Ss1.1-Pig4-TMW8051P14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGAGCGCGGAGGTGAAACCATCGAGAGGGAGGGCCAGAGAGTCATGGCGGTTTAAGGAA TCTCCAGACCGAGACATCTGGTGGGAAACAGGTCTTGAAAATGCCTCGGGGCTTGTAAGG TTCAGTGTTTTCCTTTCAAGATGCCCTTCTCAGACTTTGTTCTGGCCCTGAAGGACAACC CCTACTTTGGGGCTGGATTTGGGCTGGTGGGTGTGGGCACAGCCCTGGCCTTGGCCCGGA AGGGCGCCCAGCTGGGCCTGGTGGCATTCCGGCGCCATTATATGATCACACTGGAAGTCC CTGCTCGAGACAGGAGCTACGCCTGGTTGCTTAGCTGGCTCACCCGCCACAGTGCCCGCA CTCAGCACCTCAGTGTCGAGACTTCATACCTTCAGCACGAGAGTGGTCGCATCTCCACTA AGTTTGAATTTGTCCCTAGCCCTGGAAACCACTTTATCTGGTACCAGGGGAAATGGATCC GGGTGGAAAGGAGCCGAGAGATGCAGATGATAGACCTGCAGACGGGGACTCCTTGGGAGT CTGTTACCTTCACGGCTCTGGGCACTGACCGAAAGATTTTCTTCAACATCCTGGAAGAAG CTCGAGAACTAGCCTTGCAGCAAGAGGAAGGGAAGACAGTGATGTACACAGCTGTGGGCT CTGAATGGCGCCCCTTCGGCTATCCGCGCCGCCGGCGGCCACTGAATTCTGTGGTTCTAG AACAGGGTCTGGCTGACCGAATTGTCAGAGACATCCGGGAATTCATCGATAACCCCAAGT GGTACACTGACAGAGGCATTCCCTACAGACGCGGCTACCTGCTTTACGGCCCCCCTGGTT GCGGAAAGAGCAGTTTTATCACAGCCCTGGCTGGGGAGCTGCAGCACAGCATCTGCCTGC TGAGTCTCACAGACTCCAGCCTCTCGGATGACCGGCTCAACCACCTGCTGAGCGTGGCCC CGCAGCAGAGCCTGGTGCTCCTGGAGGATGTGGATGCTGCCTTTCTCAGCCGGGACCTGG CTGCGGAGAACCCAGTAAAGTACCAAGGTCTAGGTCGTCTCACCTTCAGTGGACTGCTCA ACGCCTTAGATGGCGTGGCGTCCACTGAGGCACGCATTGTGTTCATGACCACCAACCACG TTGACAGGCTCGACCCTGCCCTGATACGCCCCGGGCGAGTAGACCTGAAGGAGTATGTGG GCCACTGCTCACGCTGGCAGCTGACCCAGATGTTCCAGAGGTTCTATCCCGGGCAGGCAC CTTCCCTGGCCGAGAGCTTTGCAGATCGTGCCCTTCAAGCTACGACTCAGATCAGTCCTG CCCAGGTGCAGGGCTACTTCATGCTGTATAAAAATGACCCCGAGGGGGCAGTGCGTCATG CTGACTCTCTGAGGAGGTGACCACCAGGACGTGCCCCGCTTTCTCCTCCTCTCGGGGATC AATAAACTCCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGAGCGCGGAGGTGAAACCATCGAGAGGGAGGGCCAGAGAGTCATGGCGGTTTAAGGAA TCTCCAGACCGAGACATCTGGTGGGAAACAGGTCTTGAAAATGCCTCGGGGCTTGTAAGG TTCAGTGTTTTCCTTTCAAGATGCCCTTCTCAGACTTTGTTCTGGCCCTGAAGGACAACC CCTACTTTGGGGCTGGATTTGGGCTGGTGGGTGTGGGCACAGCCCTGGCCTTGGCCCGGA AGGGCGCCCAGCTGGGCCTGGTGGCATTCCGGCGCCATTATATGATCACACTGGAAGTCC CTGCTCGAGACAGGAGCTACGCCTGGTTGCTTAGCTGGCTCACCCGCCACAGTGCCCGCA CTCAGCACCTCAGTGTCGAGACTTCATACCTTCAGCACGAGAGTGGTCGCATCTCCACTA AGTTTGAATTTGTCCCTAGCCCTGGAAACCACTTTATCTGGTACCAGGGGAAATGGATCC GGGTGGAAAGGAGCCGAGAGATGCAGATGATAGACCTGCAGACGGGGACTCCTTGGGAGT CTGTTACCTTCACGGCTCTGGGCACTGACCGAAAGATTTTCTTCAACATCCTGGAAGAAG CTCGAGAACTAGCCTTGCAGCAAGAGGAAGGGAAGACAGTGATGTACACAGCTGTGGGCT CTGAATGGCGCCCCTTCGGCTATCCGCGCCGCCGGCGGCCACTGAATTCTGTGGTTCTAG AACAGGGTCTGGCTGACCGAATTGTCAGAGACATCCGGGAATTCATCGATAACCCCAAGT GGTACACTGACAGAGGCATTCCCTACAGACGCGGCTACCTGCTTTACGGCCCCCCTGGTT GCGGAAAGAGCAGTTTTATCACAGCCCTGGCTGGGGAGCTGCAGCACAGCATCTGCCTGC TGAGTCTCACAGACTCCAGCCTCTCGGATGACCGGCTCAACCACCTGCTGAGCGTGGCCC CGCAGCAGAGCCTGGTGCTCCTGGAGGATGTGGATGCTGCCTTTCTCAGCCGGGACCTGG CTGCGGAGAACCCAGTAAAGTACCAAGGTCTAGGTCGTCTCACCTTCAGTGGACTGCTCA ACGCCTTAGATGGCGTGGCGTCCACTGAGGCACGCATTGTGTTCATGACCACCAACCACG TTGACAGGCTCGACCCTGCCCTGATACGCCCCGGGCGAGTAGACCTGAAGGAGTATGTGG GCCACTGCTCACGCTGGCAGCTGACCCAGATGTTCCAGAGGTTCTATCCCGGGCAGGCAC CTTCCCTGGCCGAGAGCTTTGCAGATCGTGCCCTTCAAGCTACGACTCAGATCAGTCCTG CCCAGGTGCAGGGCTACTTCATGCTGTATAAAAATGACCCCGAGGGGGCAGTGCGTCATG CTGACTCTCTGAGGAGGTGACCACCAGGACGTGCCCCGCTTTCTCCTCCTCTCGGGGATC AATAAACTCCTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 89-1304, - strand, RNAz p=0.995954 | |
| 1314-1451, - strand, RNAz p=0.996707 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 89-1304, - strand, RNAz p=0.995954 | |
| 1314-1451, - strand, RNAz p=0.996707 |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 89-463, gnl|bosTau2|chr2 (59466983-59466609) | |
| 89-463, gnl|Hg17|chr2 (219351164-219351538) | |
| 89-463, gnl|Mm7|chr1 (74829178-74829554) | |
| 599-796, gnl|bosTau2|chr2 (59466163-59465966) | |
| 599-796, gnl|canFam2|chr37 (28264321-28264540) | |
| 599-796, gnl|danRer3|chrUn (99233819-99233616) | |
| 599-796, gnl|dasNov1|scaffold_19156 (4437-4665) | |
| 599-796, gnl|echTel1|scaffold_319525 (11404-11178) | |
| 599-796, gnl|fr1|chrUn (40456345-40456143) | |
| 599-796, gnl|galGal2|chr7 (23220852-23220624) | |
| 599-796, gnl|hg17|chr2 (219351986-219352214) | |
| 599-796, gnl|Hg17|chr2 (219351985-219352182) | |
| 599-796, gnl|mm7|chr1 (74829937-74830165) | |
| 599-796, gnl|Mm7|chr1 (74829936-74830133) | |
| 599-796, gnl|monDom2|scaffold_39 (1987718-1987493) | |
| 599-796, gnl|oryCun1|scaffold_203163 (73919-74147) | |
| 599-796, gnl|panTro1|chr13 (109511622-109511850) | |
| 599-796, gnl|rheMac2|chr12 (82511634-82511862) | |
| 599-796, gnl|rn3|chr9 (74088072-74088300) | |
| 599-796, gnl|tetNig1|chr2 (17059266-17059062) | |
| 599-796, gnl|xenTro1|scaffold_31 (1724026-1724239) | |
| 857-1029, gnl|bosTau2|chr2 (59465458-59465286) | |
| 857-1029, gnl|canFam2|chr37 (28265067-28265252) | |
| 857-1029, gnl|danRer3|chrUn (99230782-99230602) | |
| 857-1029, gnl|dasNov1|scaffold_19156 (5153-5350) | |
| 857-1029, gnl|echTel1|scaffold_319525 (10820-10636) | |
| 857-1029, gnl|fr1|chrUn (40455435-40455255) | |
| 857-1029, gnl|galGal2|chr7 (23219560-23219375) | |
| 857-1029, gnl|hg17|chr2 (219352729-219352914) | |
| 857-1029, gnl|Hg17|chr2 (219352735-219352907) | |
| 857-1029, gnl|loxAfr1|scaffold_30510 (26011-26195) | |
| 857-1029, gnl|mm7|chr1 (74830624-74830809) | |
| 857-1029, gnl|Mm7|chr1 (74830630-74830802) | |
| 857-1029, gnl|monDom2|scaffold_39 (1986943-1986758) | |
| 857-1029, gnl|oryCun1|scaffold_203163 (74567-74752) | |
| 857-1029, gnl|panTro1|chr13 (109512365-109512550) | |
| 857-1029, gnl|rheMac2|chr12 (82512384-82512569) | |
| 857-1029, gnl|rn3|chr9 (74088746-74088931) | |
| 857-1029, gnl|tetNig1|chr2 (17058675-17058495) | |
| 857-1029, gnl|xenTro1|scaffold_31 (1724851-1725036) | |
| 1146-1451, gnl|bosTau2|chr2 (59464798-59464496) | |
| 1146-1451, gnl|canFam2|chr37 (28265706-28265960) | |
| 1146-1451, gnl|danRer3|chrUn (99229135-99228869) | |
| 1146-1451, gnl|dasNov1|scaffold_19156 (5800-6054) | |
| 1146-1451, gnl|echTel1|scaffold_319525 (10052-9801) | |
| 1146-1451, gnl|fr1|chrUn (40454988-40454737) | |
| 1146-1451, gnl|galGal2|chr7 (23218171-23217920) | |
| 1146-1451, gnl|hg17|chr2 (219353347-219353598) | |
| 1146-1451, gnl|Hg17|chr2 (219353360-219353662) | |
| 1146-1451, gnl|mm7|chr1 (74831487-74831731) | |
| 1146-1451, gnl|Mm7|chr1 (74831493-74831787) | |
| 1146-1451, gnl|monDom2|scaffold_39 (1986235-1985981) | |
| 1146-1451, gnl|oryCun1|scaffold_203163 (75145-75396) | |
| 1146-1451, gnl|panTro1|chr13 (109512980-109513231) | |
| 1146-1451, gnl|rheMac2|chr12 (82513016-82513267) | |
| 1146-1451, gnl|rn3|chr9 (74089693-74089935) | |
| 1146-1451, gnl|tetNig1|chr2 (17058201-17057950) | |
| 1146-1451, gnl|xenTro1|scaffold_31 (1726129-1726379) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 89-463, gnl|bosTau2|chr2 (59466983-59466609) | |
| 89-463, gnl|Hg17|chr2 (219351164-219351538) | |
| 89-463, gnl|Mm7|chr1 (74829178-74829554) | |
| 599-796, gnl|bosTau2|chr2 (59466163-59465966) | |
| 599-796, gnl|canFam2|chr37 (28264321-28264540) | |
| 599-796, gnl|danRer3|chrUn (99233819-99233616) | |
| 599-796, gnl|dasNov1|scaffold_19156 (4437-4665) | |
| 599-796, gnl|echTel1|scaffold_319525 (11404-11178) | |
| 599-796, gnl|fr1|chrUn (40456345-40456143) | |
| 599-796, gnl|galGal2|chr7 (23220852-23220624) | |
| 599-796, gnl|hg17|chr2 (219351986-219352214) | |
| 599-796, gnl|Hg17|chr2 (219351985-219352182) | |
| 599-796, gnl|mm7|chr1 (74829937-74830165) | |
| 599-796, gnl|Mm7|chr1 (74829936-74830133) | |
| 599-796, gnl|monDom2|scaffold_39 (1987718-1987493) | |
| 599-796, gnl|oryCun1|scaffold_203163 (73919-74147) | |
| 599-796, gnl|panTro1|chr13 (109511622-109511850) | |
| 599-796, gnl|rheMac2|chr12 (82511634-82511862) | |
| 599-796, gnl|rn3|chr9 (74088072-74088300) | |
| 599-796, gnl|tetNig1|chr2 (17059266-17059062) | |
| 599-796, gnl|xenTro1|scaffold_31 (1724026-1724239) | |
| 857-1029, gnl|bosTau2|chr2 (59465458-59465286) | |
| 857-1029, gnl|canFam2|chr37 (28265067-28265252) | |
| 857-1029, gnl|danRer3|chrUn (99230782-99230602) | |
| 857-1029, gnl|dasNov1|scaffold_19156 (5153-5350) | |
| 857-1029, gnl|echTel1|scaffold_319525 (10820-10636) | |
| 857-1029, gnl|fr1|chrUn (40455435-40455255) | |
| 857-1029, gnl|galGal2|chr7 (23219560-23219375) | |
| 857-1029, gnl|hg17|chr2 (219352729-219352914) | |
| 857-1029, gnl|Hg17|chr2 (219352735-219352907) | |
| 857-1029, gnl|loxAfr1|scaffold_30510 (26011-26195) | |
| 857-1029, gnl|mm7|chr1 (74830624-74830809) | |
| 857-1029, gnl|Mm7|chr1 (74830630-74830802) | |
| 857-1029, gnl|monDom2|scaffold_39 (1986943-1986758) | |
| 857-1029, gnl|oryCun1|scaffold_203163 (74567-74752) | |
| 857-1029, gnl|panTro1|chr13 (109512365-109512550) | |
| 857-1029, gnl|rheMac2|chr12 (82512384-82512569) | |
| 857-1029, gnl|rn3|chr9 (74088746-74088931) | |
| 857-1029, gnl|tetNig1|chr2 (17058675-17058495) | |
| 857-1029, gnl|xenTro1|scaffold_31 (1724851-1725036) | |
| 1146-1451, gnl|bosTau2|chr2 (59464798-59464496) | |
| 1146-1451, gnl|canFam2|chr37 (28265706-28265960) | |
| 1146-1451, gnl|danRer3|chrUn (99229135-99228869) | |
| 1146-1451, gnl|dasNov1|scaffold_19156 (5800-6054) | |
| 1146-1451, gnl|echTel1|scaffold_319525 (10052-9801) | |
| 1146-1451, gnl|fr1|chrUn (40454988-40454737) | |
| 1146-1451, gnl|galGal2|chr7 (23218171-23217920) | |
| 1146-1451, gnl|hg17|chr2 (219353347-219353598) | |
| 1146-1451, gnl|Hg17|chr2 (219353360-219353662) | |
| 1146-1451, gnl|mm7|chr1 (74831487-74831731) | |
| 1146-1451, gnl|Mm7|chr1 (74831493-74831787) | |
| 1146-1451, gnl|monDom2|scaffold_39 (1986235-1985981) | |
| 1146-1451, gnl|oryCun1|scaffold_203163 (75145-75396) | |
| 1146-1451, gnl|panTro1|chr13 (109512980-109513231) | |
| 1146-1451, gnl|rheMac2|chr12 (82513016-82513267) | |
| 1146-1451, gnl|rn3|chr9 (74089693-74089935) | |
| 1146-1451, gnl|tetNig1|chr2 (17058201-17057950) | |
| 1146-1451, gnl|xenTro1|scaffold_31 (1726129-1726379) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| fli (0.202881) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| hyp (0.142837) | |
| ecc (0.115035) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| hyp (0.142837) | |
| ecc (0.115035) |