Non-Coding RNA Search

Ss1.1-Pig4-TMW8051P10.5

Sequence:


               
               TATAAAATTATAGGAGTTCCATTTAAATATAGTTCAAACTATATTTATAGCTTGTATGTG
GCCCTCTGTTTGGAGGATATTGATTTCATGTAGGCTCTCTAAATGCAGCATTATGTTCCT
AATGTTAAGAACAGAAGACTGTATTTTTAAAGTTACAGATTTGTATATAGAACTAAGACA
TTGTTGTAATGTCTATGTAACTTGTGGGGAGCTAGGAACAAAAAGAGGAATCAATTAAAT
AGGACCTTCTACAAATTGTTAATTTCATAAACTTTGCTTCTTTTTAAGTTATTATGATTC
CTTTTAGTTACTGAGTTTTATTTTGAAGATATTTAAATATTGCACTTGTACAAATAGTAT
GATAAATGCACAGATTATTACAGTGAATTCTTTTTTAAGCTGGGGTATTTGAAATGATAA
CTTCTGGTTGAGTATGTCAAGGCTGCACCAGAATTTTCACAGATTTATTGTTGTTTGCAA
ATTCTTAACTAATTGAAGATGTAAAGGAGTCAATGCAAATGATTTTTAATCTTTTTTTAT
TATCTTTTCAGCAATTTATATTTTTTGTGATTTTATGCAACCGTATTTTTACTTTGTCTT
GACAACTGAAAGATGTATAAGGTTTTTGCCAGAAATGTACTGTATACATAGTTTTAAATA
TAACAGATTTTACTGATATGTGAAATTTTTGCCATTAAAATAAATGATTTCTCACTGAGA
GGAACTTTTCTACCAGGTTGGGGGATATGGGAGCTTAATATATCATATCTAATTTAAAAT
AATTTCACCGAAATAAACTCCATTGCTTTTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATAAAATTATAGGAGTTCCATTTAAATATAGTTCAAACTATATTTATAGCTTGTATGTG
GCCCTCTGTTTGGAGGATATTGATTTCATGTAGGCTCTCTAAATGCAGCATTATGTTCCT
AATGTTAAGAACAGAAGACTGTATTTTTAAAGTTACAGATTTGTATATAGAACTAAGACA
TTGTTGTAATGTCTATGTAACTTGTGGGGAGCTAGGAACAAAAAGAGGAATCAATTAAAT
AGGACCTTCTACAAATTGTTAATTTCATAAACTTTGCTTCTTTTTAAGTTATTATGATTC
CTTTTAGTTACTGAGTTTTATTTTGAAGATATTTAAATATTGCACTTGTACAAATAGTAT
GATAAATGCACAGATTATTACAGTGAATTCTTTTTTAAGCTGGGGTATTTGAAATGATAA
CTTCTGGTTGAGTATGTCAAGGCTGCACCAGAATTTTCACAGATTTATTGTTGTTTGCAA
ATTCTTAACTAATTGAAGATGTAAAGGAGTCAATGCAAATGATTTTTAATCTTTTTTTAT
TATCTTTTCAGCAATTTATATTTTTTGTGATTTTATGCAACCGTATTTTTACTTTGTCTT
GACAACTGAAAGATGTATAAGGTTTTTGCCAGAAATGTACTGTATACATAGTTTTAAATA
TAACAGATTTTACTGATATGTGAAATTTTTGCCATTAAAATAAATGATTTCTCACTGAGA
GGAACTTTTCTACCAGGTTGGGGGATATGGGAGCTTAATATATCATATCTAATTTAAAAT
AATTTCACCGAAATAAACTCCATTGCTTTTAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-811, gnl|bosTau2|chr20 (19914397-19913604)
               

               
               1-811, gnl|Hg17|chr5 (40796492-40795686)
               

               
               1-811, gnl|Mm7|chr15 (5005601-5006398)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-811, gnl|bosTau2|chr20 (19914397-19913604)
               

               
               1-811, gnl|Hg17|chr5 (40796492-40795686)
               

               
               1-811, gnl|Mm7|chr15 (5005601-5006398)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               col (0.195008)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               tra (0.123092)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               tra (0.123092)

	1-811, gnl\|bosTau2\|chr20 (19914397-19913604)
	1-811, gnl\|Hg17\|chr5 (40796492-40795686)
	1-811, gnl\|Mm7\|chr15 (5005601-5006398)

	col (0.195008)
	fco (0.157208)
	liv (0.146284)
	lin (0.145603)
	tra (0.123092)