Non-Coding RNA Search

Ss1.1-Pig4-TMW8052A12.5

Sequence:


               
               GTATAGAGAAATATGAGGCCCCGATCAGAACAGAAGCATGGAGGGCCCTTGCCGGCTCCC
AAAGTGCAACCCCCGCAGATGGTTGAGGCCAAGCCTCTCGACCCAACAGCAGCCGGCCCT
GCCCACAGGGCTGCCAAGGGCTAAGAGACTCCACGGGAAGGGGACCAACCGCCACGCTGG
AGGACACAGACCACTCAAGGGCCTTGTTGGAGGACGGAGGGAATACAAAGTGCCCACCAA
ACTGAGAAGGCTTCTTGAGGCCGAAAAAAATGAAGCAGGCAGCTCTGTGCAATCAGTGGG
TCAGTTTATTATAGGGTCACTTCCTCACAGGGTGGGATGGGGACAAGGATAGGGCGGACG
ATGCTCTGGGCACCGTGCGCATGGTCCCAGGGGCCATTGGGGCGATTTTACAGTTAAGCT
AGGCTAGGGAGGCGGGTGCTTAGAAGCAGGACATGCATTCCTGAGTTAGGATTTAAGATT
GGGTAACCAGCCCCGTGGGTGCCGGGAATACGTCAGGGAAGGTTTCCATCATTGTTTGGG
GACTAACAGAGCATAGAAGCTCCCCGGTCCTAATGATTATTCAACAATATCTATTAACCA
CAAAGCTTTGATGACAGAGAAGTGTTTTACTGCACACTAGAGTCCTGGGTAGGGGCCACA
GAAGGAGAGGAGAAACCAGGGCCTAAGATGGTATCGGTTATGTCGACAGCAAGATAGGCC
TGAGCTCTGGAGGCGGCAAGCGGAAGGAATAGGGTTCAGGGCTGAGTGGTGTCTCCTCTG
TGGTATAACAAGGATGTGCTCAGAGTCTTGCTTGTTCAGCTCCCAAGACAGAAGGAGACG
GTTCGGCCAGGCCAAGGCCTAGAAAAAGTGTGTCTCTCCTTCTTGTGTTAAATTTGAACC
TCCGTAATCAGCTGTACCCACAAGTGGGTCTTTGAGAGCCACCCAGCCTCTCCTTGTCCC
TGGTCCACAAACCAGTGTTCTCCGTGTGTTTCCCCATGTCGGCACCTCTCCCCCTACCCT
CCATTTGATCCTGCTTCTAACTGCTGACCCATTTTGAGAGCATTATTGCTGTATCTTTTG
GGGCCAGGACTAGAGAGAGGCAAGGGAGGCGTCACTCCTGGGCTTGGGCCTGTGCGGCCC
CTGAGAGTGAGGCTGCCTTGCCTGGCTCTTGTCCCAGCCCTCTGTGTCTCCAGGGAAGAT
GGCCTGTCGGGCAGTGCTGTGGGGGAAGGGGGCGGGGAAATGACCAAAAGTACCGGTGTG
TGTATTAAATATTTTGGTAATGAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATAGAGAAATATGAGGCCCCGATCAGAACAGAAGCATGGAGGGCCCTTGCCGGCTCCC
AAAGTGCAACCCCCGCAGATGGTTGAGGCCAAGCCTCTCGACCCAACAGCAGCCGGCCCT
GCCCACAGGGCTGCCAAGGGCTAAGAGACTCCACGGGAAGGGGACCAACCGCCACGCTGG
AGGACACAGACCACTCAAGGGCCTTGTTGGAGGACGGAGGGAATACAAAGTGCCCACCAA
ACTGAGAAGGCTTCTTGAGGCCGAAAAAAATGAAGCAGGCAGCTCTGTGCAATCAGTGGG
TCAGTTTATTATAGGGTCACTTCCTCACAGGGTGGGATGGGGACAAGGATAGGGCGGACG
ATGCTCTGGGCACCGTGCGCATGGTCCCAGGGGCCATTGGGGCGATTTTACAGTTAAGCT
AGGCTAGGGAGGCGGGTGCTTAGAAGCAGGACATGCATTCCTGAGTTAGGATTTAAGATT
GGGTAACCAGCCCCGTGGGTGCCGGGAATACGTCAGGGAAGGTTTCCATCATTGTTTGGG
GACTAACAGAGCATAGAAGCTCCCCGGTCCTAATGATTATTCAACAATATCTATTAACCA
CAAAGCTTTGATGACAGAGAAGTGTTTTACTGCACACTAGAGTCCTGGGTAGGGGCCACA
GAAGGAGAGGAGAAACCAGGGCCTAAGATGGTATCGGTTATGTCGACAGCAAGATAGGCC
TGAGCTCTGGAGGCGGCAAGCGGAAGGAATAGGGTTCAGGGCTGAGTGGTGTCTCCTCTG
TGGTATAACAAGGATGTGCTCAGAGTCTTGCTTGTTCAGCTCCCAAGACAGAAGGAGACG
GTTCGGCCAGGCCAAGGCCTAGAAAAAGTGTGTCTCTCCTTCTTGTGTTAAATTTGAACC
TCCGTAATCAGCTGTACCCACAAGTGGGTCTTTGAGAGCCACCCAGCCTCTCCTTGTCCC
TGGTCCACAAACCAGTGTTCTCCGTGTGTTTCCCCATGTCGGCACCTCTCCCCCTACCCT
CCATTTGATCCTGCTTCTAACTGCTGACCCATTTTGAGAGCATTATTGCTGTATCTTTTG
GGGCCAGGACTAGAGAGAGGCAAGGGAGGCGTCACTCCTGGGCTTGGGCCTGTGCGGCCC
CTGAGAGTGAGGCTGCCTTGCCTGGCTCTTGTCCCAGCCCTCTGTGTCTCCAGGGAAGAT
GGCCTGTCGGGCAGTGCTGTGGGGGAAGGGGGCGGGGAAATGACCAAAAGTACCGGTGTG
TGTATTAAATATTTTGGTAATGAAAAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

Help | Less info


               
               202-588, gnl|bosTau2|chrX (40627627-40627239)

Aligned organism(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               202-588, gnl|bosTau2|chrX (40627627-40627239)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               cje (0.660939)
               

               
               ute (0.398353)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               jej (0.197844)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.660939)
               

               
               ute (0.398353)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               jej (0.197844)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)

	cje (0.660939)
	ute (0.398353)
	fli (0.202881)
	nbm (0.198649)
	jej (0.197844)
	csp (0.161186)
	cli (0.152812)
	pla (0.133672)
	ecc (0.115035)