Ss1.1-Pig4-TMW8051P06.3
|
ACGTTCACTTGATGAAACATATGAATGACAGGTTTCAAGATGAGAAGAATAAAGAGGTGG
TTCTCATGTGCATTGGTATCACTTCCGGAGTCGGACGGCTGCTTTTCGGCCGGATTGCTG
ATTATGTGCCTGGCGTGAAGAAAGTTTATCTACAGGTCCTCTCCTTTTTTTTCATTGGTC
TGATGTCCATGATGATTCCGCTGTGCAGCATCTTTGGGGCCCTCATTGCTGTCTGTCTCA
TCATGGGTCTCTTCGATGGATGCTTCATTTCCATTATGGCGCCCATTGCCTTCGAGTTAG
TTGGTGCCCAGGATGTCTCCCAAGCCATTGGATTTCTGCTCGGATTCATGTCTATACCCA
TGACTGTGGGCCCACCCATTGCAGGGTTACTCCGTGACAAGTTGGGCTCCTATGATGTGG
CATTCTACCTCGCTGGGATCCCTCCCATTATTGGAGGTGTTGTCCTTTGTTTCATCCCTT
GGCTCCATATTAAGAAGCAAAGAGAGATCAGTAAAACCGCTGGAGAAGAAAAGATGGAGA
AAATGTTGGAGAACCAGAATTCTCTGCTGTCAAGCTCATCTGGAATCTTTAAGAAAGAAT
CTGACTCTGTTATTTAATGTCTTATATACCTCCACCAGACTGGACTTGCTTTCAGAAGTT
TAAGCAAGTTTTCCTTTTATATGAATGGCAAATTTCTTATTTTTTTAATCACATCCTAGG
AATAGCACAATAATTGGGAACTGGAACCCTTATTTACTACAAGAACCATTTTCTGCTACT
GAATAGCTGTCCCATATTTCCGTGAGTCTGAGGGCAGAGACTCAGTTTTCATGGACAAGA
AAACACGTCTCAAAGTCAAATATTGCAAGAATATGAAGCTATCTCAGTAAAAGCAACTTT
GGAAACTGTGAACGCTATTTAGCTTGTACAAATATTTAAAAATACCTCAAGCTATATTGA
AAGGGTTGTGATTCGATTAGGGCTGGGTATATTGTTTGTTATCTCACATGGTGTTTTTAT
TTTTGGTGTTTGTTTTAATTTCTTCTGCTATTTGGAAACTTCTTAAGCTTGGATTCTAGA
TAATAGCAGATCTACTTCCGTCTCAAGTCTATGTTAAAATAAGCTATGGAATTATTAAGT
TATTCCATCTTGCTCCAGTGTCAAGAGACCTTCCTGGAGCAGGTGCTAACAGTATATTCA
GAATCAGTATGTGCAGATGAACAGGATCCTGCTCTTAAGGGCAGATCAGGTCAGAAACCA
GACATTTCTCCCATTGACAATTTTTCCCCTTCAGGTTTGCAGTGTGTTCTATTCAAGTAA
CCAGAAACACCCCAAATTTCTGAATTTGTTTAAATTATAACAATAAAGTAAAACAGAATA
ATTAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACGTTCACTTGATGAAACATATGAATGACAGGTTTCAAGATGAGAAGAATAAAGAGGTGG
TTCTCATGTGCATTGGTATCACTTCCGGAGTCGGACGGCTGCTTTTCGGCCGGATTGCTG
ATTATGTGCCTGGCGTGAAGAAAGTTTATCTACAGGTCCTCTCCTTTTTTTTCATTGGTC
TGATGTCCATGATGATTCCGCTGTGCAGCATCTTTGGGGCCCTCATTGCTGTCTGTCTCA
TCATGGGTCTCTTCGATGGATGCTTCATTTCCATTATGGCGCCCATTGCCTTCGAGTTAG
TTGGTGCCCAGGATGTCTCCCAAGCCATTGGATTTCTGCTCGGATTCATGTCTATACCCA
TGACTGTGGGCCCACCCATTGCAGGGTTACTCCGTGACAAGTTGGGCTCCTATGATGTGG
CATTCTACCTCGCTGGGATCCCTCCCATTATTGGAGGTGTTGTCCTTTGTTTCATCCCTT
GGCTCCATATTAAGAAGCAAAGAGAGATCAGTAAAACCGCTGGAGAAGAAAAGATGGAGA
AAATGTTGGAGAACCAGAATTCTCTGCTGTCAAGCTCATCTGGAATCTTTAAGAAAGAAT
CTGACTCTGTTATTTAATGTCTTATATACCTCCACCAGACTGGACTTGCTTTCAGAAGTT
TAAGCAAGTTTTCCTTTTATATGAATGGCAAATTTCTTATTTTTTTAATCACATCCTAGG
AATAGCACAATAATTGGGAACTGGAACCCTTATTTACTACAAGAACCATTTTCTGCTACT
GAATAGCTGTCCCATATTTCCGTGAGTCTGAGGGCAGAGACTCAGTTTTCATGGACAAGA
AAACACGTCTCAAAGTCAAATATTGCAAGAATATGAAGCTATCTCAGTAAAAGCAACTTT
GGAAACTGTGAACGCTATTTAGCTTGTACAAATATTTAAAAATACCTCAAGCTATATTGA
AAGGGTTGTGATTCGATTAGGGCTGGGTATATTGTTTGTTATCTCACATGGTGTTTTTAT
TTTTGGTGTTTGTTTTAATTTCTTCTGCTATTTGGAAACTTCTTAAGCTTGGATTCTAGA
TAATAGCAGATCTACTTCCGTCTCAAGTCTATGTTAAAATAAGCTATGGAATTATTAAGT
TATTCCATCTTGCTCCAGTGTCAAGAGACCTTCCTGGAGCAGGTGCTAACAGTATATTCA
GAATCAGTATGTGCAGATGAACAGGATCCTGCTCTTAAGGGCAGATCAGGTCAGAAACCA
GACATTTCTCCCATTGACAATTTTTCCCCTTCAGGTTTGCAGTGTGTTCTATTCAAGTAA
CCAGAAACACCCCAAATTTCTGAATTTGTTTAAATTATAACAATAAAGTAAAACAGAATA
ATTAAAAAAAAA
|
|
gi|55664356|emb|CAH73735.1| |
Protein identifier
|
gi|55664356|emb|CAH73735.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
11-170, gnl|bosTau2|chr9 (20373624-20373465) |
|
11-170, gnl|canFam2|chr12 (70741190-70741399) |
|
11-170, gnl|danRer3|chr9 (6441876-6442037) |
|
11-170, gnl|dasNov1|scaffold_68964 (4772-4565) |
|
11-170, gnl|echTel1|scaffold_220881 (494-278) |
|
11-170, gnl|fr1|chrUn (237575353-237575157) |
|
11-170, gnl|galGal2|chr3 (64620914-64620714) |
|
11-170, gnl|hg17|chr6 (111634454-111634663) |
|
11-170, gnl|Hg17|chr6 (111634487-111634641) |
|
11-170, gnl|loxAfr1|scaffold_96062 (626-834) |
|
11-170, gnl|mm7|chr10 (39843833-39843627) |
|
11-170, gnl|Mm7|chr10 (39843798-39843647) |
|
11-170, gnl|monDom2|scaffold_0 (108639165-108638955) |
|
11-170, gnl|panTro1|chr5 (113981104-113981313) |
|
11-170, gnl|rheMac2|chr4 (152720214-152720008) |
|
11-170, gnl|rn3|chr20 (44248757-44248553) |
|
11-170, gnl|tetNig1|chrUn_random (99888136-99887952) |
|
11-170, gnl|xenTro1|scaffold_174 (715276-715471) |
| |
|
375-1373, gnl|bosTau2|chr9 (20362630-20361603) |
|
375-1373, gnl|Hg17|chr6 (111649889-111650907) |
|
375-1373, gnl|Mm7|chr10 (39824591-39823652) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
11-170, gnl|bosTau2|chr9 (20373624-20373465) |
|
11-170, gnl|canFam2|chr12 (70741190-70741399) |
|
11-170, gnl|danRer3|chr9 (6441876-6442037) |
|
11-170, gnl|dasNov1|scaffold_68964 (4772-4565) |
|
11-170, gnl|echTel1|scaffold_220881 (494-278) |
|
11-170, gnl|fr1|chrUn (237575353-237575157) |
|
11-170, gnl|galGal2|chr3 (64620914-64620714) |
|
11-170, gnl|hg17|chr6 (111634454-111634663) |
|
11-170, gnl|Hg17|chr6 (111634487-111634641) |
|
11-170, gnl|loxAfr1|scaffold_96062 (626-834) |
|
11-170, gnl|mm7|chr10 (39843833-39843627) |
|
11-170, gnl|Mm7|chr10 (39843798-39843647) |
|
11-170, gnl|monDom2|scaffold_0 (108639165-108638955) |
|
11-170, gnl|panTro1|chr5 (113981104-113981313) |
|
11-170, gnl|rheMac2|chr4 (152720214-152720008) |
|
11-170, gnl|rn3|chr20 (44248757-44248553) |
|
11-170, gnl|tetNig1|chrUn_random (99888136-99887952) |
|
11-170, gnl|xenTro1|scaffold_174 (715276-715471) |
| |
|
375-1373, gnl|bosTau2|chr9 (20362630-20361603) |
|
375-1373, gnl|Hg17|chr6 (111649889-111650907) |
|
375-1373, gnl|Mm7|chr10 (39824591-39823652) |
|
spl (0.286369) |
|
csk (0.281492) |
|
ssp (0.271039) |
|
col (0.195008) |
|
sin (0.174948) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
lin (0.145603) |
|
pla (0.133672) |
|
kid (0.129735) |
|
thg (0.126791) |
|
eep (0.122564) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
|
spl (0.286369) |
|
csk (0.281492) |
|
ssp (0.271039) |
|
col (0.195008) |
|
sin (0.174948) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
lin (0.145603) |
|
pla (0.133672) |
|
kid (0.129735) |
|
thg (0.126791) |
|
eep (0.122564) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
