Non-Coding RNA Search

Ss1.1-Pig4-TMW8051O18.5

Sequence:


               
               CCAGCTCCAGACAGCTGCCTCTGCCGTCTGTCATCGACCTGGCGGCTGGAGAGGCCCGCG
GGCTCCCACACCTGATTCCTGTCACTCTCCGTGTTTACAGGTCCACACTTCTCTCTGCGG
CTCGTTCACGAGGAGTCATTTTCTGGACGTCTCCATAATGGCATTGAGATGTCAAGCCAC
CTGTCCCCCCCCACCCCCACCCCCGTGGTGATCCCTGCCCAGGAGGTTGCTTTCTTGATT
TATTACACTGTCAGTGATCCCCGAGGAGCCAACAGATGTCAGTAGGAGTTATGTGCAGTG
TCCTGTTGACGGGCTCTGAGCGCTGTGTTCGCGTCCTGAACAGACAGCGTGTGCTTCTCA
GCCGGGGGTCTGCGTCAGGTGCCTGGAGGTTGTGAGTCCCTCAGTCCGGAGTGGGGCCCA
CCTGTAGATTTACACGTGCCGTAGGTGATTCTCCTGTTGACTCCTTGTGAAGAGCCGTTG
TAACAGAATTTGCTTTATGGAGGGGTTCCTGTAGCACATCTTCATAAATGGGTATTTTCT
CCTGCCTCGGAGCAAGTGTAATAACTGTCCAGCTGAGCTCGTACCCAAGTGGGAAGGGTG
TTTGGGGTGATTGCCAGCTGCTTTCTTTTTGAATCGTGTTGATGGCAGGGACCGTGGCGG
ACATTGTGCTGTCCCCATACTGACGAGGATTCTTGTTTCGATGACTGAGCCCGAAACAGA
AGGTTTGTTTATTACTGTCGCTTTACAGTAATACAGAGAAAAGAACGCATTTATAAAAAC
GGTGGCTGACAACTCTGTTCTCAGCTGAATTAGATGTCCAACCAGTTTTGTGCCCCCCCC
CCCCGGCCGCCGCCCCCGCACCACTTTCTCTTTCCCCTTAAAAAAAAACTTTGAAGTCAC
CTTATGGGGTTAAAATAAATATTGGTAATTTATAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCTCCAGACAGCTGCCTCTGCCGTCTGTCATCGACCTGGCGGCTGGAGAGGCCCGCG
GGCTCCCACACCTGATTCCTGTCACTCTCCGTGTTTACAGGTCCACACTTCTCTCTGCGG
CTCGTTCACGAGGAGTCATTTTCTGGACGTCTCCATAATGGCATTGAGATGTCAAGCCAC
CTGTCCCCCCCCACCCCCACCCCCGTGGTGATCCCTGCCCAGGAGGTTGCTTTCTTGATT
TATTACACTGTCAGTGATCCCCGAGGAGCCAACAGATGTCAGTAGGAGTTATGTGCAGTG
TCCTGTTGACGGGCTCTGAGCGCTGTGTTCGCGTCCTGAACAGACAGCGTGTGCTTCTCA
GCCGGGGGTCTGCGTCAGGTGCCTGGAGGTTGTGAGTCCCTCAGTCCGGAGTGGGGCCCA
CCTGTAGATTTACACGTGCCGTAGGTGATTCTCCTGTTGACTCCTTGTGAAGAGCCGTTG
TAACAGAATTTGCTTTATGGAGGGGTTCCTGTAGCACATCTTCATAAATGGGTATTTTCT
CCTGCCTCGGAGCAAGTGTAATAACTGTCCAGCTGAGCTCGTACCCAAGTGGGAAGGGTG
TTTGGGGTGATTGCCAGCTGCTTTCTTTTTGAATCGTGTTGATGGCAGGGACCGTGGCGG
ACATTGTGCTGTCCCCATACTGACGAGGATTCTTGTTTCGATGACTGAGCCCGAAACAGA
AGGTTTGTTTATTACTGTCGCTTTACAGTAATACAGAGAAAAGAACGCATTTATAAAAAC
GGTGGCTGACAACTCTGTTCTCAGCTGAATTAGATGTCCAACCAGTTTTGTGCCCCCCCC
CCCCGGCCGCCGCCCCCGCACCACTTTCTCTTTCCCCTTAAAAAAAAACTTTGAAGTCAC
CTTATGGGGTTAAAATAAATATTGGTAATTTATAAC

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-378, gnl|bosTau2|chr19 (16702606-16702985)
               

               
               1-378, gnl|Hg17|chr17 (367049-366685)
               

               
               1-378, gnl|Mm7|chr11 (76126316-76125942)
               


               
               380-815, gnl|bosTau2|chr19 (16703023-16703474)
               

               
               380-815, gnl|Hg17|chr17 (366355-365166)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-378, gnl|bosTau2|chr19 (16702606-16702985)
               

               
               1-378, gnl|Hg17|chr17 (367049-366685)
               

               
               1-378, gnl|Mm7|chr11 (76126316-76125942)
               


               
               380-815, gnl|bosTau2|chr19 (16703023-16703474)
               

               
               380-815, gnl|Hg17|chr17 (366355-365166)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               elu (0.385356)
               

               
               eye (0.170503)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               eye (0.170503)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

	1-378, gnl\|bosTau2\|chr19 (16702606-16702985)
	1-378, gnl\|Hg17\|chr17 (367049-366685)
	1-378, gnl\|Mm7\|chr11 (76126316-76125942)

	380-815, gnl\|bosTau2\|chr19 (16703023-16703474)
	380-815, gnl\|Hg17\|chr17 (366355-365166)

	elu (0.385356)
	eye (0.170503)
	lnt (0.142308)
	hlv (0.139256)
	cov (0.132153)
	jej (0.0989218)