Non-Coding RNA Search

Ss1.1-Pig4-TMW8051P02.5

Sequence:


               
               CTCTCAGCCCGCGCGCTCGCGCGCAGGGCCACGCGGCCCCTGGGCTCCCTGAGCAAGCGA
TCAGTCAGCAGGTCCCCTTTCGAGGCCCTTGCCAGCGCGGCTGCATGGGCGCCGGAGCAG
CTTCGGGCGGGCGCTGGCTGCCCAGGGGTTGCGCGGTCTTCACCACCTTTCCGGACCTGC
TCTTCATCTTCGAGTCTATCTTTGGAGGCCTGGTGTGGATCCTGATCACCTGGTCCCAAG
TGCCCAACCCCCAGGTTCAGGGCTGGGTCATGTTCGTGTCCGTGTTCTGCTTCATAGCCA
CCACTCTCCTGCTCTTCCTGTATGTAGCTGGTGCCCACAAGACTGGGACTTTCTGGATCA
ACCTGGACGCAGCCTACCACTGTATCGCCTTCCTGTTTTACTTCAGCGCCTCTATCTTCG
AAGCTTTCCTCACCATCTGGCCAGATGAGAGAAACGAGGACAAACAACACATTCAAAACA
TCTCTGCTGGGTCTTTGTTCATTGTCACTCTGCTGTACCTGATCCACGCAGTGTTTTCTT
TAATCAGATGGAAGTCTTTCTAAAGCAACAGAGAACATTCCTGAAAACACATACAATGGT
AACTTATCGGCCCACCTTTCAGCTAACACTTTGGAACTGAGAAATGCTCTCGATGGTGGA
AAAAGAAAAAAAGAAAGAAACCAACACTCTGTTTCTTTGTGGGTGTCATGATGACGCTCC
ATACACCTTTGTGTCAGGATAGGGGGCTTGACATTCTTCACCTCCAGTGAGCTTTCTAGA
GTCATTGCCTAATGAAAGGGAGGGGTGGAGTGGGAAATGGGGAATGTGATCTGAGAGACC
ATGAAACAAGGCTTCCCCTGCTGACCCTTGGACCAAGTTTGGATTACTCTCTACAGGAAT
TTTACACAGGCTTTTCTGTGTGTCCTTCTTGCAATATGTGTCTGCCTCTCCATGGGTATA
ATATATCTTCAAGGATGTTCTACCTGTCATGGAGAATACAACTTGCCCATCAAATATTTG
CAGATATCTGCAGTGGGAGATAATAAATGTTTGAAATATCTTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTCAGCCCGCGCGCTCGCGCGCAGGGCCACGCGGCCCCTGGGCTCCCTGAGCAAGCGA
TCAGTCAGCAGGTCCCCTTTCGAGGCCCTTGCCAGCGCGGCTGCATGGGCGCCGGAGCAG
CTTCGGGCGGGCGCTGGCTGCCCAGGGGTTGCGCGGTCTTCACCACCTTTCCGGACCTGC
TCTTCATCTTCGAGTCTATCTTTGGAGGCCTGGTGTGGATCCTGATCACCTGGTCCCAAG
TGCCCAACCCCCAGGTTCAGGGCTGGGTCATGTTCGTGTCCGTGTTCTGCTTCATAGCCA
CCACTCTCCTGCTCTTCCTGTATGTAGCTGGTGCCCACAAGACTGGGACTTTCTGGATCA
ACCTGGACGCAGCCTACCACTGTATCGCCTTCCTGTTTTACTTCAGCGCCTCTATCTTCG
AAGCTTTCCTCACCATCTGGCCAGATGAGAGAAACGAGGACAAACAACACATTCAAAACA
TCTCTGCTGGGTCTTTGTTCATTGTCACTCTGCTGTACCTGATCCACGCAGTGTTTTCTT
TAATCAGATGGAAGTCTTTCTAAAGCAACAGAGAACATTCCTGAAAACACATACAATGGT
AACTTATCGGCCCACCTTTCAGCTAACACTTTGGAACTGAGAAATGCTCTCGATGGTGGA
AAAAGAAAAAAAGAAAGAAACCAACACTCTGTTTCTTTGTGGGTGTCATGATGACGCTCC
ATACACCTTTGTGTCAGGATAGGGGGCTTGACATTCTTCACCTCCAGTGAGCTTTCTAGA
GTCATTGCCTAATGAAAGGGAGGGGTGGAGTGGGAAATGGGGAATGTGATCTGAGAGACC
ATGAAACAAGGCTTCCCCTGCTGACCCTTGGACCAAGTTTGGATTACTCTCTACAGGAAT
TTTACACAGGCTTTTCTGTGTGTCCTTCTTGCAATATGTGTCTGCCTCTCCATGGGTATA
ATATATCTTCAAGGATGTTCTACCTGTCATGGAGAATACAACTTGCCCATCAAATATTTG
CAGATATCTGCAGTGGGAGATAATAAATGTTTGAAATATCTTAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50979050|ref|NP_001003253.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50979050|ref|NP_001003253.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               78-195, gnl|bosTau2|chr11 (1377154-1377271)
               

               
               78-195, gnl|Hg17|chr2 (95113385-95113502)
               

               
               78-195, gnl|Mm7|chr2 (127397013-127396896)
               


               
               200-366, gnl|bosTau2|chr11 (1386650-1386816)
               

               
               200-366, gnl|Hg17|chr2 (95135580-95135746)
               

               
               200-366, gnl|Mm7|chr2 (127381239-127381073)
               


               
               485-1067, gnl|bosTau2|chr11 (1907658-1907073)
               

               
               485-1067, gnl|Hg17|chr2 (95140995-95141595)
               

               
               485-1067, gnl|Mm7|chr2 (127375912-127375319)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-195, gnl|bosTau2|chr11 (1377154-1377271)
               

               
               78-195, gnl|Hg17|chr2 (95113385-95113502)
               

               
               78-195, gnl|Mm7|chr2 (127397013-127396896)
               


               
               200-366, gnl|bosTau2|chr11 (1386650-1386816)
               

               
               200-366, gnl|Hg17|chr2 (95135580-95135746)
               

               
               200-366, gnl|Mm7|chr2 (127381239-127381073)
               


               
               485-1067, gnl|bosTau2|chr11 (1907658-1907073)
               

               
               485-1067, gnl|Hg17|chr2 (95140995-95141595)
               

               
               485-1067, gnl|Mm7|chr2 (127375912-127375319)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nbm (0.794597)
               

               
               eli (0.303628)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.794597)
               

               
               eli (0.303628)

	78-195, gnl\|bosTau2\|chr11 (1377154-1377271)
	78-195, gnl\|Hg17\|chr2 (95113385-95113502)
	78-195, gnl\|Mm7\|chr2 (127397013-127396896)

	200-366, gnl\|bosTau2\|chr11 (1386650-1386816)
	200-366, gnl\|Hg17\|chr2 (95135580-95135746)
	200-366, gnl\|Mm7\|chr2 (127381239-127381073)

	485-1067, gnl\|bosTau2\|chr11 (1907658-1907073)
	485-1067, gnl\|Hg17\|chr2 (95140995-95141595)
	485-1067, gnl\|Mm7\|chr2 (127375912-127375319)