Ss1.1-Pig4-TMW8052A21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCATGATTACAGGCAAGGAATTGTTCCTCCGGGTCTCACAGAAAATGAATTATGGAGAG CGAAGTACATCTATGATTCAGCTTTTCATCCTGACACTGGCGAAAAGATGATCTTGATAG GAAGAATGTCAGCTCAGGTTCCAATGAACATGACCATCACAGGTTGTATGATGACTTTTT ACAGGACCACGCCGGCAGTGCTGTTCTGGCAGTGGATCAACCAGTCCTTCAATGCGGTGG TCAATTACACCAACAGAAGTGGAGACGCCCCCCTCACTGTAAACGAACTGGGAACAGCCT ATGTTTCTGCAACAACAGGTGCTGTAGCAACAGCTCTAGGACTCAATGCCCTAACCAAGC ATGTCTCTCCACTCATAGGACGTTTTGTTCCCTTCGCCGCAGTGGCTGCTGCTAATTGCA TTAATATTCCATTAATGAGGCAAAGGGAACTCAGAGCTGGCATCCCCGTCACGGATGAGA ATGGGAACCGTCTGGGCGAGTCGGCAAACGCTGCCAAACAAGCCATCACTCAAGTGGTCA TCTCCAGGATTCTCATGGCAGCCCCTGGCATGGCCATCCCTCCATTTATCATGAACACGT TGGAAAAGAAAGCCTTTCTCAAGAGGTTCCCGTGGATGAGCGCACCTATTCAAGTTGGAT TAGTTGGTTTCTGTTTGGTATTTGCTACACCTTTGTGCTGTGCTCTGTTTCCTCAGAAAA GTTCCATGTCTGTGACAAGCTTGGAGGCCGAGCTGCAAGCCAAGATCCGAGAGACCTCTC CTGAACTACGGCGCGTGTATTTTAACAAGGGATTATAAAGCCCGGGGGGGTTGGAGGGGA CCATCTTTGGCTGATCCTGCCCCCTGCAAGCTGGGTGTAGCCCAGATGGGTGAGGAACAT CCTGTTTGCCCTGGGTTCTCCCGGTGACAGAGCCCTTTTCAAGATCCACATTAGCCTCTT AGAGTCACCCTACTGCTTACAGCACAGCACCTGGGGTGGGGCAGGTGTCCCCCACCTGTT GGCCCCCTTACATTTGAATCATGGGATAATTTACAGAAATACCCTTCCTATAGCTTTTAT AGTCATTGTTTTTTCAAAGACGGTATCCCTCACCCAGAGTTTTCAAAAGCACTGGTAGGT GTAGAATAAATGTCCAGTCTATGCCCCACAAATATTGATTATCAGTGAAAAGGAAATCTG GGTAAAATACTGAATTTTTATCCCCCTCTTATTTCAAATCATGGAGATCTCAGTAATGAG TTGGGAAAACACAAAAGCTCTGAGATGTCACTGTGAAGTGACTCACAAATAAGAAGGGCA GTTTGCTTCCAGGTTGGGCAGGGGGCAACCCCTCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCATGATTACAGGCAAGGAATTGTTCCTCCGGGTCTCACAGAAAATGAATTATGGAGAG CGAAGTACATCTATGATTCAGCTTTTCATCCTGACACTGGCGAAAAGATGATCTTGATAG GAAGAATGTCAGCTCAGGTTCCAATGAACATGACCATCACAGGTTGTATGATGACTTTTT ACAGGACCACGCCGGCAGTGCTGTTCTGGCAGTGGATCAACCAGTCCTTCAATGCGGTGG TCAATTACACCAACAGAAGTGGAGACGCCCCCCTCACTGTAAACGAACTGGGAACAGCCT ATGTTTCTGCAACAACAGGTGCTGTAGCAACAGCTCTAGGACTCAATGCCCTAACCAAGC ATGTCTCTCCACTCATAGGACGTTTTGTTCCCTTCGCCGCAGTGGCTGCTGCTAATTGCA TTAATATTCCATTAATGAGGCAAAGGGAACTCAGAGCTGGCATCCCCGTCACGGATGAGA ATGGGAACCGTCTGGGCGAGTCGGCAAACGCTGCCAAACAAGCCATCACTCAAGTGGTCA TCTCCAGGATTCTCATGGCAGCCCCTGGCATGGCCATCCCTCCATTTATCATGAACACGT TGGAAAAGAAAGCCTTTCTCAAGAGGTTCCCGTGGATGAGCGCACCTATTCAAGTTGGAT TAGTTGGTTTCTGTTTGGTATTTGCTACACCTTTGTGCTGTGCTCTGTTTCCTCAGAAAA GTTCCATGTCTGTGACAAGCTTGGAGGCCGAGCTGCAAGCCAAGATCCGAGAGACCTCTC CTGAACTACGGCGCGTGTATTTTAACAAGGGATTATAAAGCCCGGGGGGGTTGGAGGGGA CCATCTTTGGCTGATCCTGCCCCCTGCAAGCTGGGTGTAGCCCAGATGGGTGAGGAACAT CCTGTTTGCCCTGGGTTCTCCCGGTGACAGAGCCCTTTTCAAGATCCACATTAGCCTCTT AGAGTCACCCTACTGCTTACAGCACAGCACCTGGGGTGGGGCAGGTGTCCCCCACCTGTT GGCCCCCTTACATTTGAATCATGGGATAATTTACAGAAATACCCTTCCTATAGCTTTTAT AGTCATTGTTTTTTCAAAGACGGTATCCCTCACCCAGAGTTTTCAAAAGCACTGGTAGGT GTAGAATAAATGTCCAGTCTATGCCCCACAAATATTGATTATCAGTGAAAAGGAAATCTG GGTAAAATACTGAATTTTTATCCCCCTCTTATTTCAAATCATGGAGATCTCAGTAATGAG TTGGGAAAACACAAAAGCTCTGAGATGTCACTGTGAAGTGACTCACAAATAAGAAGGGCA GTTTGCTTCCAGGTTGGGCAGGGGGCAACCCCTCCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 12-200, gnl|bosTau2|chr10 (765126-764938) | |
| 12-200, gnl|Hg17|chr5 (174868639-174868827) | |
| 12-200, gnl|Mm7|chr13 (53130417-53130605) | |
| 444-573, gnl|bosTau2|chr10 (760721-760592) | |
| 444-573, gnl|canFam2|chr4 (40695064-40694910) | |
| 444-573, gnl|danRer3|chrNA (225234843-225234701) | |
| 444-573, gnl|dasNov1|scaffold_37778 (39267-39424) | |
| 444-573, gnl|echTel1|scaffold_323410 (39588-39744) | |
| 444-573, gnl|fr1|chrUn (29105678-29105528) | |
| 444-573, gnl|galGal2|chr13 (9192623-9192470) | |
| 444-573, gnl|hg17|chr5 (174873047-174873205) | |
| 444-573, gnl|Hg17|chr5 (174873070-174873199) | |
| 444-573, gnl|loxAfr1|scaffold_21334 (1782-1941) | |
| 444-573, gnl|mm7|chr13 (53135353-53135517) | |
| 444-573, gnl|Mm7|chr13 (53135382-53135511) | |
| 444-573, gnl|monDom2|scaffold_6 (23607148-23606989) | |
| 444-573, gnl|oryCun1|scaffold_208859 (101590-101748) | |
| 444-573, gnl|panTro1|chr4 (182336130-182336288) | |
| 444-573, gnl|rheMac2|chr6 (171948556-171948714) | |
| 444-573, gnl|rn3|chr17 (16615125-16614967) | |
| 444-573, gnl|tetNig1|chr1 (1145960-1146102) | |
| 444-573, gnl|xenTro1|scaffold_1747 (88819-88662) | |
| 720-1284, gnl|bosTau2|chr10 (746121-745579) | |
| 720-1284, gnl|Hg17|chr5 (174886245-174886800) | |
| 720-1284, gnl|Mm7|chr13 (53148035-53148529) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 12-200, gnl|bosTau2|chr10 (765126-764938) | |
| 12-200, gnl|Hg17|chr5 (174868639-174868827) | |
| 12-200, gnl|Mm7|chr13 (53130417-53130605) | |
| 444-573, gnl|bosTau2|chr10 (760721-760592) | |
| 444-573, gnl|canFam2|chr4 (40695064-40694910) | |
| 444-573, gnl|danRer3|chrNA (225234843-225234701) | |
| 444-573, gnl|dasNov1|scaffold_37778 (39267-39424) | |
| 444-573, gnl|echTel1|scaffold_323410 (39588-39744) | |
| 444-573, gnl|fr1|chrUn (29105678-29105528) | |
| 444-573, gnl|galGal2|chr13 (9192623-9192470) | |
| 444-573, gnl|hg17|chr5 (174873047-174873205) | |
| 444-573, gnl|Hg17|chr5 (174873070-174873199) | |
| 444-573, gnl|loxAfr1|scaffold_21334 (1782-1941) | |
| 444-573, gnl|mm7|chr13 (53135353-53135517) | |
| 444-573, gnl|Mm7|chr13 (53135382-53135511) | |
| 444-573, gnl|monDom2|scaffold_6 (23607148-23606989) | |
| 444-573, gnl|oryCun1|scaffold_208859 (101590-101748) | |
| 444-573, gnl|panTro1|chr4 (182336130-182336288) | |
| 444-573, gnl|rheMac2|chr6 (171948556-171948714) | |
| 444-573, gnl|rn3|chr17 (16615125-16614967) | |
| 444-573, gnl|tetNig1|chr1 (1145960-1146102) | |
| 444-573, gnl|xenTro1|scaffold_1747 (88819-88662) | |
| 720-1284, gnl|bosTau2|chr10 (746121-745579) | |
| 720-1284, gnl|Hg17|chr5 (174886245-174886800) | |
| 720-1284, gnl|Mm7|chr13 (53148035-53148529) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.31224) | |
| col (0.195008) | |
| cli (0.152812) |