Ss1.1-Pig4-TMW8051P07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCCTTGGGCATAGAGGACATTTCACCTAGCATGTCACCAGATGAGAAATCCTTCACCC GTATTGTGCCCCGAGTGCCAGACTCCACCAGACGAGCAGACACGGGTGCTGGTACTTTGC GTCGAAGTGACTCTCCAGAGATTCCTTTCCAGACTGCTGCTGGCCCTTCTGATGGCTTAG ATGCCTCTTCTCCAGGGAACAGCTTTGTAGGGCTCCGTGTTGTAGCCAAGTGGTCGTCTA ATGGCTATTTTTACTCTGGGAAAATCACACGAGATGTCGGAGCTGGGAAGTATAAATTGC TCTTTGATGATGGGTACGAGTGTGATGTGTTGGGCAAAGACATTCTGCTGTGTGACCCCA TCCCGCTGGATACGGAAGTGACAGCCCTCTCGGAGGATGAGTATTTCAGTGCAGGAGTGG TGAAAGGGCATAGGAAGGAGTCTGGAGAGCTGTACTACAGCATTGAGAAAGAAGGCCAAA GGAAGTGGTATAAACGAATGGCTGTCATCTTATCCTTGGAACAAGGAAACAGACTGAGAG AGCAGTATGGCCTAGGCCCATATGAGGCAGTAACGCCCCTCACCAAGGCAGCAGATATCA GCTTAGACAATTTAGTGGAAGGGAAACGGAAACGGCGAAGTAACATCAGCTCCCCAGCCA CCCCTCCTGCCTCCAGCAGCAGCAGCACAACCCCTACCCGAAAGATCACAGAAAGTCCTC GTGCTTCCACGGGCGTACCCTCCGGCAAAAGAAAACTTATCACTTCTGAAGAGGAACGTT CCCCTGCCAAGCGAGGTCGGAAATCTGCCACTGTGAAACCTGGTGCAGTGGGGGCAGGAG AGTTTGTGAGCCCCTGCGAGAGTGGAGACAACGTGGGTGAACCCTCTGCCCTGGAAGAGC AGAGAGGGCCTCTGCCCCTCAACAAGACCTTATTTCTGGGCTATGCCTTTCTCCTCACCA TGGCCACAACAAGTGACAAGTTGGCCAGCCGCTCCAAACTGTCAGATGGTCCTCCAGGAA GCAGCGAGGAAGAGGAGGAATTTTTAGAAATTCCTCCTTTCAACAAGCAGTACACAGAGT CCCAGCTTCGAGCAGGAGCTGGCTATATTCTTGAAGACTTCAATGAAGCCCAGTGTAACA CAGCCTACCAGTGTCTCCTAATTGCGGATCAGCATTGTCGAACCCGGAAGTACTTCCTGT GCCTTGCCAGCGGGATTCCTTGTGTGTCTCATGTCTGGGTCCATGACAGTTGCCATGCCA ACCAGCTCCAGAATTACCGTAATTATCTGCTGCCAGCTGGGTACAGCCTTGAGGAGCAGA GAGTTCTAGATTGGCAACCCCGTGAAAACCCTTTCCAGAATCTGAAGGTACTCTTGGTAT CAGACCAACAGCAGAACTTCCTGGAGCTCTGGTCTGAGATTCTCATGACTGGAGGGGCAG CCTCTGTGAAGCAGCACCATTCAAGTGCCCATAACAAAGATATTGCTTTAGGGGTATTTG ACGTGGTGGTGACGGACCCCTCGTGCCCAGCCTCGGTGCTGAAGTGTGCTGAAGCATTGC AGCTGCCAGTGGTGTCACAAGAGTGGGTGATCCAGTGCCTCATTGTTGGGGAGAGAATTG GATTCAAGCAGCATCCAAAATATAAACATGATTATGTTTCTCACTAAGGATACTTGGTCT TACCGGTTTTATTCCCTTCTGTTGTAGAAACTGTGTTTTAATCAGGTTTTAAATGTGTCT TGTGTGTAACTGGATTCCTTGCATGGATCTTGTATATAGTTTTATTTGCTGGACTTTTAT GATAAAATAAATGTTGACTCTCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCCTTGGGCATAGAGGACATTTCACCTAGCATGTCACCAGATGAGAAATCCTTCACCC GTATTGTGCCCCGAGTGCCAGACTCCACCAGACGAGCAGACACGGGTGCTGGTACTTTGC GTCGAAGTGACTCTCCAGAGATTCCTTTCCAGACTGCTGCTGGCCCTTCTGATGGCTTAG ATGCCTCTTCTCCAGGGAACAGCTTTGTAGGGCTCCGTGTTGTAGCCAAGTGGTCGTCTA ATGGCTATTTTTACTCTGGGAAAATCACACGAGATGTCGGAGCTGGGAAGTATAAATTGC TCTTTGATGATGGGTACGAGTGTGATGTGTTGGGCAAAGACATTCTGCTGTGTGACCCCA TCCCGCTGGATACGGAAGTGACAGCCCTCTCGGAGGATGAGTATTTCAGTGCAGGAGTGG TGAAAGGGCATAGGAAGGAGTCTGGAGAGCTGTACTACAGCATTGAGAAAGAAGGCCAAA GGAAGTGGTATAAACGAATGGCTGTCATCTTATCCTTGGAACAAGGAAACAGACTGAGAG AGCAGTATGGCCTAGGCCCATATGAGGCAGTAACGCCCCTCACCAAGGCAGCAGATATCA GCTTAGACAATTTAGTGGAAGGGAAACGGAAACGGCGAAGTAACATCAGCTCCCCAGCCA CCCCTCCTGCCTCCAGCAGCAGCAGCACAACCCCTACCCGAAAGATCACAGAAAGTCCTC GTGCTTCCACGGGCGTACCCTCCGGCAAAAGAAAACTTATCACTTCTGAAGAGGAACGTT CCCCTGCCAAGCGAGGTCGGAAATCTGCCACTGTGAAACCTGGTGCAGTGGGGGCAGGAG AGTTTGTGAGCCCCTGCGAGAGTGGAGACAACGTGGGTGAACCCTCTGCCCTGGAAGAGC AGAGAGGGCCTCTGCCCCTCAACAAGACCTTATTTCTGGGCTATGCCTTTCTCCTCACCA TGGCCACAACAAGTGACAAGTTGGCCAGCCGCTCCAAACTGTCAGATGGTCCTCCAGGAA GCAGCGAGGAAGAGGAGGAATTTTTAGAAATTCCTCCTTTCAACAAGCAGTACACAGAGT CCCAGCTTCGAGCAGGAGCTGGCTATATTCTTGAAGACTTCAATGAAGCCCAGTGTAACA CAGCCTACCAGTGTCTCCTAATTGCGGATCAGCATTGTCGAACCCGGAAGTACTTCCTGT GCCTTGCCAGCGGGATTCCTTGTGTGTCTCATGTCTGGGTCCATGACAGTTGCCATGCCA ACCAGCTCCAGAATTACCGTAATTATCTGCTGCCAGCTGGGTACAGCCTTGAGGAGCAGA GAGTTCTAGATTGGCAACCCCGTGAAAACCCTTTCCAGAATCTGAAGGTACTCTTGGTAT CAGACCAACAGCAGAACTTCCTGGAGCTCTGGTCTGAGATTCTCATGACTGGAGGGGCAG CCTCTGTGAAGCAGCACCATTCAAGTGCCCATAACAAAGATATTGCTTTAGGGGTATTTG ACGTGGTGGTGACGGACCCCTCGTGCCCAGCCTCGGTGCTGAAGTGTGCTGAAGCATTGC AGCTGCCAGTGGTGTCACAAGAGTGGGTGATCCAGTGCCTCATTGTTGGGGAGAGAATTG GATTCAAGCAGCATCCAAAATATAAACATGATTATGTTTCTCACTAAGGATACTTGGTCT TACCGGTTTTATTCCCTTCTGTTGTAGAAACTGTGTTTTAATCAGGTTTTAAATGTGTCT TGTGTGTAACTGGATTCCTTGCATGGATCTTGTATATAGTTTTATTTGCTGGACTTTTAT GATAAAATAAATGTTGACTCTCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 819-1677, - strand, RNAz p=0.904766 | |
| 819-910, - strand, RNAz p=0.875505 | |
| 935-1038, - strand, RNAz p=0.591302 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 819-1677, - strand, RNAz p=0.904766 | |
| 819-910, - strand, RNAz p=0.875505 | |
| 935-1038, - strand, RNAz p=0.591302 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-415, gnl|bosTau2|chr21 (34285468-34285054) | |
| 1-415, gnl|Hg17|chr15 (41500208-41499794) | |
| 1-415, gnl|Mm7|chr2 (120948961-120948547) | |
| 819-1038, gnl|bosTau2|chr21 (34280402-34280183) | |
| 819-1038, gnl|canFam2|chr30 (13261952-13262203) | |
| 819-1038, gnl|dasNov1|scaffold_5365 (45765-46018) | |
| 819-1038, gnl|echTel1|scaffold_322287 (129418-129668) | |
| 819-1038, gnl|galGal2|chr10 (20823060-20822822) | |
| 819-1038, gnl|hg17|chr15 (41492593-41492844) | |
| 819-1038, gnl|Hg17|chr15 (41492828-41492609) | |
| 819-1038, gnl|loxAfr1|scaffold_8279 (20856-20605) | |
| 819-1038, gnl|mm7|chr2 (120943376-120943624) | |
| 819-1038, gnl|Mm7|chr2 (120943611-120943392) | |
| 819-1038, gnl|monDom2|scaffold_53 (10673356-10673104) | |
| 819-1038, gnl|oryCun1|scaffold_197873 (11817-12068) | |
| 819-1038, gnl|panTro1|chr16 (41484332-41484583) | |
| 819-1038, gnl|rheMac2|chr7 (21848321-21848573) | |
| 819-1038, gnl|rn3|chr3 (107900577-107900828) | |
| 819-1038, gnl|xenTro1|scaffold_358 (1108531-1108282) | |
| 1130-1334, gnl|bosTau2|chr21 (34276215-34276011) | |
| 1130-1334, gnl|Hg17|chr15 (41488590-41488386) | |
| 1130-1334, gnl|Mm7|chr2 (120940659-120940455) | |
| 1478-1824, gnl|bosTau2|chr21 (34274995-34274649) | |
| 1478-1824, gnl|canFam2|chr30 (13256031-13256266) | |
| 1478-1824, gnl|danRer3|chr7 (43863930-43863774) | |
| 1478-1824, gnl|echTel1|scaffold_322287 (122805-123034) | |
| 1478-1824, gnl|fr1|chrUn (24027660-24027459) | |
| 1478-1824, gnl|galGal2|chr10 (20829736-20829515) | |
| 1478-1824, gnl|hg17|chr15 (41486690-41486927) | |
| 1478-1824, gnl|Hg17|chr15 (41487062-41486716) | |
| 1478-1824, gnl|loxAfr1|scaffold_8279 (26739-26504) | |
| 1478-1824, gnl|mm7|chr2 (120939086-120939323) | |
| 1478-1824, gnl|Mm7|chr2 (120939458-120939112) | |
| 1478-1824, gnl|monDom2|scaffold_53 (10680404-10680168) | |
| 1478-1824, gnl|oryCun1|scaffold_197873 (6610-6846) | |
| 1478-1824, gnl|panTro1|chr16 (41478420-41478657) | |
| 1478-1824, gnl|rheMac2|chr7 (21842076-21842313) | |
| 1478-1824, gnl|rn3|chr3 (107897034-107897271) | |
| 1478-1824, gnl|xenTro1|scaffold_358 (1112219-1111950) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-415, gnl|bosTau2|chr21 (34285468-34285054) | |
| 1-415, gnl|Hg17|chr15 (41500208-41499794) | |
| 1-415, gnl|Mm7|chr2 (120948961-120948547) | |
| 819-1038, gnl|bosTau2|chr21 (34280402-34280183) | |
| 819-1038, gnl|canFam2|chr30 (13261952-13262203) | |
| 819-1038, gnl|dasNov1|scaffold_5365 (45765-46018) | |
| 819-1038, gnl|echTel1|scaffold_322287 (129418-129668) | |
| 819-1038, gnl|galGal2|chr10 (20823060-20822822) | |
| 819-1038, gnl|hg17|chr15 (41492593-41492844) | |
| 819-1038, gnl|Hg17|chr15 (41492828-41492609) | |
| 819-1038, gnl|loxAfr1|scaffold_8279 (20856-20605) | |
| 819-1038, gnl|mm7|chr2 (120943376-120943624) | |
| 819-1038, gnl|Mm7|chr2 (120943611-120943392) | |
| 819-1038, gnl|monDom2|scaffold_53 (10673356-10673104) | |
| 819-1038, gnl|oryCun1|scaffold_197873 (11817-12068) | |
| 819-1038, gnl|panTro1|chr16 (41484332-41484583) | |
| 819-1038, gnl|rheMac2|chr7 (21848321-21848573) | |
| 819-1038, gnl|rn3|chr3 (107900577-107900828) | |
| 819-1038, gnl|xenTro1|scaffold_358 (1108531-1108282) | |
| 1130-1334, gnl|bosTau2|chr21 (34276215-34276011) | |
| 1130-1334, gnl|Hg17|chr15 (41488590-41488386) | |
| 1130-1334, gnl|Mm7|chr2 (120940659-120940455) | |
| 1478-1824, gnl|bosTau2|chr21 (34274995-34274649) | |
| 1478-1824, gnl|canFam2|chr30 (13256031-13256266) | |
| 1478-1824, gnl|danRer3|chr7 (43863930-43863774) | |
| 1478-1824, gnl|echTel1|scaffold_322287 (122805-123034) | |
| 1478-1824, gnl|fr1|chrUn (24027660-24027459) | |
| 1478-1824, gnl|galGal2|chr10 (20829736-20829515) | |
| 1478-1824, gnl|hg17|chr15 (41486690-41486927) | |
| 1478-1824, gnl|Hg17|chr15 (41487062-41486716) | |
| 1478-1824, gnl|loxAfr1|scaffold_8279 (26739-26504) | |
| 1478-1824, gnl|mm7|chr2 (120939086-120939323) | |
| 1478-1824, gnl|Mm7|chr2 (120939458-120939112) | |
| 1478-1824, gnl|monDom2|scaffold_53 (10680404-10680168) | |
| 1478-1824, gnl|oryCun1|scaffold_197873 (6610-6846) | |
| 1478-1824, gnl|panTro1|chr16 (41478420-41478657) | |
| 1478-1824, gnl|rheMac2|chr7 (21842076-21842313) | |
| 1478-1824, gnl|rn3|chr3 (107897034-107897271) | |
| 1478-1824, gnl|xenTro1|scaffold_358 (1112219-1111950) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| thg (0.380373) | |
| cte (0.29274) | |
| ste (0.270416) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| tes (0.207814) | |
| sto (0.179824) | |
| ski (0.146735) | |
| che (0.136314) | |
| ssp (0.13552) | |
| bla (0.124347) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.380373) | |
| cte (0.29274) | |
| ste (0.270416) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| tes (0.207814) | |
| sto (0.179824) | |
| ski (0.146735) | |
| che (0.136314) | |
| ssp (0.13552) | |
| bla (0.124347) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) |