99-294, gnl|dasNov1|scaffold_240425 (3504-3329) | |
| 99-294, gnl|echTel1|scaffold_324425 (38284-38478) | |
| 99-294, gnl|fr1|chrUn (65715158-65715357) | |
| 99-294, gnl|galGal2|chr11 (1177587-1177393) | |
| 99-294, gnl|hg17|chr16 (65982323-65982517) | |
| 99-294, gnl|Hg17|chr16 (65982522-65982327) | |
| 99-294, gnl|loxAfr1|scaffold_136282 (493-299) | |
| 99-294, gnl|mm7|chr8 (104067074-104067268) | |
| 99-294, gnl|Mm7|chr8 (104067273-104067078) | |
| 99-294, gnl|monDom2|scaffold_23 (19463942-19463748) | |
| 99-294, gnl|oryCun1|scaffold_157827 (9271-9075) | |
| 99-294, gnl|panTro1|chr18 (60242493-60242687) | |
| 99-294, gnl|rheMac2|chr20 (65691470-65691664) | |
| 99-294, gnl|rn3|chr19 (35289836-35290030) | |
| 99-294, gnl|tetNig1|chr8 (6816027-6815848) | |
| 99-294, gnl|xenTro1|scaffold_276 (866696-866506) | |
| 448-625, gnl|bosTau2|chr10 (15562173-15562350) | |
| 448-625, gnl|Hg17|chr14 (20569891-20570067) | |
| 448-625, gnl|Mm7|chr14 (47254107-47254283) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| clu (1.19646) | |
| cga (0.558191) | |
| cov (0.528611) | |
| nep (0.36785) | |
| mcp (0.341297) | |
| cut (0.339847) | |
| hyp (0.285673) | |
| nmm (0.265604) | |
| ese (0.253004) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cly (0.120642) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (1.19646) | |
| cga (0.558191) | |
| cov (0.528611) | |
| nep (0.36785) | |
| mcp (0.341297) | |
| cut (0.339847) | |
| hyp (0.285673) | |
| nmm (0.265604) | |
| ese (0.253004) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cly (0.120642) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |