Ss1.1-Pig4-TMW8052B01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTTTGTCAAGCTGTTCATGAATTTGGTTTAACTGGTGCATCCGACACATATTCTCTCTG TGAAGTTTCTGTTACCCCTGAGGGTGTCATAAAGCAGAGACGACTTCCAGACCAGTTCTC CAAATTAGCTGATAGAATTCAGCTCAATGGAAGGTATTATTTAAAAAATAACATGGAAAC AGAAACCCTATGTTCAGATGAAGATGCTCAAGAACTAGTTAAGGAAAGCCAGCTATCCAT GCTGCAACTCAGTACTATTGAGGTGGCCACTCAGCTGTCAATGAGGGATTTTGATTTATT TCGTAATATCGAGCCTACTGAATATATTGATGACCTTTTTAAGTTAGATTCCAAAACAGG AAATACTCACTTGAAAGAATTTGAGGATATTGTAAACCAAGAGACATTCTGGGTTGCCTC GGAGATTTTAACTGAATCAAATCAGCTCAAACGAATGAAGATCATTAAACATTTTATTAA AATTGCACTTCATTGTCGAGAATGTAAGAACTTCAACTCCATGTTTGCAATAATAAGTGG CTTGAATCTGGCATCTGTTGCACGACTCAGAGGTACTTGGGAAAAGTTACCAAGCAAGTA TGAGAAACATCTCCAAGATCTCCAAGACCTTTTTGATCCATCTAGAAACATGGCAAAATA CAGAAATATTCTTAGTAGTCAAAGTATGCAGCCTCCAATTATTCCTCTCTTCCCTGTTGT CAAGAAAGATATGACATTTCTACATGAAGGAAATGATTCCAAAGTAGATGGTTTAGTAAA TTTTGAGAAGCTCAGAATGATTGCCAAGGAAATTCGTCAAGTTGTTCGAATGACTTCTGC TAACATGGACCCAGCTATGATGTTCCGTCAGAGGAAGAAGAGGTGGCGGAGTCTGGGGTC GCTGAGTCAGGGCAGCACAAATTCAAACATGCTAGATGTTCAGGGAGGTGCTCACAAAAA ACGGGCGCGTCGAAGCTCTCTGCTTAATGCCAAGAAGCTATACGAGGATGCCCAAATGGC GAGGAAAGTGAAGCAGTATCTTTCCAGCCTGGATGTAGAGACAGATGAGGAGAAGTTCCA GATGATGTCATTGCAGTGGGAGCCTGCATATGGTACTTTGACCAAGAATTTAAATGAGAA AAGATATGTCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTTTGTCAAGCTGTTCATGAATTTGGTTTAACTGGTGCATCCGACACATATTCTCTCTG TGAAGTTTCTGTTACCCCTGAGGGTGTCATAAAGCAGAGACGACTTCCAGACCAGTTCTC CAAATTAGCTGATAGAATTCAGCTCAATGGAAGGTATTATTTAAAAAATAACATGGAAAC AGAAACCCTATGTTCAGATGAAGATGCTCAAGAACTAGTTAAGGAAAGCCAGCTATCCAT GCTGCAACTCAGTACTATTGAGGTGGCCACTCAGCTGTCAATGAGGGATTTTGATTTATT TCGTAATATCGAGCCTACTGAATATATTGATGACCTTTTTAAGTTAGATTCCAAAACAGG AAATACTCACTTGAAAGAATTTGAGGATATTGTAAACCAAGAGACATTCTGGGTTGCCTC GGAGATTTTAACTGAATCAAATCAGCTCAAACGAATGAAGATCATTAAACATTTTATTAA AATTGCACTTCATTGTCGAGAATGTAAGAACTTCAACTCCATGTTTGCAATAATAAGTGG CTTGAATCTGGCATCTGTTGCACGACTCAGAGGTACTTGGGAAAAGTTACCAAGCAAGTA TGAGAAACATCTCCAAGATCTCCAAGACCTTTTTGATCCATCTAGAAACATGGCAAAATA CAGAAATATTCTTAGTAGTCAAAGTATGCAGCCTCCAATTATTCCTCTCTTCCCTGTTGT CAAGAAAGATATGACATTTCTACATGAAGGAAATGATTCCAAAGTAGATGGTTTAGTAAA TTTTGAGAAGCTCAGAATGATTGCCAAGGAAATTCGTCAAGTTGTTCGAATGACTTCTGC TAACATGGACCCAGCTATGATGTTCCGTCAGAGGAAGAAGAGGTGGCGGAGTCTGGGGTC GCTGAGTCAGGGCAGCACAAATTCAAACATGCTAGATGTTCAGGGAGGTGCTCACAAAAA ACGGGCGCGTCGAAGCTCTCTGCTTAATGCCAAGAAGCTATACGAGGATGCCCAAATGGC GAGGAAAGTGAAGCAGTATCTTTCCAGCCTGGATGTAGAGACAGATGAGGAGAAGTTCCA GATGATGTCATTGCAGTGGGAGCCTGCATATGGTACTTTGACCAAGAATTTAAATGAGAA AAGATATGTCAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 152-537, gnl|bosTau2|chr17 (21297504-21297889) | |
| 152-537, gnl|canFam2|chr15 (59356792-59357205) | |
| 152-537, gnl|danRer3|chrUn (157976919-157977321) | |
| 152-537, gnl|dasNov1|scaffold_3885 (74070-73653) | |
| 152-537, gnl|echTel1|scaffold_321536 (45820-45401) | |
| 152-537, gnl|fr1|chrUn (171002858-171002354) | |
| 152-537, gnl|galGal2|chr4 (22790497-22790915) | |
| 152-537, gnl|hg17|chr4 (160620309-160620726) | |
| 152-537, gnl|Hg17|chr4 (160620319-160620704) | |
| 152-537, gnl|loxAfr1|scaffold_7604 (82494-82076) | |
| 152-537, gnl|mm7|chr3 (79191176-79190773) | |
| 152-537, gnl|Mm7|chr3 (79191164-79190779) | |
| 152-537, gnl|monDom2|scaffold_9 (31741831-31742240) | |
| 152-537, gnl|oryCun1|scaffold_213384 (43301-42888) | |
| 152-537, gnl|panTro1|chr3 (178065635-178066052) | |
| 152-537, gnl|rheMac2|chr5 (151511016-151511432) | |
| 152-537, gnl|rn3|chr2 (170448026-170447614) | |
| 152-537, gnl|tetNig1|chr20 (1603117-1603521) | |
| 152-537, gnl|xenTro1|scaffold_231 (633033-632615) | |
| 725-874, gnl|bosTau2|chr7 (18698604-18698456) | |
| 725-874, gnl|canFam2|chr11 (22807840-22807983) | |
| 725-874, gnl|danRer3|chrNA (177129715-177129585) | |
| 725-874, gnl|echTel1|scaffold_321536 (44072-44205) | |
| 725-874, gnl|fr1|chrUn (171000855-171000993) | |
| 725-874, gnl|galGal2|chr13 (15475825-15475968) | |
| 725-874, gnl|hg17|chr5 (130816642-130816785) | |
| 725-874, gnl|Hg17|chr5 (130816793-130816645) | |
| 725-874, gnl|loxAfr1|scaffold_1256 (89886-90029) | |
| 725-874, gnl|mm7|chr11 (54625500-54625359) | |
| 725-874, gnl|Mm7|chr11 (54625349-54625495) | |
| 725-874, gnl|monDom2|scaffold_6 (95248452-95248309) | |
| 725-874, gnl|oryCun1|scaffold_173063 (51013-51151) | |
| 725-874, gnl|panTro1|chr4 (137154606-137154749) | |
| 725-874, gnl|rheMac2|chr6 (127870674-127870817) | |
| 725-874, gnl|rn3|chr10 (40087319-40087180) | |
| 725-874, gnl|tetNig1|chr7 (8268243-8268381) | |
| 725-874, gnl|xenTro1|scaffold_10 (73878-73735) | |
| 748-865, gnl|bosTau2|chr17 (21300211-21300328) | |
| 748-865, gnl|canFam2|chr15 (59358674-59358807) | |
| 748-865, gnl|danRer3|chrUn (157983042-157983175) | |
| 748-865, gnl|echTel1|scaffold_321536 (44204-44071) | |
| 748-865, gnl|fr1|chrUn (171000984-171000863) | |
| 748-865, gnl|galGal2|chr4 (22791938-22792071) | |
| 748-865, gnl|hg17|chr4 (160622035-160622168) | |
| 748-865, gnl|Hg17|chr4 (160622036-160622153) | |
| 748-865, gnl|loxAfr1|scaffold_7604 (80733-80600) | |
| 748-865, gnl|mm7|chr3 (79188361-79188228) | |
| 748-865, gnl|Mm7|chr3 (79188358-79188241) | |
| 748-865, gnl|monDom2|scaffold_9 (31744510-31744643) | |
| 748-865, gnl|oryCun1|scaffold_213384 (41560-41427) | |
| 748-865, gnl|panTro1|chr3 (178067296-178067429) | |
| 748-865, gnl|rheMac2|chr5 (151512658-151512791) | |
| 748-865, gnl|rn3|chr2 (170444047-170443914) | |
| 748-865, gnl|tetNig1|chr20 (1604248-1604380) | |
| 748-865, gnl|xenTro1|scaffold_231 (631341-631209) | |
| 897-1107, gnl|bosTau2|chr17 (21302061-21302274) | |
| 897-1107, gnl|Hg17|chr4 (160623862-160624075) | |
| 897-1107, gnl|Mm7|chr3 (79186320-79186107) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 152-537, gnl|bosTau2|chr17 (21297504-21297889) | |
| 152-537, gnl|canFam2|chr15 (59356792-59357205) | |
| 152-537, gnl|danRer3|chrUn (157976919-157977321) | |
| 152-537, gnl|dasNov1|scaffold_3885 (74070-73653) | |
| 152-537, gnl|echTel1|scaffold_321536 (45820-45401) | |
| 152-537, gnl|fr1|chrUn (171002858-171002354) | |
| 152-537, gnl|galGal2|chr4 (22790497-22790915) | |
| 152-537, gnl|hg17|chr4 (160620309-160620726) | |
| 152-537, gnl|Hg17|chr4 (160620319-160620704) | |
| 152-537, gnl|loxAfr1|scaffold_7604 (82494-82076) | |
| 152-537, gnl|mm7|chr3 (79191176-79190773) | |
| 152-537, gnl|Mm7|chr3 (79191164-79190779) | |
| 152-537, gnl|monDom2|scaffold_9 (31741831-31742240) | |
| 152-537, gnl|oryCun1|scaffold_213384 (43301-42888) | |
| 152-537, gnl|panTro1|chr3 (178065635-178066052) | |
| 152-537, gnl|rheMac2|chr5 (151511016-151511432) | |
| 152-537, gnl|rn3|chr2 (170448026-170447614) | |
| 152-537, gnl|tetNig1|chr20 (1603117-1603521) | |
| 152-537, gnl|xenTro1|scaffold_231 (633033-632615) | |
| 725-874, gnl|bosTau2|chr7 (18698604-18698456) | |
| 725-874, gnl|canFam2|chr11 (22807840-22807983) | |
| 725-874, gnl|danRer3|chrNA (177129715-177129585) | |
| 725-874, gnl|echTel1|scaffold_321536 (44072-44205) | |
| 725-874, gnl|fr1|chrUn (171000855-171000993) | |
| 725-874, gnl|galGal2|chr13 (15475825-15475968) | |
| 725-874, gnl|hg17|chr5 (130816642-130816785) | |
| 725-874, gnl|Hg17|chr5 (130816793-130816645) | |
| 725-874, gnl|loxAfr1|scaffold_1256 (89886-90029) | |
| 725-874, gnl|mm7|chr11 (54625500-54625359) | |
| 725-874, gnl|Mm7|chr11 (54625349-54625495) | |
| 725-874, gnl|monDom2|scaffold_6 (95248452-95248309) | |
| 725-874, gnl|oryCun1|scaffold_173063 (51013-51151) | |
| 725-874, gnl|panTro1|chr4 (137154606-137154749) | |
| 725-874, gnl|rheMac2|chr6 (127870674-127870817) | |
| 725-874, gnl|rn3|chr10 (40087319-40087180) | |
| 725-874, gnl|tetNig1|chr7 (8268243-8268381) | |
| 725-874, gnl|xenTro1|scaffold_10 (73878-73735) | |
| 748-865, gnl|bosTau2|chr17 (21300211-21300328) | |
| 748-865, gnl|canFam2|chr15 (59358674-59358807) | |
| 748-865, gnl|danRer3|chrUn (157983042-157983175) | |
| 748-865, gnl|echTel1|scaffold_321536 (44204-44071) | |
| 748-865, gnl|fr1|chrUn (171000984-171000863) | |
| 748-865, gnl|galGal2|chr4 (22791938-22792071) | |
| 748-865, gnl|hg17|chr4 (160622035-160622168) | |
| 748-865, gnl|Hg17|chr4 (160622036-160622153) | |
| 748-865, gnl|loxAfr1|scaffold_7604 (80733-80600) | |
| 748-865, gnl|mm7|chr3 (79188361-79188228) | |
| 748-865, gnl|Mm7|chr3 (79188358-79188241) | |
| 748-865, gnl|monDom2|scaffold_9 (31744510-31744643) | |
| 748-865, gnl|oryCun1|scaffold_213384 (41560-41427) | |
| 748-865, gnl|panTro1|chr3 (178067296-178067429) | |
| 748-865, gnl|rheMac2|chr5 (151512658-151512791) | |
| 748-865, gnl|rn3|chr2 (170444047-170443914) | |
| 748-865, gnl|tetNig1|chr20 (1604248-1604380) | |
| 748-865, gnl|xenTro1|scaffold_231 (631341-631209) | |
| 897-1107, gnl|bosTau2|chr17 (21302061-21302274) | |
| 897-1107, gnl|Hg17|chr4 (160623862-160624075) | |
| 897-1107, gnl|Mm7|chr3 (79186320-79186107) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.195274) |