Non-Coding RNA Search

Ss1.1-Pig4-TMW8051P05.5

Sequence:


               
               TTTGAAAATGGGAAGTATGTTACTTGTTCATTTGGGTGCTTAATTTGCAAATGTTTTGCT
CCTTTTTTCCAACATAACTGAAAGGCATTTTTCTGGAGAATTCTTTTTTTTTTTCTTTCT
TTCTTTCTTTTTACGGCCACACCTGCAGCATTTGGAAGTTCCCAAGCTAGGAGTCAAATC
AGAGCTGTAGCCATGGCAACACCAGATCCAAGCTGCATCTGAACCCTACTCCACAGCTTG
TGCCAGGTCCTTAACCTACTGAGCCACAATGGGAACTCCTCCTGGAGAATTCTTGATGAG
TGGCTCCCATCCATACACCTGTTAGAAGGCCGGAGGAGGGTCCTTCTCATCTCTTGAGCT
GCCTCTCCTTCAGGTGGAAAAACCAACGCACATGCAGTAGGAAGATGGGTGACTTTTCCA
TGGTTTTTAGAATCTTTTAATAGAACTTTTCTACATAAATTTCTTTAAAAAAAAAGTGTG
TCCTCTCCCCATTCTCTCCCCCTTGCTCAGTCATTCTGAAGTCAGCAGACCACACACGTG
AATGTTCAGAAGGGATTCCAGCTGGTCTATAAGTGAATGTAAGTGTCCCTGAACGTGGAC
CAAAAGAATTCCTGATGTTGAAATTTCTAAAATATTCCAATTCACATTTTAAATGATAAT
ATTTGAGTTTCTACTTCATAAAGTAACTCCAGGGTGCTTATTTTAAGCAAATCCCTTAAG
CTTTTTATTTATTCTCTAAGCAAGTATAATCTTCCTATTGCCAGTTTCCAAGAAACATCA
GGAAATAGGAAAATATAGGGCCAGAGAGTGGTACAAGTGTTAAATTATCAGATTTTTATG
TCTATTATATAAACACCTATAAATCAAGCTAGATTTTAGAGTGTTCTGTATAATTAGTAT
ACTTTGAAAATTACCAATGTGAAAATGATCACTTTGGAGGCAGGGTGGGGATATATTCAC
AGCCAAATAAGCCCATCTGATTGAAGAGAACCAGACTTTGGTTTTTGAAAATTCAGTTGA
TGTTACTATCCCACCAGAAATACAGTGATTGTATACTGGTGCATGCTTGTCCCTAAAAAG
GAATCCTAGGCTATATGCATGTATATGTAACTGGATCACCTTTCTACCTTGTATAGTAGA
AAATTGACAGAACACTGTAAACCAGCTATAATGGAAAAAATAAAAATCATTATAAAATTT
AAAAAACAATAAAAAATAAAAATGAATCCTGTTTTGAAATTGAGTTTTGCTGTTTTTGCA
ATTTCCACCTGAAATCATTTTTGGTACAGCTTGAGAATCTCTATTATGATGAAATTATGT
ATAAAGTATAGTTAAGAACTAGAGCCTTGTAGCAAGTTCCTTCTTAATTTATCTGTTATG
TTTTAGCAGTGTTCACATTTTAGTTTTTCTGTTATCAACTGTGTATGTACTTTGATGCCA
GTATAGGAAACTCCAGTCTTTTTTTTTTCTACTGAAGGTTCTCGGTGATTACATCTCAGG
TATTTCTGAGTATCCTGTTATCTACTAGGAGGAATACCTTCCCTGTGAACTCAGAATTTA
AAATTCTCCTGAATTATGATGATCCCAAATGTGATGTAAATAGCCTTAGGCATGGGTCTT
GGGGAAAAGTTAATGACCATTGTTAAAGTAGCTTTAAAAAAAAAAAAAAATTCTGTACTC
TATGTCCTTGATTTGACCTGAACGAACAAACTTTGGCAAAGGGAGGAAATAAAGGCAGCT
CTCAAGAGCCTATTCTCTAGAAAAGGTGTATTTTATACAGTATTCAAAGCCTGTAATTTT
TTCTGACCATTCTGGTACATAATTAGTACTTGTTGGTAATAATTTTGACTTTTGACATCT
GGACCTAGAGCTCTTAGTAGTCAGTGGCCCACTCCTTTGGGATGCCTGCAAGCCTGTACT
CCACGCACAGCACAGCCGCACCTACATTGAGTGGTTGCATTGCCAGCACAGCTGCCTGGG
AGTGGCATGGGTGCCCTCTGGGGCTGCCAGGGAGATACTGTTGTTTGATATCTGGAGCTT
GACTTTGTCAAACAGCTCTTTGTATACCTACTTTTGCTTTGTCAGATGTAAATCAAATAA
ACATGAGTATCTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGAAAATGGGAAGTATGTTACTTGTTCATTTGGGTGCTTAATTTGCAAATGTTTTGCT
CCTTTTTTCCAACATAACTGAAAGGCATTTTTCTGGAGAATTCTTTTTTTTTTTCTTTCT
TTCTTTCTTTTTACGGCCACACCTGCAGCATTTGGAAGTTCCCAAGCTAGGAGTCAAATC
AGAGCTGTAGCCATGGCAACACCAGATCCAAGCTGCATCTGAACCCTACTCCACAGCTTG
TGCCAGGTCCTTAACCTACTGAGCCACAATGGGAACTCCTCCTGGAGAATTCTTGATGAG
TGGCTCCCATCCATACACCTGTTAGAAGGCCGGAGGAGGGTCCTTCTCATCTCTTGAGCT
GCCTCTCCTTCAGGTGGAAAAACCAACGCACATGCAGTAGGAAGATGGGTGACTTTTCCA
TGGTTTTTAGAATCTTTTAATAGAACTTTTCTACATAAATTTCTTTAAAAAAAAAGTGTG
TCCTCTCCCCATTCTCTCCCCCTTGCTCAGTCATTCTGAAGTCAGCAGACCACACACGTG
AATGTTCAGAAGGGATTCCAGCTGGTCTATAAGTGAATGTAAGTGTCCCTGAACGTGGAC
CAAAAGAATTCCTGATGTTGAAATTTCTAAAATATTCCAATTCACATTTTAAATGATAAT
ATTTGAGTTTCTACTTCATAAAGTAACTCCAGGGTGCTTATTTTAAGCAAATCCCTTAAG
CTTTTTATTTATTCTCTAAGCAAGTATAATCTTCCTATTGCCAGTTTCCAAGAAACATCA
GGAAATAGGAAAATATAGGGCCAGAGAGTGGTACAAGTGTTAAATTATCAGATTTTTATG
TCTATTATATAAACACCTATAAATCAAGCTAGATTTTAGAGTGTTCTGTATAATTAGTAT
ACTTTGAAAATTACCAATGTGAAAATGATCACTTTGGAGGCAGGGTGGGGATATATTCAC
AGCCAAATAAGCCCATCTGATTGAAGAGAACCAGACTTTGGTTTTTGAAAATTCAGTTGA
TGTTACTATCCCACCAGAAATACAGTGATTGTATACTGGTGCATGCTTGTCCCTAAAAAG
GAATCCTAGGCTATATGCATGTATATGTAACTGGATCACCTTTCTACCTTGTATAGTAGA
AAATTGACAGAACACTGTAAACCAGCTATAATGGAAAAAATAAAAATCATTATAAAATTT
AAAAAACAATAAAAAATAAAAATGAATCCTGTTTTGAAATTGAGTTTTGCTGTTTTTGCA
ATTTCCACCTGAAATCATTTTTGGTACAGCTTGAGAATCTCTATTATGATGAAATTATGT
ATAAAGTATAGTTAAGAACTAGAGCCTTGTAGCAAGTTCCTTCTTAATTTATCTGTTATG
TTTTAGCAGTGTTCACATTTTAGTTTTTCTGTTATCAACTGTGTATGTACTTTGATGCCA
GTATAGGAAACTCCAGTCTTTTTTTTTTCTACTGAAGGTTCTCGGTGATTACATCTCAGG
TATTTCTGAGTATCCTGTTATCTACTAGGAGGAATACCTTCCCTGTGAACTCAGAATTTA
AAATTCTCCTGAATTATGATGATCCCAAATGTGATGTAAATAGCCTTAGGCATGGGTCTT
GGGGAAAAGTTAATGACCATTGTTAAAGTAGCTTTAAAAAAAAAAAAAAATTCTGTACTC
TATGTCCTTGATTTGACCTGAACGAACAAACTTTGGCAAAGGGAGGAAATAAAGGCAGCT
CTCAAGAGCCTATTCTCTAGAAAAGGTGTATTTTATACAGTATTCAAAGCCTGTAATTTT
TTCTGACCATTCTGGTACATAATTAGTACTTGTTGGTAATAATTTTGACTTTTGACATCT
GGACCTAGAGCTCTTAGTAGTCAGTGGCCCACTCCTTTGGGATGCCTGCAAGCCTGTACT
CCACGCACAGCACAGCCGCACCTACATTGAGTGGTTGCATTGCCAGCACAGCTGCCTGGG
AGTGGCATGGGTGCCCTCTGGGGCTGCCAGGGAGATACTGTTGTTTGATATCTGGAGCTT
GACTTTGTCAAACAGCTCTTTGTATACCTACTTTTGCTTTGTCAGATGTAAATCAAATAA
ACATGAGTATCTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               302-1087, gnl|bosTau2|chr2 (52478512-52477743)
               

               
               302-1087, gnl|Hg17|chr2 (202069183-202068355)
               

               
               302-1087, gnl|Mm7|chr1 (59153106-59152353)
               


               
               1217-2119, gnl|bosTau2|chr2 (52477756-52476867)
               

               
               1217-2119, gnl|Hg17|chr2 (202068368-202067442)
               

               
               1217-2119, gnl|Mm7|chr1 (59152365-59151543)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               302-1087, gnl|bosTau2|chr2 (52478512-52477743)
               

               
               302-1087, gnl|Hg17|chr2 (202069183-202068355)
               

               
               302-1087, gnl|Mm7|chr1 (59153106-59152353)
               


               
               1217-2119, gnl|bosTau2|chr2 (52477756-52476867)
               

               
               1217-2119, gnl|Hg17|chr2 (202068368-202067442)
               

               
               1217-2119, gnl|Mm7|chr1 (59152365-59151543)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               nbm (0.794597)
               

               
               ute (0.265569)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.794597)
               

               
               ute (0.265569)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	302-1087, gnl\|bosTau2\|chr2 (52478512-52477743)
	302-1087, gnl\|Hg17\|chr2 (202069183-202068355)
	302-1087, gnl\|Mm7\|chr1 (59153106-59152353)

	1217-2119, gnl\|bosTau2\|chr2 (52477756-52476867)
	1217-2119, gnl\|Hg17\|chr2 (202068368-202067442)
	1217-2119, gnl\|Mm7\|chr1 (59152365-59151543)

	nbm (0.794597)
	ute (0.265569)
	cbe (0.239234)
	mgp (0.230681)
	fbs (0.175346)
	mcp (0.170648)
	eye (0.170503)
	nje (0.16592)
	mga (0.160205)
	fat (0.147427)
	ski (0.146735)
	lin (0.145603)
	hyp (0.142837)
	csk (0.140746)
	hlv (0.139256)
	nca (0.136874)
	pla (0.133672)
	ret (0.128733)
	spc (0.113366)
	eje (0.0988338)