Non-Coding RNA Search

Ss1.1-Pig4-TMW8052B03.5.5

Sequence:


               
               TAAGTCAAAAGCTGCTCTGGTAATAGCAATAATTCTGTCCCCATGACTCCAACTTCCACC
TCTTCTAACTCAGACGATTGCAGCAAAAATACTTCCCCTACAACACAAACGCCAGCTTCT
GGGGCAGGCGCCTCGGTGATGTCTGGCACGGGGGAGAGCGCTAATCCCGAGAACAGCGAG
CTCAAATACTCAGGTCAAGACGGGCTGTACATAGGTGTCAGCCTGGCCTCGCCGGCTGAA
GTCACCTCCTCGGTGAGACAGGATTCCTGGTGCGCCCTGGCCCTGGCCTGAGCCGGCCTC
GGGGAGCGGGAGGCCACCGAGGCCCCCATGACCTTCACCGATCTCCTTGTCATGCAGTCC
AGACTGGGCCGAGGATGCTGATGGGACATTTTCCTCTGACACATGATTTCTGTGCCTTTA
TTTGAAAGAGAAGAATCTCCCAAGAGGCTCGCTCTGTCTTACCACCCAGGCCCCGTCTTG
GAGACCCAGAGAGAAGATGGAACTCATCCCCGGGGAGGGCCGCCGTGGCGTCCACAGTAT
GCCGCCACCTCCCCGGCCACAGCCACGGCCACTTGCAGGCAGCCTGCCTCTGGGTGGACC
AGAGATGTCCAGCGTGCCACTTCCAGAAACCGGGACTAAGACCGGGGCCATGCCCGCTAA
GGAATATTGAGAGAGATTTTTAAAACAAGGGTTTTATGCGTATTGCCCCAAATCATGTGC
TTCTTCTGATCAGCTTTGGTTATTCCCGAATTTCTCCGTACCTTTTCCATGCCCCAGATT
CCACGTGCGTTTATGGAGAAGACCATTCGTTTGGTACACACCTCTGGAGGCTGAGTCGGT
TCAAGAGCGCTCTTGTCAAAAGTATCACCCAGTTTGCAGGACTGCACCGTAACTGTAACA
TACACTGTGACTGACGTTTTTTCCAAGTTCACATTGTGTGACTGACCCGAAGTCAGTCTG
AATTTGTAAACAGGGTAGCAAACAAGATATTTTTCTTCCATGTATACAATAATTTTTTTA
AAAAGTGCAATTTGCGTTGCAGCAATCAGTGTTAAATCATTTGCATAAGATTTAACAACA
TTTTTTATAATGAATGTAGACATTTTAACTTAATGGTACTTAAATAATTTAAAAGAAAAA
AATGTAAACTTAGACATTCTTATGCTTCTTTTACAACTACATCCCATTTTTATATTTCCA
ATGGTGAAAAGAAAAATATTTCAAGAACAAATCTTCTCTCAGGTAAATTGCCTTTATCCA
TTTGTTAAGAATTTTGTACAAGAACACCAGGATCTCCCCTTTATTTTACTGTGGAACATG
TGCTGGAAAAATGGCAACAAAACTTTACTACCTAACAGATAACATTTGTAAATACTCTAG
GCATCTGTACACACTATGATGACGTCTTTATAGTGTGACTAACCCACAAGCAGGTTGGTT
TACGTTAATTTTTTTTTTTAATGGGATGTCATATGGAAACCTGTTTCACCAGAGTTTTAA
AAATAAAAAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGTCAAAAGCTGCTCTGGTAATAGCAATAATTCTGTCCCCATGACTCCAACTTCCACC
TCTTCTAACTCAGACGATTGCAGCAAAAATACTTCCCCTACAACACAAACGCCAGCTTCT
GGGGCAGGCGCCTCGGTGATGTCTGGCACGGGGGAGAGCGCTAATCCCGAGAACAGCGAG
CTCAAATACTCAGGTCAAGACGGGCTGTACATAGGTGTCAGCCTGGCCTCGCCGGCTGAA
GTCACCTCCTCGGTGAGACAGGATTCCTGGTGCGCCCTGGCCCTGGCCTGAGCCGGCCTC
GGGGAGCGGGAGGCCACCGAGGCCCCCATGACCTTCACCGATCTCCTTGTCATGCAGTCC
AGACTGGGCCGAGGATGCTGATGGGACATTTTCCTCTGACACATGATTTCTGTGCCTTTA
TTTGAAAGAGAAGAATCTCCCAAGAGGCTCGCTCTGTCTTACCACCCAGGCCCCGTCTTG
GAGACCCAGAGAGAAGATGGAACTCATCCCCGGGGAGGGCCGCCGTGGCGTCCACAGTAT
GCCGCCACCTCCCCGGCCACAGCCACGGCCACTTGCAGGCAGCCTGCCTCTGGGTGGACC
AGAGATGTCCAGCGTGCCACTTCCAGAAACCGGGACTAAGACCGGGGCCATGCCCGCTAA
GGAATATTGAGAGAGATTTTTAAAACAAGGGTTTTATGCGTATTGCCCCAAATCATGTGC
TTCTTCTGATCAGCTTTGGTTATTCCCGAATTTCTCCGTACCTTTTCCATGCCCCAGATT
CCACGTGCGTTTATGGAGAAGACCATTCGTTTGGTACACACCTCTGGAGGCTGAGTCGGT
TCAAGAGCGCTCTTGTCAAAAGTATCACCCAGTTTGCAGGACTGCACCGTAACTGTAACA
TACACTGTGACTGACGTTTTTTCCAAGTTCACATTGTGTGACTGACCCGAAGTCAGTCTG
AATTTGTAAACAGGGTAGCAAACAAGATATTTTTCTTCCATGTATACAATAATTTTTTTA
AAAAGTGCAATTTGCGTTGCAGCAATCAGTGTTAAATCATTTGCATAAGATTTAACAACA
TTTTTTATAATGAATGTAGACATTTTAACTTAATGGTACTTAAATAATTTAAAAGAAAAA
AATGTAAACTTAGACATTCTTATGCTTCTTTTACAACTACATCCCATTTTTATATTTCCA
ATGGTGAAAAGAAAAATATTTCAAGAACAAATCTTCTCTCAGGTAAATTGCCTTTATCCA
TTTGTTAAGAATTTTGTACAAGAACACCAGGATCTCCCCTTTATTTTACTGTGGAACATG
TGCTGGAAAAATGGCAACAAAACTTTACTACCTAACAGATAACATTTGTAAATACTCTAG
GCATCTGTACACACTATGATGACGTCTTTATAGTGTGACTAACCCACAAGCAGGTTGGTT
TACGTTAATTTTTTTTTTTAATGGGATGTCATATGGAAACCTGTTTCACCAGAGTTTTAA
AAATAAAAAGGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q95273_PIG

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q95273_PIG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1395-1512, - strand, RNAz p=0.545856

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1395-1512, - strand, RNAz p=0.545856

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               123-1512, gnl|bosTau2|chr3 (80042936-80044324)
               

               
               123-1512, gnl|Hg17|chr18 (18034616-18035924)
               

               
               123-1512, gnl|Mm7|chr18 (11290864-11292161)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-1512, gnl|bosTau2|chr3 (80042936-80044324)
               

               
               123-1512, gnl|Hg17|chr18 (18034616-18035924)
               

               
               123-1512, gnl|Mm7|chr18 (11290864-11292161)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               sme (0.305437)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               pan (0.23596)
               

               
               eje (0.197668)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               sme (0.305437)
               

               
               pla (0.267344)
               

               
               sug (0.254582)
               

               
               pan (0.23596)
               

               
               eje (0.197668)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

	123-1512, gnl\|bosTau2\|chr3 (80042936-80044324)
	123-1512, gnl\|Hg17\|chr18 (18034616-18035924)
	123-1512, gnl\|Mm7\|chr18 (11290864-11292161)

	amn (0.417711)
	sme (0.305437)
	pla (0.267344)
	sug (0.254582)
	pan (0.23596)
	eje (0.197668)
	gul (0.177588)
	eye (0.170503)
	eli (0.151814)
	lin (0.145603)
	spl (0.143184)
	cst (0.140036)
	hlv (0.139256)
	che (0.136314)
	ova (0.129132)
	tra (0.123092)