Non-Coding RNA Search

Ss1.1-Pig4-TMW8051P15.5

Sequence:


               
               GATTAATAACATTGTAAACGGTCTCTTGGAGAAAGAGCCAAAGAAGAAAAAGAAAAAGAA
GAAAAAGCACCAAGAAGATCAGGACCAGGACCCTGTTTTTCAAGGCAGTGACTCCAGTGG
TTACCAAAGTGACCATAAAAAGAAAAAGAAAAAAAGAAAGGAGGCAGAATTTACACCACT
TTCGGAACACGCACCTAAAAAGAAAAGGGAAAAGTAACTTTCTTTAGTGATCTCTTAAGT
AAGATTTGATTTTTAAAAGATTGGTATACACACTATAGATGACTAAATGTTTTGAATTAT
AAGAAATGTTTTATATTCCAGTATTTTGCAAAACAGGAAACATCGGATTAGGAGTTGAGT
TTTTGGTGCTAAAATGACAAGACCGATTACTAATTTGGGAAATAACTGTTATTAAAGTGC
CATTTATTGTATACAGAATAGAATGGTAAGAGCTGCTTTCACTCTCATTCTTCTAAGCAT
ATACATTCTAAAAATGATTTCTACAGTCTAAAAGACTAGTAAAAGGACTTTATAATACAG
TGTTAATATAAAGAATGAGTTCTGAGGTTGAGTTTTTGGTGGTTTTCTTTTTATATAGGT
TTCATGATAGTACATGCCATGTTATTTTGATTTGTTTACATTTCATCATGTCTACTATAA
TAATACTGTTGTTTAACTTGGAATGGTTTGCCAAAGCAATTTCTGAAGTTTCCAGAGCCC
TTAAGGACCTGGCCACTACTGACTGTGTGATAGGAAACAGTATTCACTCTTCTTCCCTTT
GAGGTGCATGGGATGATTTTTTTTTTCTCTTAGTCTTAAGAGGCTTGTTCACTTGTGCCT
CCCCCATTCTGCTTTTGTTTTGTGTTGGAGGAAGGAAAGTCTTAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTAATAACATTGTAAACGGTCTCTTGGAGAAAGAGCCAAAGAAGAAAAAGAAAAAGAA
GAAAAAGCACCAAGAAGATCAGGACCAGGACCCTGTTTTTCAAGGCAGTGACTCCAGTGG
TTACCAAAGTGACCATAAAAAGAAAAAGAAAAAAAGAAAGGAGGCAGAATTTACACCACT
TTCGGAACACGCACCTAAAAAGAAAAGGGAAAAGTAACTTTCTTTAGTGATCTCTTAAGT
AAGATTTGATTTTTAAAAGATTGGTATACACACTATAGATGACTAAATGTTTTGAATTAT
AAGAAATGTTTTATATTCCAGTATTTTGCAAAACAGGAAACATCGGATTAGGAGTTGAGT
TTTTGGTGCTAAAATGACAAGACCGATTACTAATTTGGGAAATAACTGTTATTAAAGTGC
CATTTATTGTATACAGAATAGAATGGTAAGAGCTGCTTTCACTCTCATTCTTCTAAGCAT
ATACATTCTAAAAATGATTTCTACAGTCTAAAAGACTAGTAAAAGGACTTTATAATACAG
TGTTAATATAAAGAATGAGTTCTGAGGTTGAGTTTTTGGTGGTTTTCTTTTTATATAGGT
TTCATGATAGTACATGCCATGTTATTTTGATTTGTTTACATTTCATCATGTCTACTATAA
TAATACTGTTGTTTAACTTGGAATGGTTTGCCAAAGCAATTTCTGAAGTTTCCAGAGCCC
TTAAGGACCTGGCCACTACTGACTGTGTGATAGGAAACAGTATTCACTCTTCTTCCCTTT
GAGGTGCATGGGATGATTTTTTTTTTCTCTTAGTCTTAAGAGGCTTGTTCACTTGTGCCT
CCCCCATTCTGCTTTTGTTTTGTGTTGGAGGAAGGAAAGTCTTAATAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               7-643, gnl|bosTau2|chr4 (10020418-10021034)
               

               
               7-643, gnl|Hg17|chr7 (19511404-19510746)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-643, gnl|bosTau2|chr4 (10020418-10021034)
               

               
               7-643, gnl|Hg17|chr7 (19511404-19510746)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)

	7-643, gnl\|bosTau2\|chr4 (10020418-10021034)
	7-643, gnl\|Hg17\|chr7 (19511404-19510746)

	mgm (0.180343)
	sin (0.174948)
	mga (0.160205)
	ssp (0.13552)
	bla (0.124347)