Ss1.1-Pig4-TMW8051O07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCAGGAAGCGAGCCACTGAGAAAATAAGCGAGGACCTCAGGGCCGCCCTGAATGCCTTC CTGCACCGGACGGGCCAGCACAGCAGCAAGTTCATGCTGGTCCTGGCCAGCAACCAGCCT GAGCAGTTTGACTGGGCCATCAACGACCGCATCGACGAGATCGTGAGCTTCGACCTGCCG CGGCGAGAGGAGCGGGAGCGCCTGGTGAGAATGTATTTTGACAAGCATGTTCTTAAGCCA GCCACAGAAGGAAAGCAGCGCTTGAAGCTGGCCCAGTTTGACTATGGGAAGAAGTGCTCG GAGATCGCAGAGCTGACGGAGGGCATGTCCGGCCGGGAGATCTCCCAGCTCGCCGTGGCG TGGCAGGCCATGGCGTACGCCTCCGAGGACGGAGTCCTCACCGAGGCCATGATGGATGCC CGGGTGCAGGATGCCATCCAGCAGCACAGGCAGAAGATGCAGTGGCTGAAGGCCGAGGGG AGCCAACCACCCGTGAGCGCCTGGACCAAGTGAGCTGGGCCTGGACGTCTGGGGTGCACT GGCCAGGCAGCATCACCAAGAGGAAGGACCCAGGTGCCCAGTCTACCAGCGGCCCTGGGG ACACTGCACAGCTCCCCTGCTCCCAGACTTTTCAGTCTTCGCCAGCCAGAGCCAGGGCAA CACTGGAGGCCTCTGCTCGGACCAGCTGTGCTGTGCACCTTGCTGGTGTGTGTGTTGGGG GGGTTCCTAACTCCTCCAGCCCCCCAGGCTGTGCTGGTGCCGGAGACAGGCTGGGGCCAC TCCAGGACATTCTTGGGAGATGTCTCTCTGAGCCAGGCTCAAGTGGGGAGAAGGCAGTGC CCCCCATGCCCAGCAGCCAGGCTGGTAGCACGGTTTCTGGGGCAGGTGCTGGCTACCGCA GCTGTGACCAGCAGTAAGGGGCGGAAGCCCCCCTGCAGCCTGGTGGGAGCTGGCCACCAC CCACCTGGGGAGAAGTGCCCACCCCGGGCTGTGGCCCTGGAAACCCAGGGGCTGAGAAGC AATCCACTGACCCACCAGCCAGGGACATGAGTGTCCAGGGAACTGCCCAGCCCATAGAAG TTGCAGCTCTCCTTTATCGGAGTTTTGGGATCTTTTTATCCAGAATCTAATAAAAAGTGG CAGTTCAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCAGGAAGCGAGCCACTGAGAAAATAAGCGAGGACCTCAGGGCCGCCCTGAATGCCTTC CTGCACCGGACGGGCCAGCACAGCAGCAAGTTCATGCTGGTCCTGGCCAGCAACCAGCCT GAGCAGTTTGACTGGGCCATCAACGACCGCATCGACGAGATCGTGAGCTTCGACCTGCCG CGGCGAGAGGAGCGGGAGCGCCTGGTGAGAATGTATTTTGACAAGCATGTTCTTAAGCCA GCCACAGAAGGAAAGCAGCGCTTGAAGCTGGCCCAGTTTGACTATGGGAAGAAGTGCTCG GAGATCGCAGAGCTGACGGAGGGCATGTCCGGCCGGGAGATCTCCCAGCTCGCCGTGGCG TGGCAGGCCATGGCGTACGCCTCCGAGGACGGAGTCCTCACCGAGGCCATGATGGATGCC CGGGTGCAGGATGCCATCCAGCAGCACAGGCAGAAGATGCAGTGGCTGAAGGCCGAGGGG AGCCAACCACCCGTGAGCGCCTGGACCAAGTGAGCTGGGCCTGGACGTCTGGGGTGCACT GGCCAGGCAGCATCACCAAGAGGAAGGACCCAGGTGCCCAGTCTACCAGCGGCCCTGGGG ACACTGCACAGCTCCCCTGCTCCCAGACTTTTCAGTCTTCGCCAGCCAGAGCCAGGGCAA CACTGGAGGCCTCTGCTCGGACCAGCTGTGCTGTGCACCTTGCTGGTGTGTGTGTTGGGG GGGTTCCTAACTCCTCCAGCCCCCCAGGCTGTGCTGGTGCCGGAGACAGGCTGGGGCCAC TCCAGGACATTCTTGGGAGATGTCTCTCTGAGCCAGGCTCAAGTGGGGAGAAGGCAGTGC CCCCCATGCCCAGCAGCCAGGCTGGTAGCACGGTTTCTGGGGCAGGTGCTGGCTACCGCA GCTGTGACCAGCAGTAAGGGGCGGAAGCCCCCCTGCAGCCTGGTGGGAGCTGGCCACCAC CCACCTGGGGAGAAGTGCCCACCCCGGGCTGTGGCCCTGGAAACCCAGGGGCTGAGAAGC AATCCACTGACCCACCAGCCAGGGACATGAGTGTCCAGGGAACTGCCCAGCCCATAGAAG TTGCAGCTCTCCTTTATCGGAGTTTTGGGATCTTTTTATCCAGAATCTAATAAAAAGTGG CAGTTCAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 364-482, + strand, RNAz p=0.786693 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 364-482, + strand, RNAz p=0.786693 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 83-258, gnl|bosTau2|chr16 (37811868-37811693) | |
| 83-258, gnl|canFam2|chr5 (59604561-59604746) | |
| 83-258, gnl|canFam2|chr5 (59604746-59604563) | |
| 83-258, gnl|danRer3|chr5 (34078774-34078980) | |
| 83-258, gnl|danRer3|chr5 (34078980-34078774) | |
| 83-258, gnl|dasNov1|scaffold_101928 (3223-3409) | |
| 83-258, gnl|dasNov1|scaffold_101928 (3409-3223) | |
| 83-258, gnl|echTel1|scaffold_273645 (533-345) | |
| 83-258, gnl|echTel1|scaffold_273645 (345-533) | |
| 83-258, gnl|fr1|chrUn (46219181-46219002) | |
| 83-258, gnl|fr1|chrUn (46219002-46219181) | |
| 83-258, gnl|galGal2|chr21 (2058189-2058005) | |
| 83-258, gnl|galGal2|chr21 (2058004-2058189) | |
| 83-258, gnl|hg17|chr1 (1481392-1481577) | |
| 83-258, gnl|Hg17|chr1 (1548333-1548510) | |
| 83-258, gnl|hg17|chr1_random (250781-250966) | |
| 83-258, gnl|mm7|chr4 (154737030-154736845) | |
| 83-258, gnl|mm7|chr4 (154736845-154737030) | |
| 83-258, gnl|Mm7|chr4 (154737030-154736855) | |
| 83-258, gnl|monDom2|scaffold_196 (383213-383398) | |
| 83-258, gnl|monDom2|scaffold_196 (383398-383213) | |
| 83-258, gnl|panTro1|chr1 (1381105-1381290) | |
| 83-258, gnl|panTro1|chr1 (1381290-1381105) | |
| 83-258, gnl|rheMac2|chr1 (4531188-4531373) | |
| 83-258, gnl|rheMac2|chr1 (4531373-4531188) | |
| 83-258, gnl|rn3|chr5 (172616256-172616071) | |
| 83-258, gnl|rn3|chr5 (172616071-172616256) | |
| 83-258, gnl|tetNig1|chr11 (5797825-5798009) | |
| 83-258, gnl|tetNig1|chr11 (5798009-5797825) | |
| 83-258, gnl|xenTro1|scaffold_281 (164624-164809) | |
| 83-258, gnl|xenTro1|scaffold_281 (164809-164624) | |
| 364-584, gnl|bosTau2|chr16 (37804861-37804640) | |
| 364-584, gnl|Hg17|chr1 (1554570-1554801) | |
| 364-584, gnl|Mm7|chr4 (154730897-154730661) | |
| 629-915, gnl|bosTau2|chr16 (37804631-37804353) | |
| 629-915, gnl|Hg17|chr1 (1554802-1555056) | |
| 629-915, gnl|Mm7|chr4 (154730656-154730402) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 83-258, gnl|bosTau2|chr16 (37811868-37811693) | |
| 83-258, gnl|canFam2|chr5 (59604561-59604746) | |
| 83-258, gnl|canFam2|chr5 (59604746-59604563) | |
| 83-258, gnl|danRer3|chr5 (34078774-34078980) | |
| 83-258, gnl|danRer3|chr5 (34078980-34078774) | |
| 83-258, gnl|dasNov1|scaffold_101928 (3223-3409) | |
| 83-258, gnl|dasNov1|scaffold_101928 (3409-3223) | |
| 83-258, gnl|echTel1|scaffold_273645 (533-345) | |
| 83-258, gnl|echTel1|scaffold_273645 (345-533) | |
| 83-258, gnl|fr1|chrUn (46219181-46219002) | |
| 83-258, gnl|fr1|chrUn (46219002-46219181) | |
| 83-258, gnl|galGal2|chr21 (2058189-2058005) | |
| 83-258, gnl|galGal2|chr21 (2058004-2058189) | |
| 83-258, gnl|hg17|chr1 (1481392-1481577) | |
| 83-258, gnl|Hg17|chr1 (1548333-1548510) | |
| 83-258, gnl|hg17|chr1_random (250781-250966) | |
| 83-258, gnl|mm7|chr4 (154737030-154736845) | |
| 83-258, gnl|mm7|chr4 (154736845-154737030) | |
| 83-258, gnl|Mm7|chr4 (154737030-154736855) | |
| 83-258, gnl|monDom2|scaffold_196 (383213-383398) | |
| 83-258, gnl|monDom2|scaffold_196 (383398-383213) | |
| 83-258, gnl|panTro1|chr1 (1381105-1381290) | |
| 83-258, gnl|panTro1|chr1 (1381290-1381105) | |
| 83-258, gnl|rheMac2|chr1 (4531188-4531373) | |
| 83-258, gnl|rheMac2|chr1 (4531373-4531188) | |
| 83-258, gnl|rn3|chr5 (172616256-172616071) | |
| 83-258, gnl|rn3|chr5 (172616071-172616256) | |
| 83-258, gnl|tetNig1|chr11 (5797825-5798009) | |
| 83-258, gnl|tetNig1|chr11 (5798009-5797825) | |
| 83-258, gnl|xenTro1|scaffold_281 (164624-164809) | |
| 83-258, gnl|xenTro1|scaffold_281 (164809-164624) | |
| 364-584, gnl|bosTau2|chr16 (37804861-37804640) | |
| 364-584, gnl|Hg17|chr1 (1554570-1554801) | |
| 364-584, gnl|Mm7|chr4 (154730897-154730661) | |
| 629-915, gnl|bosTau2|chr16 (37804631-37804353) | |
| 629-915, gnl|Hg17|chr1 (1554802-1555056) | |
| 629-915, gnl|Mm7|chr4 (154730656-154730402) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| fcc (0.197785) | |
| nep (0.183925) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| eep (0.122564) | |
| ebs (0.118301) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| nep (0.183925) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| eep (0.122564) | |
| ebs (0.118301) |