Non-Coding RNA Search

Ss1.1-Pig4-TMW8052A06.5

Sequence:


               
               AGGCTGGGCAGCTGTGGTTTCCCCACGCTTCATCTGAGAGGCCTGTAGCGTGGGCTCATG
GCCACTCCTGTCCCCTGCCAGGAGAGGTCCCCCTTCCATCACTGGGGCATCCTGGGCCCG
GCTCTCTGTCTAGGAGAGCCGTGGGGATCTTCCCTCCACTTTAGGGCGTGGGTGCGAGGA
CGTCAGGCCAGGTGCTAGGGCGGCTTCCTGCCCTCCTTGCTCAGCAGGGAGCTGGCCACA
GCCAGGGCGCCACCCTGCACGAACCGCACAAAGTTGTCCCCGGCCAGCGGCCCCATGGCA
TACAGGCCCTCCTGGTGGGTGCTCTGGTAGGTGAAGGGGTCCACGTCAATGGGGTTCCTC
TTGGCGCTCAGGGGCTGGTCGGGGTCCATGGCGAGGTCAGCCCCGGCCCCCGGGAGGAAG
GACAGATCGGGGTGGGAGCCAATGAGGACCAGCACCAGGGAAACGCCAAAGACCTTCTGG
AGGCCCTGGGGGTTCCGGAACACAGCCTGGCGGTCCTCCTTGAAGCGCAGCAGCTGGTGC
TCGGGGAGGCTGCAGTAGCCCTCGTAGGGGCTGGGCGACAGGATGGACTGCTCCCGCATC
ATCTGGTGCACCTTGTGGTACTCGGGGTACAGCATCTTGGGCAGCTGGTTGAACACCAGG
CCCGGGTCGTCCACGGGCCGACGGAAGGCGTGGATCACGGGGACGTTGTAGTGGCGGGCG
TAGAGGACCGCGTCGGCCGCAGACAGCCCCGCCCCGATGATGAGGACGGGGTCCGAGGAT
GGGGTCACCTTGCCTGCCCGCGTGGCCGCCTCCAGGGCTGACAGGTGATGGTGGACGAAG
GGCAAGGCCTCTCCGGGGATGCCCAGCCGGGCTGGGCTGTCAGATGTGCCTGTGGCCAGG
ACCACGTTGCGGGCACACAGGGAGAAGGGCTGTTGGCTCTGGTCCTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCTGGGCAGCTGTGGTTTCCCCACGCTTCATCTGAGAGGCCTGTAGCGTGGGCTCATG
GCCACTCCTGTCCCCTGCCAGGAGAGGTCCCCCTTCCATCACTGGGGCATCCTGGGCCCG
GCTCTCTGTCTAGGAGAGCCGTGGGGATCTTCCCTCCACTTTAGGGCGTGGGTGCGAGGA
CGTCAGGCCAGGTGCTAGGGCGGCTTCCTGCCCTCCTTGCTCAGCAGGGAGCTGGCCACA
GCCAGGGCGCCACCCTGCACGAACCGCACAAAGTTGTCCCCGGCCAGCGGCCCCATGGCA
TACAGGCCCTCCTGGTGGGTGCTCTGGTAGGTGAAGGGGTCCACGTCAATGGGGTTCCTC
TTGGCGCTCAGGGGCTGGTCGGGGTCCATGGCGAGGTCAGCCCCGGCCCCCGGGAGGAAG
GACAGATCGGGGTGGGAGCCAATGAGGACCAGCACCAGGGAAACGCCAAAGACCTTCTGG
AGGCCCTGGGGGTTCCGGAACACAGCCTGGCGGTCCTCCTTGAAGCGCAGCAGCTGGTGC
TCGGGGAGGCTGCAGTAGCCCTCGTAGGGGCTGGGCGACAGGATGGACTGCTCCCGCATC
ATCTGGTGCACCTTGTGGTACTCGGGGTACAGCATCTTGGGCAGCTGGTTGAACACCAGG
CCCGGGTCGTCCACGGGCCGACGGAAGGCGTGGATCACGGGGACGTTGTAGTGGCGGGCG
TAGAGGACCGCGTCGGCCGCAGACAGCCCCGCCCCGATGATGAGGACGGGGTCCGAGGAT
GGGGTCACCTTGCCTGCCCGCGTGGCCGCCTCCAGGGCTGACAGGTGATGGTGGACGAAG
GGCAAGGCCTCTCCGGGGATGCCCAGCCGGGCTGGGCTGTCAGATGTGCCTGTGGCCAGG
ACCACGTTGCGGGCACACAGGGAGAAGGGCTGTTGGCTCTGGTCCTCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61403135|gb|AAH91765.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61403135|gb|AAH91765.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               423-948, gnl|bosTau2|chr18 (10920145-10920670)
               

               
               423-948, gnl|Hg17|chr16 (82556884-82556362)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               423-948, gnl|bosTau2|chr18 (10920145-10920670)
               

               
               423-948, gnl|Hg17|chr16 (82556884-82556362)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ute (0.265569)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.265569)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               eru (0.120048)

	423-948, gnl\|bosTau2\|chr18 (10920145-10920670)
	423-948, gnl\|Hg17\|chr16 (82556884-82556362)