Non-Coding RNA Search

Ss1.1-Pig4-TMW8051O08.5

Sequence:


               
               GAGAATGTAATATGAAGTTAATAGAATAATAAGAAAGTGAGGAAGTCAGATATAAAATCA
GAATTGAAACTCACTGTGATAAAGATGATAAGGTGCGGTAAATTTTGATACAGAACATTC
TTTGGCTGAGAAAAACTTGAATAGTGAACAGTCACTGGATTCTGATTCAATATACTTGGG
TTCTAGACTTAGTTTGCTCCTTATAGCCTTGGGCAAGTTACTTTGATGCACTCCTCCCAT
CCCATTTCTGCTATTAAAAAAAGTGAAGTGCATACATTTTTGTTTTGTTTAGTTTTTTTC
CTCCAAAGTTGTTCTCAAAGCCCTGGGAATTCCTTAGAGTTACAATAGGGGGCCAAATGG
GGTTGGGGAGGGCATGAGGAAGAGACCAAGTGATGCTCCACAGAGTAATTCTCTTTCTAC
TATTTTACTTGTGTGGATATCCTGAAATGTTTCCTTCAAAGGAAGTCCCATGGCCAAAAA
TCACTTTGGAAACAACTAGACTGAAACATCTTGAAAGTGCCTTTGGATGCTAAGATTTGA
AGTTCATTAATACTCATCTGTTGTCTTTGTTCTTGCTGTAATTCTCTCAGGATAAGGGAA
ATATTGGCTCAGTTGGGAAGTTACTGTGTAATACAATGGATAATTGTGGCATTGAAGTAC
TTGGCTGTGCCCTGATGTCAACTGCACATGAGATATTTTTCAACTACATGGTAGAAATTA
AAGTACTTTTTTAAATCTCTAACTTGGAGAATCTTAATACAAAGGTAAAATCATACTTTG
TGCTTATCAAAACACAGTTACAGTACTTGCCATTTTGTTGAGCATCTGTCTGTGGCATTT
TATATAAATTGTCTCATTTAACCCTGGGGTGGTCCTGTGAAGTAGCTAGAGTTAGCTGTA
CTGTAAATGAGGAAATTGAGGCTTGCAGAGATTCTGTAGCTTGGCTAAGTTCCCACAGCC
AGTACGTGATGGAGCTGGGGCTTGAAACTAGGATTGCATTTCTAAAATATGTGCATTCTT
TATTACGTTTGCTTGTCTTTCCTAAATTCACAGGAGTTTTGTAGTTTGAAAAAGTCGTCA
GTAGCACCATTACTACTCATGTTTCCCATTAATGAAATCAGCTAACATAGGTAATAGGCA
GCTTTCATTGTTCTTAAGTGCTTTAGATTATGCCAAGGACTATTAATTTTAGGGCAGACA
TGATTTGATCAGACCAAATATATATTCTTTATCTCTTATCTCCTTGTAAATGAGGAATAA
ATGAGACATTTATCAGATGAGAGCAGGATGAGATAACCTGTATGAAAGCTTGGAAATTAT
TCTTGAAAGATAATAAGTATGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAATGTAATATGAAGTTAATAGAATAATAAGAAAGTGAGGAAGTCAGATATAAAATCA
GAATTGAAACTCACTGTGATAAAGATGATAAGGTGCGGTAAATTTTGATACAGAACATTC
TTTGGCTGAGAAAAACTTGAATAGTGAACAGTCACTGGATTCTGATTCAATATACTTGGG
TTCTAGACTTAGTTTGCTCCTTATAGCCTTGGGCAAGTTACTTTGATGCACTCCTCCCAT
CCCATTTCTGCTATTAAAAAAAGTGAAGTGCATACATTTTTGTTTTGTTTAGTTTTTTTC
CTCCAAAGTTGTTCTCAAAGCCCTGGGAATTCCTTAGAGTTACAATAGGGGGCCAAATGG
GGTTGGGGAGGGCATGAGGAAGAGACCAAGTGATGCTCCACAGAGTAATTCTCTTTCTAC
TATTTTACTTGTGTGGATATCCTGAAATGTTTCCTTCAAAGGAAGTCCCATGGCCAAAAA
TCACTTTGGAAACAACTAGACTGAAACATCTTGAAAGTGCCTTTGGATGCTAAGATTTGA
AGTTCATTAATACTCATCTGTTGTCTTTGTTCTTGCTGTAATTCTCTCAGGATAAGGGAA
ATATTGGCTCAGTTGGGAAGTTACTGTGTAATACAATGGATAATTGTGGCATTGAAGTAC
TTGGCTGTGCCCTGATGTCAACTGCACATGAGATATTTTTCAACTACATGGTAGAAATTA
AAGTACTTTTTTAAATCTCTAACTTGGAGAATCTTAATACAAAGGTAAAATCATACTTTG
TGCTTATCAAAACACAGTTACAGTACTTGCCATTTTGTTGAGCATCTGTCTGTGGCATTT
TATATAAATTGTCTCATTTAACCCTGGGGTGGTCCTGTGAAGTAGCTAGAGTTAGCTGTA
CTGTAAATGAGGAAATTGAGGCTTGCAGAGATTCTGTAGCTTGGCTAAGTTCCCACAGCC
AGTACGTGATGGAGCTGGGGCTTGAAACTAGGATTGCATTTCTAAAATATGTGCATTCTT
TATTACGTTTGCTTGTCTTTCCTAAATTCACAGGAGTTTTGTAGTTTGAAAAAGTCGTCA
GTAGCACCATTACTACTCATGTTTCCCATTAATGAAATCAGCTAACATAGGTAATAGGCA
GCTTTCATTGTTCTTAAGTGCTTTAGATTATGCCAAGGACTATTAATTTTAGGGCAGACA
TGATTTGATCAGACCAAATATATATTCTTTATCTCTTATCTCCTTGTAAATGAGGAATAA
ATGAGACATTTATCAGATGAGAGCAGGATGAGATAACCTGTATGAAAGCTTGGAAATTAT
TCTTGAAAGATAATAAGTATGAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               7-1164, gnl|bosTau2|chr21 (9505184-9506338)
               

               
               7-1164, gnl|Hg17|chr15 (83746093-83747253)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1164, gnl|bosTau2|chr21 (9505184-9506338)
               

               
               7-1164, gnl|Hg17|chr15 (83746093-83747253)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	7-1164, gnl\|bosTau2\|chr21 (9505184-9506338)
	7-1164, gnl\|Hg17\|chr15 (83746093-83747253)