Non-Coding RNA Search

Ss1.1-Pig4-TMW8052A19.5

Sequence:


               
               TTATGACATATTCTATATTAATAAGATTTCCCCTCTCTGTCCCTCCCTGCCACCACATAC
ATTTTTTAAGCCCATGACCAAGCCCCAGTCAAGGCTGTTTTTCAATGTGAACAGCTATTT
CCTGTCCCCCAAGGTACCAGCCCTCCTGAGCTGCCAGGGCTAGAGGAGGCAGCCAAGCCG
CACTCCCGGCTGGTGCTCTGGCTGCTGGCTTCTCCCAAGCAGGCCAGGGTGGAGACAGCA
CGCGGCTTCTTAGTCCCTCTGGGCCCACAGAGTGGCACAGGAAGGATCCGAACATACATT
GTGCCACTTGGCAGCCTTGCACTTGGAGTTTTAAGCAGAGGTGACATCTCGTTGACACCT
CAGGTGAAAATCTGGTTTTAAAATGGTTTCTGCCCAGGCTTCTTCCTGCTTAGTAGGCTG
AGAAGACACCCTGGGGTTGGGGGTGCTGGTTACCTCAGCCGGGGGAGGATGGCCGGACCC
GAGCGTGTCCCTGCCCCCGGGCCAGGCCAGCAGGGAAGGCCAAGCTGCAGGAGGACTGCT
GAGGGAGCACCCCGCAGCCCTCTCACTGACTGGGGTGGGCAGGGCCCCTGCAGGGGGAGC
CCCTCTGCCCGTCTGGCTCCCGGCCAGCCAGAAGTACTCAGAAACCAAGACCTTCCCACT
TCCTCCTCCCCACATGGTGCTGAGGCTCCCTGCTGAAATGCAATTAAAGCAATTGATTTT
CTAGTGCTGGTATTTATTGACTACCGTGCAGAAGGGCTATCTTTCTACTCACATCAAACC
TGCGGTTGCGTGTGTGTTGAGTTTTTTGTTTTTAATATTTTAGGACTCTGATTTGTGAGA
ATAGACCTTGTAAATAACCACTGTTCAAGTCGTGGCAGGAGGAGGATAAAGCAAAAGGCC
CCCTCCGCCAGAACCCTGGAGCCAGGGAGGTGGCCACAGCCAGCTCAGCTCTGGACCTGA
CCCAGGGACCCACCACCCAGAGGAGTAAGCTAGCCTGAAGGGAGCCCCGAGGCCACGGAG
AGGGAGGCGGAGCTGACTGGCTCACAGGTAGTGGCACGATGACGCATGAAGGAGATGACG
TTGTGCTCTTTATTGCCAAAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATGACATATTCTATATTAATAAGATTTCCCCTCTCTGTCCCTCCCTGCCACCACATAC
ATTTTTTAAGCCCATGACCAAGCCCCAGTCAAGGCTGTTTTTCAATGTGAACAGCTATTT
CCTGTCCCCCAAGGTACCAGCCCTCCTGAGCTGCCAGGGCTAGAGGAGGCAGCCAAGCCG
CACTCCCGGCTGGTGCTCTGGCTGCTGGCTTCTCCCAAGCAGGCCAGGGTGGAGACAGCA
CGCGGCTTCTTAGTCCCTCTGGGCCCACAGAGTGGCACAGGAAGGATCCGAACATACATT
GTGCCACTTGGCAGCCTTGCACTTGGAGTTTTAAGCAGAGGTGACATCTCGTTGACACCT
CAGGTGAAAATCTGGTTTTAAAATGGTTTCTGCCCAGGCTTCTTCCTGCTTAGTAGGCTG
AGAAGACACCCTGGGGTTGGGGGTGCTGGTTACCTCAGCCGGGGGAGGATGGCCGGACCC
GAGCGTGTCCCTGCCCCCGGGCCAGGCCAGCAGGGAAGGCCAAGCTGCAGGAGGACTGCT
GAGGGAGCACCCCGCAGCCCTCTCACTGACTGGGGTGGGCAGGGCCCCTGCAGGGGGAGC
CCCTCTGCCCGTCTGGCTCCCGGCCAGCCAGAAGTACTCAGAAACCAAGACCTTCCCACT
TCCTCCTCCCCACATGGTGCTGAGGCTCCCTGCTGAAATGCAATTAAAGCAATTGATTTT
CTAGTGCTGGTATTTATTGACTACCGTGCAGAAGGGCTATCTTTCTACTCACATCAAACC
TGCGGTTGCGTGTGTGTTGAGTTTTTTGTTTTTAATATTTTAGGACTCTGATTTGTGAGA
ATAGACCTTGTAAATAACCACTGTTCAAGTCGTGGCAGGAGGAGGATAAAGCAAAAGGCC
CCCTCCGCCAGAACCCTGGAGCCAGGGAGGTGGCCACAGCCAGCTCAGCTCTGGACCTGA
CCCAGGGACCCACCACCCAGAGGAGTAAGCTAGCCTGAAGGGAGCCCCGAGGCCACGGAG
AGGGAGGCGGAGCTGACTGGCTCACAGGTAGTGGCACGATGACGCATGAAGGAGATGACG
TTGTGCTCTTTATTGCCAAAAATA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               407-674, - strand, RNAz p=0.99987
               

               
               755-937, + strand, RNAz p=0.958361

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               407-674, - strand, RNAz p=0.99987
               

               
               755-937, + strand, RNAz p=0.958361

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               407-674, DB820370 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|DB820370.1|), blast E-value=0, identity=99.63%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               407-674, DB820370 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|DB820370.1|), blast E-value=0, identity=99.63%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_018110, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_018110, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1104, gnl|bosTau2|chr18 (21469779-21470874)
               

               
               1-1104, gnl|Hg17|chr16 (56064544-56063390)
               

               
               1-1104, gnl|Mm7|chr8 (93453936-93452923)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1104, gnl|bosTau2|chr18 (21469779-21470874)
               

               
               1-1104, gnl|Hg17|chr16 (56064544-56063390)
               

               
               1-1104, gnl|Mm7|chr8 (93453936-93452923)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hyp (0.285673)
               

               
               ece (0.229305)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               ece (0.229305)
               

               
               pla (0.133672)

	407-674, - strand, RNAz p=0.99987
	755-937, + strand, RNAz p=0.958361

	1-1104, gnl\|bosTau2\|chr18 (21469779-21470874)
	1-1104, gnl\|Hg17\|chr16 (56064544-56063390)
	1-1104, gnl\|Mm7\|chr8 (93453936-93452923)