Non-Coding RNA Search

Ss1.1-Pig4-TMW8051P19.3

Sequence:


               
               TTTTTTTTTTTTTTTTTTGCTGTTGTTGTTCTTGTTTGTTGTTGTTTTATCCCAAGCAGA
TTGCCAGCATAATGGAGAGGAAACCAGATTGCGTATGGACTTTTTCTAATGCCTCTTCCA
GTGTCATGTTTATATATCCAAATGGACATGATCCTCTCAGGTTATTATCTGGCACTAATT
TCTAACTGCTATCTTATTGGAGGTGGCAGCAGTACATCAGTGCCCGGCATGTATCACAGG
CCCGTGTAGGTGTTTGTCTACACGTAAGTGTAAAGGGATCTACATAGCAGGTTTTACACC
TCCGTCTCTAATAGAGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGGCCTATT
CCTGAGTATATGTTTAATTTCTCCATGCATTATATGCCTTCCCCTAAGTAATGACTGAGT
CAGTGGAAAATGGCTAGGTTTTATTCATGTCGTGATGTGTTTTTTTTGTTGTTGTTGTTG
GTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTCAACTCTAAAAGTAATCTACCTCTTAAAA
TTTGTAGTTTAATACTTGTTTGGTGAATTTGTGCCACTTTAACCTTTTCACTATCATTCC
CATTTTGTTACATTTCTGTTATGGGGACTTTATGTTGAAATATTGTATAAAAAACATTTG
TAGCCATTTAAAAATAAAATATTTAAAATTATTTAAATTGTTTTGGACGCTTCAATTGTA
TTATATGTGATTTACATTTTACATTCTTGTTTGAGCTGTTAATCTGGAGAGTGTTCCTGT
ATTGAAGTTTGCTGTTAGTTATTTTATTGTTTCTTGTCGGAGAGTGATATAAAAGACTAT
TCTAATGAAAACATTAAAATTTACAAATTGACATACAAAAGGGGTTGTCCGTTGATTTTA
ACCAATGTAGACTTGAGAGAGAGGAAAAGAGGTTAATTGTAGACAGACAAGTTAAGAGTG
CTGTGTGCTATTTTTTCCCCTTCCAGCATGAAATAAATCACTTGAGCGAGCTTGTCAGAT
GTACAGAAAGTTTTCTTATGCTGTTGCTAGCAAGCACTTAATGACTAGGGGGAATTCAGA
GGATGCATTTTATATCGTTGTAACCAATAAAAAAAAACTTTCTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTGCTGTTGTTGTTCTTGTTTGTTGTTGTTTTATCCCAAGCAGA
TTGCCAGCATAATGGAGAGGAAACCAGATTGCGTATGGACTTTTTCTAATGCCTCTTCCA
GTGTCATGTTTATATATCCAAATGGACATGATCCTCTCAGGTTATTATCTGGCACTAATT
TCTAACTGCTATCTTATTGGAGGTGGCAGCAGTACATCAGTGCCCGGCATGTATCACAGG
CCCGTGTAGGTGTTTGTCTACACGTAAGTGTAAAGGGATCTACATAGCAGGTTTTACACC
TCCGTCTCTAATAGAGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGGCCTATT
CCTGAGTATATGTTTAATTTCTCCATGCATTATATGCCTTCCCCTAAGTAATGACTGAGT
CAGTGGAAAATGGCTAGGTTTTATTCATGTCGTGATGTGTTTTTTTTGTTGTTGTTGTTG
GTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTCAACTCTAAAAGTAATCTACCTCTTAAAA
TTTGTAGTTTAATACTTGTTTGGTGAATTTGTGCCACTTTAACCTTTTCACTATCATTCC
CATTTTGTTACATTTCTGTTATGGGGACTTTATGTTGAAATATTGTATAAAAAACATTTG
TAGCCATTTAAAAATAAAATATTTAAAATTATTTAAATTGTTTTGGACGCTTCAATTGTA
TTATATGTGATTTACATTTTACATTCTTGTTTGAGCTGTTAATCTGGAGAGTGTTCCTGT
ATTGAAGTTTGCTGTTAGTTATTTTATTGTTTCTTGTCGGAGAGTGATATAAAAGACTAT
TCTAATGAAAACATTAAAATTTACAAATTGACATACAAAAGGGGTTGTCCGTTGATTTTA
ACCAATGTAGACTTGAGAGAGAGGAAAAGAGGTTAATTGTAGACAGACAAGTTAAGAGTG
CTGTGTGCTATTTTTTCCCCTTCCAGCATGAAATAAATCACTTGAGCGAGCTTGTCAGAT
GTACAGAAAGTTTTCTTATGCTGTTGCTAGCAAGCACTTAATGACTAGGGGGAATTCAGA
GGATGCATTTTATATCGTTGTAACCAATAAAAAAAAACTTTCTAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               118-355, - strand, RNAz p=0.995847

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-355, - strand, RNAz p=0.995847

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               9-464, gnl|bosTau2|chr16 (40169878-40169442)
               

               
               9-464, gnl|Hg17|chr1 (13858830-13859277)
               

               
               9-464, gnl|Mm7|chr4 (142540888-142540488)
               


               
               480-1127, gnl|bosTau2|chr16 (40169470-40168846)
               

               
               480-1127, gnl|Hg17|chr1 (13859253-13859880)
               

               
               480-1127, gnl|Mm7|chr4 (142540512-142539901)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-464, gnl|bosTau2|chr16 (40169878-40169442)
               

               
               9-464, gnl|Hg17|chr1 (13858830-13859277)
               

               
               9-464, gnl|Mm7|chr4 (142540888-142540488)
               


               
               480-1127, gnl|bosTau2|chr16 (40169470-40168846)
               

               
               480-1127, gnl|Hg17|chr1 (13859253-13859880)
               

               
               480-1127, gnl|Mm7|chr4 (142540512-142539901)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ece (0.229305)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

	9-464, gnl\|bosTau2\|chr16 (40169878-40169442)
	9-464, gnl\|Hg17\|chr1 (13858830-13859277)
	9-464, gnl\|Mm7\|chr4 (142540888-142540488)

	480-1127, gnl\|bosTau2\|chr16 (40169470-40168846)
	480-1127, gnl\|Hg17\|chr1 (13859253-13859880)
	480-1127, gnl\|Mm7\|chr4 (142540512-142539901)