Non-Coding RNA Search

Ss1.1-Pig4-TMW8052A02.5

Sequence:


               
               ATAACCTGCGCCTCTCCCTCCACGACATCCCCCACGCCCACTGGAGGAGCAAGCTGCTGG
CCAAGTACCAGGAGATCCCCTTCTATCACATTTGGAGTGGCAGCCAGAAGGCCCTGCACT
GCACCTTCACCCTGGAGAGGCACAGCCTGGCCTCCACCGAGCTCAGCTGCAAGATCTGTG
TGCGGCAGGTGGAGGGGGAGGGCCAGATATTCCAGCTGCACACCGTGCTGGCAGAGACAC
CTGCTGGCTCCCTGGACGCCCTCTGCTCCGCCCCCAGCAGCACAGTCACCACCCAGCTGG
GACCCTATGCCTTCAAGATCCCGCTGTCCATCCGCCAGAAGATATGCAACAGCCTGGATG
CCCCCAACTCGCGCGGCAACGACTGGCGGCTGCTGGCGCAAAAGCTATCCATGGACCGGT
ACCTGAACTACTTTGCCACCAAAGCGAGCCCCACGGGTGTGATCCTGGACCTCTGGGAGG
CTCTGCAGCAGGACGACGGGGACCTCAACAGCCTGGCAAGTGCCTTGGAGGAGATGGGCA
AGAGCGAGATGCTGGTGGCCATGACCACGGATGGGGACTGCTGAGCCGCCCCAACCCTGT
GCATGCTGGGAGAGACCAGCAGGGGGCGGGCACAGGCCGCCGGGGCAGCCTCTTGTGGGG
CAGTTGGGCCTCCTCACAGCCAGAATGGCCCCCCTCCTCCTCCCCCTGCCCCGCCCCCAG
ACCACGACCAGCCTTAGGAAATCCCTGGACTTTGCTGCTGGGAGGACCCAGCGTTCCTTC
TCCACCCCCTGCTGACTTTCCTGACATCAGACCTCTGTGCAGGAACTGGGACGGGGCTGA
GGCCTCTGGAGGCAGCTAGGGGAGCAGGGAGGTGGCCCTCCCACCCTCAGCCCCCGGGCC
CTCGAGGGGGCCTCTGTTTGAGCTGCGTTCTTCATTTTCCTCCCCGGTTATTAATTTCTC
CCTCCTCCCTAAGCCCCTTTCTCCTTTCATGCCATTTTCCTCTTTGAAGAGTCAAGTACA
ATTCAGGCGAGCTGCTTTCTCCTGTCCACAAACAAAAAGGAAGAGGAAAAAAAAGAAGGA
AAGACAGAAAGCTTCAGACCACTAGTCAGGCTCAAAAGAGAAGAAAAACACCAAAACCAT
AAGGGAAAAGAAAAAACCCAGTTTCTTAGGAAACGCCAATGATTTATTATCCAGATATTT
GGATAAGTCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAACCTGCGCCTCTCCCTCCACGACATCCCCCACGCCCACTGGAGGAGCAAGCTGCTGG
CCAAGTACCAGGAGATCCCCTTCTATCACATTTGGAGTGGCAGCCAGAAGGCCCTGCACT
GCACCTTCACCCTGGAGAGGCACAGCCTGGCCTCCACCGAGCTCAGCTGCAAGATCTGTG
TGCGGCAGGTGGAGGGGGAGGGCCAGATATTCCAGCTGCACACCGTGCTGGCAGAGACAC
CTGCTGGCTCCCTGGACGCCCTCTGCTCCGCCCCCAGCAGCACAGTCACCACCCAGCTGG
GACCCTATGCCTTCAAGATCCCGCTGTCCATCCGCCAGAAGATATGCAACAGCCTGGATG
CCCCCAACTCGCGCGGCAACGACTGGCGGCTGCTGGCGCAAAAGCTATCCATGGACCGGT
ACCTGAACTACTTTGCCACCAAAGCGAGCCCCACGGGTGTGATCCTGGACCTCTGGGAGG
CTCTGCAGCAGGACGACGGGGACCTCAACAGCCTGGCAAGTGCCTTGGAGGAGATGGGCA
AGAGCGAGATGCTGGTGGCCATGACCACGGATGGGGACTGCTGAGCCGCCCCAACCCTGT
GCATGCTGGGAGAGACCAGCAGGGGGCGGGCACAGGCCGCCGGGGCAGCCTCTTGTGGGG
CAGTTGGGCCTCCTCACAGCCAGAATGGCCCCCCTCCTCCTCCCCCTGCCCCGCCCCCAG
ACCACGACCAGCCTTAGGAAATCCCTGGACTTTGCTGCTGGGAGGACCCAGCGTTCCTTC
TCCACCCCCTGCTGACTTTCCTGACATCAGACCTCTGTGCAGGAACTGGGACGGGGCTGA
GGCCTCTGGAGGCAGCTAGGGGAGCAGGGAGGTGGCCCTCCCACCCTCAGCCCCCGGGCC
CTCGAGGGGGCCTCTGTTTGAGCTGCGTTCTTCATTTTCCTCCCCGGTTATTAATTTCTC
CCTCCTCCCTAAGCCCCTTTCTCCTTTCATGCCATTTTCCTCTTTGAAGAGTCAAGTACA
ATTCAGGCGAGCTGCTTTCTCCTGTCCACAAACAAAAAGGAAGAGGAAAAAAAAGAAGGA
AAGACAGAAAGCTTCAGACCACTAGTCAGGCTCAAAAGAGAAGAAAAACACCAAAACCAT
AAGGGAAAAGAAAAAACCCAGTTTCTTAGGAAACGCCAATGATTTATTATCCAGATATTT
GGATAAGTCCTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|10434496|dbj|BAB14276.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|10434496|dbj|BAB14276.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               537-680, - strand, RNAz p=0.983056
               

               
               751-932, - strand, RNAz p=0.974951
               

               
               973-1092, - strand, RNAz p=0.925226

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               537-680, - strand, RNAz p=0.983056
               

               
               751-932, - strand, RNAz p=0.974951
               

               
               973-1092, - strand, RNAz p=0.925226

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               68-236, gnl|bosTau2|chr28 (21751791-21751623)
               

               
               68-236, gnl|Hg17|chr10 (72726334-72726852)
               

               
               68-236, gnl|Mm7|chr10 (60286689-60286519)
               


               
               418-1212, gnl|bosTau2|chr28 (21749864-21749073)
               

               
               418-1212, gnl|Hg17|chr10 (72728874-72729681)
               

               
               418-1212, gnl|Mm7|chr10 (60283569-60282821)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-236, gnl|bosTau2|chr28 (21751791-21751623)
               

               
               68-236, gnl|Hg17|chr10 (72726334-72726852)
               

               
               68-236, gnl|Mm7|chr10 (60286689-60286519)
               


               
               418-1212, gnl|bosTau2|chr28 (21749864-21749073)
               

               
               418-1212, gnl|Hg17|chr10 (72728874-72729681)
               

               
               418-1212, gnl|Mm7|chr10 (60283569-60282821)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               pla (0.267344)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

	537-680, - strand, RNAz p=0.983056
	751-932, - strand, RNAz p=0.974951
	973-1092, - strand, RNAz p=0.925226

	68-236, gnl\|bosTau2\|chr28 (21751791-21751623)
	68-236, gnl\|Hg17\|chr10 (72726334-72726852)
	68-236, gnl\|Mm7\|chr10 (60286689-60286519)

	418-1212, gnl\|bosTau2\|chr28 (21749864-21749073)
	418-1212, gnl\|Hg17\|chr10 (72728874-72729681)
	418-1212, gnl\|Mm7\|chr10 (60283569-60282821)